Sequence of DPV Rice hoja blanca virus

Rice hoja blanca virus nonstructural protein (NS4) and (NS4vc) genes, complete cds's.

ACC No: L14952

Dated: 1994-03-08 | Length: 1991 | CRC: -1358805961

                !!NA_SEQUENCE 1.0
ID   HBVNS4VC   standard; RNA; VRL; 1991 BP.
XX
AC   L14952;
XX
SV   L14952.1
XX
DT   14-JUL-1993 (Rel. 36, Created)
DT   08-MAR-1994 (Rel. 38, Last updated, Version 2)
XX
DE   Rice hoja blanca virus nonstructural protein (NS4) and (NS4vc) genes,
DE   complete cds's.
XX
KW   inclusion body protein; nonstructural protein.
XX
OS   rice hoja blanca virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN   [1]
RP   1-1991
RX   MEDLINE; 94065674.
RA   Ramirez B.C., Lozano I., Constantino L.M., Haenni A.L., Calvert L.A.;
RT   "Complete nucleotide sequence and coding strategy of rice hoja blanca virus
RT   RNA4";
RL   J. Gen. Virol. 74:2463-2468(1993).
XX
DR   SPTREMBL; Q08348; Q08348.
DR   SPTREMBL; Q08349; Q08349.
XX
CC   NCBI gi: 290931
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1991
FT                   /db_xref="taxon:12332"
FT                   /sequenced_mol="cDNA to genomic RNA"
FT                   /organism="rice hoja blanca virus"
FT                   /isolate="Columbia"
FT   CDS             55. .579
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q08348"
FT                   /note="putative;  NCBI gi: 290932."
FT                   /standard_name="inclusion body protein"
FT                   /gene="NS4"
FT                   /product="nonstructural protein"
FT                   /protein_id="AAA16483.1"
FT                   /translation="MDFLKTDVSVGPIEGLNYRRLYDILPNKVSDNITLPHLKNPDKVT
FT                   EENKKLILCGFIYVAYHHPIETDPDFTSVHKHMPGISESFLEHLLGTDESNNTIDLGKL
FT                   FDILQERLGDWITMNFLKHNNRMSKDQIKTLCETIVDLAKAEGGDTEIYEAVWKKMPAY
FT                   YSILLQQILHK"
FT   CDS             complement(1104. .1955)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q08349"
FT                   /note="putative;  NCBI gi: 290933."
FT                   /gene="NS4vc"
FT                   /product="nonstructural protein"
FT                   /protein_id="AAA16484.1"
FT                   /translation="MSISRYNPFKKSVILTDDLSERAAEKFEKKNKRKLALKNRPLTKG
FT                   RMTIDAAATVLGLEPFSFADVRANSYDMFVAKQDYSVCANRRTHFTIDSSPLFFRKPLQ
FT                   TFPFFRIATFAVIWLGIKGRANGTVTFRIIDRSYTDPERQVEVEICYPMAKTFAVLGSL
FT                   PNFMSYEDADKMQVEIVIKDDSVQNCIISRSLWFWGIERTDFPVPMESQKTVMFEFEPL
FT                   PDRTVNHLSKFKNFTTDVVQRAVTTAFTTREALEDKPGIEFGVVKQPGVPLVQKKRVMI
FT                   EA"
XX
SQ   Sequence 1991 BP; 658 A; 429 C; 389 G; 515 T; 0 other;

L14952  Length: 1991  December 21, 2001 15:46  Type: N  Check: 4786  ..

       1  acacaaagtc cagggcataa aaccataatc taaatattct gatagtaagc
      51  acagatggac tttctcaaga ctgatgtgtc cgtagggcct attgaaggat
     101  tgaactatag acgtttatat gacatactcc caaacaaagt tagtgacaat
     151  ataactcttc cacacctcaa gaatccagat aaagtcactg aggaaaacaa
     201  gaagctgatc ctgtgtggtt tcatctatgt tgcttaccac cacccaattg
     251  aaactgatcc ggacttcaca tctgttcaca agcacatgcc tggaataagt
     301  gagtcattcc tggaacacct cctaggaacc gatgagtcta acaacactat
     351  tgaccttggc aagctttttg acatattaca agagaggctg ggtgactgga
     401  tcaccatgaa tttcttgaag cacaacaaca ggatgtccaa ggaccagatc
     451  aagactctat gcgagactat cgttgacttg gcaaaagcag aaggaggtga
     501  cacagagatc tatgaagctg tctggaaaaa gatgccagca tattactcaa
     551  tcctgcttca gcaaatacta cataaatgat tattatcgga caaattctat
     601  aatatgtact aaccaaacta acaggatgaa gatggaagaa aagggagaaa
     651  gaaaaaagag aaaagaaaaa ggaaaagaaa aaggaagaga aaaaataaga
     701  aaaaactaag tatcagaaat cctcatacat cagcatcaag agaactgcaa
     751  ctcacttagt tcataaataa tgcaaccctt gatgaagcaa tgcatctgct
     801  acctatatct cgacacagtc caacaactga aatcaagtac aaagacacaa
     851  cagtgtgaaa aaaacatcag aaaaccataa agtaggcatt caaagcagtg
     901  tcctaaaacc aaaacctggt gctattcacc tcatccgagt atgtctccgg
     951  atggggtgct tagcaccctt taaaattaaa gacaaacatc taacaaacat
    1001  gcatagcatg ctgactactc ccgttgctct aatagatggg gacgaagact
    1051  tagtctttca aagtgtacaa atctagacag accaaacctt aggtttttat
    1101  gtctcaggcc tcaatcatta cccttttctt ttgcaccagt gggacgccag
    1151  gctgcttcac tactccaaat tcaataccag gtttgtcttc tagtgcttcc
    1201  ctggtggtga aagcagtagt aactgcacgc tggaccacat ccgtagtgaa
    1251  gttcttgaac ttgctcaagt gattgacagt cctatcaggt aatggttcaa
    1301  attcgaacat cacagttttc tgggattcca taggcacggg aaaatctgtc
    1351  ctctcaattc cccagaacca aagggatcta gagatgatgc agttctgaac
    1401  tgaatcatct ttgatcacaa tttctacctg catcttatct gcatcttcgt
    1451  atgacatgaa gtttggtaga gaaccaagca ctgcaaatgt cttagccatg
    1501  ggatagcaaa tctccacttc aacctgcctc tcaggatcag tgtaagatct
    1551  gtctattatc ctgaaagtga cagtaccgtt ggctctacct ttgattccga
    1601  gccatatgac agcaaaagtt gcaattctga agaacggaaa agtttgtaag
    1651  ggctttcgga agaagagagg ggaagagtca atggtgaagt gagtcctcct
    1701  attagcacaa acagaataat cttgtttggc aacaaacatg tcatagctgt
    1751  ttgctctcac atcagcaaag ctaaacggtt ccaatccgag aacagtagca
    1801  gcagcatcaa tagtcattct tcctttggtg agaggtctgt ttttaagagc
    1851  aagctttcgc ttgttcttct tctcaaactt ctcagctgct ctctccgata
    1901  agtcatcagt caagatgacg cttttcttga acggattgta cctagatatc
    1951  gacatgtttg ttcgcaaaat gtgattgccc tgactttgtg t