Sequence of DPV Cacao swollen shoot virus
Cacao swollen shoot virus polyprotein gene, complete circular genome.
ACC No: L14546
Dated: 2000-03-04 | Length: 7161 | CRC: -1399245553
!!NA_SEQUENCE 1.0
ID CSHCG standard; circular DNA; VRL; 7161 BP.
XX
AC L14546;
XX
SV L14546.1
XX
DT 04-JAN-1994 (Rel. 38, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 2)
XX
DE Cacao swollen shoot virus polyprotein gene, complete circular genome.
XX
KW aspartyl protease; capsid protein; movement protein; reverse transcriptase;
KW ribonuclease H.
XX
OS Cacao swollen shoot virus
OC Viruses; Retroid viruses; Badnavirus.
XX
RN [1]
RP 1-7161
RX MEDLINE; 93383387.
RA Hagen L.S., Jacquemond M., Lepingle A., Lot H., Tepfer M.;
RT "Nucleotide sequence and genomic organization of cacao swollen shoot
RT virus";
RL Virology 196(2):619-628(1993).
XX
DR SPTREMBL; Q66231; Q66231.
DR SPTREMBL; Q66232; Q66232.
DR SPTREMBL; Q66233; Q66233.
DR SPTREMBL; Q66234; Q66234.
DR SPTREMBL; Q66235; Q66235.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7161
FT /db_xref="taxon:31559"
FT /organism="Cacao swollen shoot virus"
FT CDS 441. .872
FT /codon_start=1
FT /db_xref="SPTREMBL:Q66231"
FT /note="ORF1"
FT /protein_id="AAA03169.1"
FT /translation="MSSRWENSIQEWYEKSHTANLEYLDLASTSKVTNNQLAHNLAVTF
FT DRVNLGNRVFIKNLKQIQESILELNTRVDTIEVALRRLTKTFRESKPLTESEVRKLVEE
FT IAQQPKIVEKQALEISQQLEQKLEKVEKLLHKLDQWVGQ"
FT CDS 869. .1267
FT /codon_start=1
FT /db_xref="SPTREMBL:Q66232"
FT /note="ORF2"
FT /protein_id="AAA03170.1"
FT /translation="MTDSPAYQEALKEAEKVDPPAVGITTSTGVTAVQGFKTVIKQNNV
FT QICLLAVIADKLEELIQDQKKARKDKAKEVAIPEDLITKLQGLSIQEKGEAKVTRKPEP
FT KGTLFGFKDPYKILAAEKAKITLKPVKE"
FT CDS 1272. .6776
FT /codon_start=1
FT /db_xref="SPTREMBL:Q66233"
FT /note="ORF3"
FT /product="polyprotein"
FT /protein_id="AAA03171.1"
FT /translation="MSRARPQHPVPSVTTTTSEQNREGPLYEDQIRDYRRGQRRIFNLR
FT RRARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT
FT HRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALV
FT VFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQN
FT GEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWIL
FT RPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATSASRPHYNEEDEEVESETESEIR
FT EHTIAVWIGEEEIPDQTGRKKVWEESSNGNGRFFRYYTPPPTFEGQIIATGWGSDDDNE
FT KTPPKWDESPDEEGPTEPIWDQEEEEDEYDPNVYRAYLQKEEDEWQEITASLREEMEYP
FT KRRPQTEMAFSETVDYTPPGDTMMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFL
FT KRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTEKME
FT FMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRIFSLEDPASGST
FT RIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHR
FT MKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTS
FT KYGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRVA
FT IFEGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEVVHEKVFMMREEDQSYWLG
FT KTNHWTAMVRVSSQQYHCMHQWEHNKEILVVAHINCHFCKQPTQLRSRIHCPTCQLTSC
FT FMCAPIYCNMIVQQQPKPPVPFNTHTLLQQQAAYIQWLEKENQRLTEAVEFYKKEAEEL
FT RLERDLEQDRRSLEPTLLDKGKKVQILDPDEDQHTAYLEEDTISRVIGHTVEQQEVRKP
FT VKKGNMLYNLDVVLHIPEVGRPIKVKAILDTGATTCCININSVPQTAIEQNTFLVQFRG
FT INSTQSVDKKLKYGRMTISNHQFRIPYCYAFPLSLGDGIEMILGCNFIRGMYGGLRIEG
FT HTITFYKNVTTIQTRLAAVMVGGTTASELGGGEESKSDSESMFDLSETEEFDSETHQQI
FT VSHVAAQAQQQKLDPKLQQLMVQLQDQGFIGENPMQHWAKNKILCRLDIKNPDLIIEDK
FT PIKHLTPAMEKQFQKHIKALLDIGVIRPSKSKHRTTAFIVESGTVIDPVTKKTIHGKER
FT LVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKVFSKFDLKSGFHQVAMAEESIPWTAF
FT WVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDDILVFSENMAEHTKHI
FT GIMLKICQENGLVLSPSKICLAQREIEFLGTVISQGQMKLQAHVIKKIVNKANIELETT
FT KGLRSFLGLLNYARIYIPNLGRKLSPLYAKTSPTGEKRFNRQDWHLIKEIKDMVQKLPN
FT LAIPPARCYIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGVVKSTIDAEI
FT YALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTSTHKPSRIRWITFSDYITGLGVP
FT VTIEHIDGKENQLADTLSRLVYTTWNQSQTHQPEEEELEKSQHLSFAGLAIPIAWPMMG
FT SYNKRRTPLLTGQSLWQRNKPSQHSSTASKSRQPRKHYWPYVTYRAYSTSRETIWPLLP
FT LETTGLATDCQLPNKTQPP"
FT CDS 2374. .2715
FT /codon_start=1
FT /db_xref="SPTREMBL:Q66234"
FT /note="ORFx"
FT /protein_id="AAA03172.1"
FT /translation="MEMEDSSGITLLHQHLKGKSLLQDGEVMMIMKKLLQNGMKAQMKK
FT DPQNPYGIKKKKKMNMIPMSIGHTYKRRKMSGKKSQLVSGKKWSTQKDDHKQRWRSLKQ
FT STILHLVTL"
FT CDS 6434. .6829
FT /codon_start=1
FT /db_xref="SPTREMBL:Q66235"
FT /note="ORFy"
FT /protein_id="AAA03173.1"
FT /translation="MEPVPNSPTGGRRAGEVPTSQLRGASYPYSLAYDGLLQQKKDAIT
FT HGTITLATEQAISAQLYRIEEQAAKKALLALRDLQGVLHFKRDYLAATATRDNWASDRL
FT PAAQQDSAALDQHAGVINAIIERAVQP"
XX
SQ Sequence 7161 BP; 2410 A; 1527 C; 1630 G; 1594 T; 0 other;
L14546 Length: 7161 December 21, 2001 15:46 Type: N Check: 3496 ..
1 tggtatcaga gcaaggttaa acatggtcat gtccggctaa aaacctagtg
51 ttaggttcgg ggaaagaggt ctactgtgtg tttcaaatat ccatttgtta
101 ttatccaaac agtgtctgtt ccttgtgttt aggatggaaa cctgaggttg
151 cgaactacgt gttcaaagga gtgatcattt caaaaggaat gtcattctaa
201 ctatcgtatg ctctagactt gccctgttat agcaacagag gatcctgtct
251 atcagaaaat agtttgaaca attccgatga tctctcatac tttaggtata
301 acaacgccac gtataaggag ctaattcttt tgtaaaagac gtaacccaga
351 agagagtacc cagagagggg aagacttggg gagaaggtga acagaagaga
401 gagcttactg tacctggtac tgttatagga agattttgtt atgtccagtc
451 gctgggagaa tagtatacaa gagtggtatg agaagtcaca cacagcaaac
501 cttgagtacc ttgacctagc atctactagt aaagtgacca acaaccagtt
551 agcacataac cttgcagtaa cctttgatag agtaaattta ggtaaccgag
601 tttttattaa aaacctgaag cagattcaag agtctattct tgaattaaac
651 acccgtgttg atactataga agtagctcta aggaggttaa ccaagacctt
701 cagagaaagc aaaccactta ccgaaagtga agtccgtaag ttggttgaag
751 aaattgctca acaacctaag atcgtcgaga aacaagcact cgagatctct
801 caacaacttg agcagaaact agagaaggtg gaaaagctct tgcacaaact
851 tgaccagtgg gttggtcaat gactgatagc ccagcctatc aagaagcttt
901 aaaggaagca gaaaaggttg acccaccagc agttgggata acaacctcca
951 ccggagtaac agcggttcaa gggtttaaaa ccgttattaa gcagaacaac
1001 gttcagatct gcttactcgc tgtcatagca gataaactag aagagctgat
1051 acaggatcag aagaaggcca ggaaggataa ggcaaaggaa gttgccattc
1101 cagaagactt aatcacaaaa ctccaaggat tatctattca ggagaaagga
1151 gaggcaaaag tcacaagaaa acccgagcca aaaggaacgc tgtttggatt
1201 caaagatcct tacaagatcc tagcagcaga aaaggctaag atcacactta
1251 agcctgtgaa agagtagaaa gatgagtcga gcacgaccgc aacacccagt
1301 tcctagtgtg actacaacca ctagtgagca aaacagggaa ggacctctat
1351 acgaggatca gatcagagac taccgaagag gacaaagaag gatctttaac
1401 cttcgaagaa gagccagaag gttaagaaga tcaatgatgg ggtctagata
1451 tcaagagacc ctagaacaag aaatagatcc acagacaaca ctgaggttgt
1501 ccatgcaaga acgagcaaga ctagtaccag ctgaggtact gtacagatcc
1551 aggcgagaca ctgttcatca cagagtctac acacaccgat ctgaagagtc
1601 agtcctatgt gttggcggaa gccaagtgga tagggcgttt atacagcctg
1651 aaagtctgga acaactccaa aggacaggaa tgtcctttat tcatatcgga
1701 attctgcaag tgaggattca gattctgcac cgacaagaag aaggcaccat
1751 ggccttggta gtattcaggg ataacagatg gtcgggagat cagtctattt
1801 tcgctcaaat ggaaatagac ctaacaaaag gaagccaatt ggtgttcgtt
1851 ataccagaca ccatgatgac catcggagac tttgcccgga acgtacaact
1901 atccatcctc acaagagggt atgaaaattg gcagaacgga gaagccaatc
1951 tcctgataac acgtggcatg acagggcgac tgtccaacac tcccaatgtc
2001 gcctttgctt accaaattgc cagcgcaaca gattacttgg caagtcacgg
2051 tgtaaaagct atcgcaggaa agaaaatgaa tctgcaacac ctgcgaaacc
2101 aacagtggat actacgtcca ccacaaacgg acatcactcc aatgcaacca
2151 agatcggttg aaacaagaaa tctcgtagat ggaagtatct ccatcagatt
2201 ccatgattat gaggcagcta cttcagcttc aagacctcac tacaatgagg
2251 aagatgaaga agtggaatca gaaacggagt cagaaataag ggagcatact
2301 attgcagtct ggataggaga agaagaaatt ccagaccaga cagggagaaa
2351 gaaggtatgg gaagaatcta gtaatggaaa tggaagattc ttccggtatt
2401 acactcctcc accaacattt gaagggcaaa tcattgctac aggatgggga
2451 agtgatgatg ataatgaaaa aactcctcca aaatgggatg aaagcccaga
2501 tgaagaagga cccacagaac ccatatggga tcaagaagaa gaagaagatg
2551 aatatgatcc caatgtctat agggcatact tacaaaagga ggaagatgag
2601 tggcaagaaa tcacagctag tctcagggaa gaaatggagt acccaaaaag
2651 acgaccacaa acagagatgg cgttctctga aacagtcgac tatactccac
2701 ctggtgacac tatgatgaca cctgtcggat accccccggc ctcgtcatca
2751 agatcaacag tcacaacgcc aagtagaccg ccactttttg aaggaaggac
2801 cacacacgtg ccacgattcc taaaaaggga tgagtacaca gaatggtggc
2851 aattaccatc atcgcaaggc acaacagggg cgttatttgt aatgcctaaa
2901 caaatgggcc tattccatga agtcttctcg agatgggaat ccatcaccaa
2951 aaactacgtt gcggcccaag gttttacgga cccaacagaa aagatggagt
3001 tcatggaaaa tctgttagga gaaacagaaa agctaacctg gatccaatgg
3051 agaatgaatt acgaggctga ataccagcag ctgctaaccc aagcagatgg
3101 gcgacaagga acccaaaata tcttgtccca gatcaagaga atcttttctt
3151 tagaagaccc agcctctgga tccacgagaa tacaagatgc tgcatacaga
3201 gacctggaga gattaacctg ccacaacata aaagacatag ttcaatttct
3251 aaatgactat ggaaggcttg cagcaaagag tgggcgactg ttcttaggaa
3301 ctgagctcag tgaaaagtta tggatgaaga tgccaccaga actagggcat
3351 cgaatgaaag aagcatttca aaaggagtat tcaggcaatg aagtaggagt
3401 cttcccgcgc atcttgtttg cctacagata tctggagcaa gagtgtaaag
3451 atgcagcttt taagagaagc ctgaagtcat taagcttctg caaagacatg
3501 ccattaacag gatactatga taaaacctcc aagtatggca tgagaaagtc
3551 aagaacctat aaaggaaaac cacatgcatc acatgcaagg gtggagaaga
3601 ggaagcactt gatcagaaat aaaaagtgca aatgttatct ctgcggggat
3651 gaaggacact ttgcccggga atgccccaat cagaggagag atgtcaagag
3701 agtagccatt tttgaaggaa ttgatcttcc tgaaggcttt gatatcgtct
3751 cagtagaaga aggagaagaa gagtcagatg ctatttatag catatctgaa
3801 aatgaagacg gagaacttga cactgaagta gtccatgaga aagtcttcat
3851 gatgagagaa gaagaccagt cctattggtt aggaaagaca aaccattgga
3901 cggctatggt gcgagtcagc agtcagcaat atcactgcat gcaccaatgg
3951 gagcacaata aagaaatatt agtggtggcc cacatcaact gccacttctg
4001 taagcaaccc actcagttaa ggagtcgaat acactgtccc acgtgtcaac
4051 tcaccagttg cttcatgtgt gccccaatat actgcaatat gatagtccag
4101 cagcagccta aaccaccagt accgtttaat actcacacac tgctccaaca
4151 acaagcggct tatatccagt ggttggaaaa agaaaatcag cggttaactg
4201 aagccgttga attctataaa aaggaggctg aagaattaag gctcgaaaga
4251 gacttagagc aagatagaag gagtctggaa cctacgttgt tagacaaagg
4301 aaagaaggtt cagattcttg atccagatga agatcagcac acagcgtatc
4351 ttgaagaaga taccatcagc cgtgttatcg gccatactgt ggaacaacaa
4401 gaggttagaa agcccgttaa aaagggaaac atgctctata acctcgatgt
4451 ggtgttacat atcccagagg taggaagacc tatcaaagtc aaagcaattc
4501 tagacactgg agcaaccaca tgctgtataa acatcaactc tgtaccacaa
4551 acagcaattg aacagaacac ttttctggta caattccgag gcataaattc
4601 cacgcaatct gtggataaga aactcaaata tgggaggatg actatcagca
4651 atcaccagtt cagaatcccg tactgttatg cctttcctct atcccttggt
4701 gatggaatag agatgatcct agggtgtaat ttcatccgtg ggatgtatgg
4751 cggtttgcgt attgaaggtc acacaatcac cttctacaaa aatgtcacta
4801 caatccaaac ccgccttgct gccgtaatgg ttggtggtac aaccgcttct
4851 gagttagggg gaggggagga gtccaaatcc gattctgaat ccatgtttga
4901 cctctcagaa acagaagaat ttgactcaga aacccaccag cagattgtga
4951 gtcatgttgc agcccaagcc caacaacaaa aattggatcc aaaactccaa
5001 caactaatgg tccaacttca ggatcagggc tttattgggg aaaatcctat
5051 gcaacattgg gctaaaaaca agatcctatg tcgactagat atcaagaatc
5101 ctgatcttat aatagaagac aagcccatca agcatctaac accggccatg
5151 gagaaacagt tccagaagca catcaaagca ctcctggaca ttggtgttat
5201 caggcctagt aagtcaaaac acaggactac ggccttcatt gtggaatcag
5251 gcactgttat tgatccagtc acgaaaaaga ctatacacgg taaagaacgt
5301 ttggtcttca actacaaacg cctgaacgac aacactgaaa aggaccagta
5351 ctcgctaccc ggtatacaga ccatcctaaa gcgggtgggc aacaagaagg
5401 tcttcagcaa gttcgatcta aaatcgggct tccatcaagt tgccatggcg
5451 gaagagtcca tcccttggac tgctttctgg gtaccgcagg gcctttatga
5501 atggttagtg atgccctttg ggctcaaaaa cgctcctgca gtatttcaaa
5551 gaaaaatgga ccaatgcttc aaaggtacag aagaattcat tgcagtgtac
5601 attgatgaca ttttggtctt cagcgaaaat atggcagagc ataccaagca
5651 cattggaatc atgctcaaga tctgccaaga aaatgggctg gtactaagcc
5701 caagtaagat atgtcttgcc caacgcgaga ttgaattttt gggcacagtc
5751 atctcacaag gacaaatgaa gcttcaggcc catgtaatca aaaagatagt
5801 caacaaagcc aacatagagc tagaaacaac aaaaggcctg agatcctttt
5851 tgggcctcct caactatgcc cgtatctaca tacccaacct gggtagaaag
5901 ctaagtccac tatatgccaa gactagtccc accggagaga aaaggtttaa
5951 tcgacaagat tggcatctga taaaggaaat caaagatatg gtccaaaagc
6001 tcccaaacct cgctatccca ccagcaagat gctacattat cattgaaagc
6051 gatggctgca tggaaggatg gggggccgta tgtaagtgga aattagcaaa
6101 agaagattcc cgcactactg aaaagatttg tgcgtacgct agtgggaaat
6151 tcggtgttgt caagtctacc atcgacgccg aaatttacgc actcataaaa
6201 gcattggaat cttttaaaat cttctatctg gacaaaaaac atttggtggt
6251 gcgaacagac tgtcaagcga tagtgacatt ttacaacaag acaagtactc
6301 ataaacccag tagaatacgt tggatcacct tttccgacta tataacgggg
6351 ttaggagttc cggttactat cgaacacata gacggaaaag agaaccagtt
6401 ggctgataca ctaagcagac tcgtgtatac aacatggaac cagtcccaaa
6451 ctcaccaacc ggaggaagaa gagctggaga agtcccaaca tctcagcttc
6501 gcggggctag ctatccctat agcttggcct atgatgggct cctacaacaa
6551 aagaaggacg ccattactca cgggacaatc actctggcaa cggaacaagc
6601 catctcagca cagctctacc gcatcgaaga gcaggcagcc aagaaagcac
6651 tattggccct acgtgaccta cagggcgtac tccacttcaa gagagactat
6701 ttggccgcta ctgccactag agacaactgg gctagcgaca gactgccagc
6751 tgcccaacaa gactcagccg ccctagacca acatgctggc gtgattaacg
6801 ccattattga aagggctgtc caaccctagt ttggacggta gtagtaggtg
6851 taataataat agttaggtgt gctttacttt tccaagctgt cactcattat
6901 agagtagaca tgatgatcga cgatggggcc caatgagcac ccggatcacc
6951 attctcccat ctataaatga gagtttgtaa ggcttagcca tcagagagtg
7001 aaaactactc aactgatcct aagtgttaga gtttgtattt tcctaagagt
7051 ttgtaagatt tttatgaaat aaagagtcta ctttgtgttt atctctttgt
7101 ttcacctggg atttaaacag tttttgtttt tccgcaccat cggtttgcgc
7151 ccgatcgatg t