Sequence of DPV Soybean dwarf virus
Soybean dwarf virus strain Y readthrough protein, coat protein, and movement protein genes, complete cds.
ACC No: L20835
Dated: 2011-07-08 | Length: 2172 | CRC: 534278694
ID L20835; SV 2; linear; genomic RNA; STD; VRL; 2172 BP.
XX
AC L20835;
XX
DT 17-JUL-1993 (Rel. 36, Created)
DT 08-JUL-2011 (Rel. 109, Last updated, Version 6)
XX
DE Soybean dwarf virus strain Y readthrough protein, coat protein, and
DE movement protein genes, complete cds.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-2172
RX DOI; 10.1007/BF01309758.
RX PUBMED; 8240014.
RA Smith O.P., Damsteegt V.D., Harris K.F., Vonder Haar R.;
RT "Nucleotide sequence and E. coli expression of the coat protein gene of the
RT yellowing strain of soybean dwarf luteovirus";
RL Arch. Virol. 133(1-2):223-231(1993).
XX
RN [2]
RP 1-2172
RA Smith O.P.;
RT ;
RL Submitted (15-JUL-1993) to the INSDC.
RL USDA-ARS, Fort Detrick, Bldg. 1301, Frederick, MD 21702, USA
XX
RN [3]
RC Sequence update by submitter
RP 1-2172
RA Smith O.P.;
RT ;
RL Submitted (06-JUL-2011) to the INSDC.
RL Biology, Hood College, 401 Rosemont Ave, Frederick, MD 21701-8575, USA
XX
CC On Jul 7, 2011 this sequence version replaced gi:310362.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2172
FT /organism="Soybean dwarf virus"
FT /strain="Y"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT CDS 4. .2172
FT /codon_start=1
FT /transl_except=(pos:604. .606,aa:OTHER)
FT /product="readthrough protein"
FT /note="ORF5"
FT /protein_id="AEJ84486.1"
FT /translation="MVAVSNVAIQRRRNRRAARRAPRVQLMAIPTATSRPQRRGRQRRR
FT RRNNRGGSYISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHEYK
FT ITSVLLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE
FT WHDTSEDQFKIHYKGNGESKIAGSFKITINVLTQNAKXVDGEPGPKPGPDPAPQPTPTP
FT EPTPAKHERFIAYTGTLSTLISARQSSDSISLYSIRNQRIRYIEDENSSWANIDAKWYS
FT QNSVEAIPMFVYPVPEGTWSIEISCEGYQAASTTSDPHRGKCDGMIAYDDDSSKVWNVG
FT QQNNVTITNNKADNDWKYGHPDLTINGDRFDQNQVVEKDGIISFHLVTTGPNASFFLVA
FT PAVKKTAKYNFCVSYGDWTDRDMEFGMVSVVLDEHLEGARSSQYIRKSPRPGHFGVNRS
FT HRLQDSFTPVEYVSEDDSSSSSSIVSNRPSTPVSDSEVQFAESLKGKLPTQSKLPPKGF
FT LSRLSVKEKEEISKSRPSNVENQVEPLVKAYGYPSQTGVYDAAREILQAKEAAENLAEL
FT ERDLKEINRLEPPDIIVQEEIPDFVPPSEKVVQEDNREYIPPIWRNADQAVAVSSYEPP
FT DWSQSAYESGYPSRKVGSLRGTLSKLGGSLKSGESSLRGSLRKTQDQSDLDYKLSKLNV
FT LQRSQYQRILANLGKTRARAYIDGLDLS"
FT CDS 4. .606
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3"
FT /db_xref="GOA:Q08391"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q08391"
FT /protein_id="AAA61934.1"
FT /translation="MVAVSNVAIQRRRNRRAARRAPRVQLMAIPTATSRPQRRGRQRRR
FT RRNNRGGSYISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHEYK
FT ITSVLLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE
FT WHDTSEDQFKIHYKGNGESKIAGSFKITINVLTQNAK"
FT CDS 20. .589
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4; 21 kDa ORF"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q08404"
FT /protein_id="AAA61935.1"
FT /translation="MSQYNDDAIVGQQDALHEFSSWLFQRPPADHNAEDDNDDEGEIIE
FT EEAIFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQVPSLMNLTHTASTPKFNRYSINSVSQRAVRNVSQPELSMASNGMIPV
FT KINSRSTIKGTESPRLQAPSRSRSMS"
XX
SQ Sequence 2172 BP; 673 A; 487 C; 497 G; 515 T; 0 other;
l20835 Length: 2172 08-JUL-2011 Type: N Check: 7446 ..
1 agtatggtcg cggttagcaa tgtcgcaata caacgacgac gcaatcgtag
51 ggcagcaaga cgcgctccac gagttcagct catggctatt ccaacggcca
101 ccagccgacc acaacgcaga ggacgacaac gacgacgaag gagaaataat
151 agaggaggaa gctatatttc cggaggatca ggcaaggctc acacattcgt
201 gttttcaaag gacggcatca atggtagttc caagggaagt atcactttcg
251 ggccgtcttt atcagaatgc aagccattct ctgatggaat actcaaggcc
301 taccatgaat ataagatcac gagtgtctta ttacagttca tcaccgaggc
351 ctcttccacc tcgtcaggtt ccatcgctta tgaacttgac ccacactgca
401 agtactccga aattcaatcg ctactcaata aattcagtat cacaaagagc
451 ggttcgaaac gtttcccaac cagagctatc aatggcctcg aatggcatga
501 taccagtgaa gatcaattca agatccacta taaagggaac ggagagtcca
551 agattgcagg ctccttcaag atcacgatca atgtcctaac gcagaatgct
601 aaataggtag acggagaacc gggtccgaaa ccaggtccag acccagcacc
651 ccaaccaaca ccaacacctg aaccaacgcc agccaaacac gagagattta
701 tcgcgtacac cggtacgttg tctacactca ttagtgctag acagtcttcc
751 gacagtattt ccttatattc catccggaat cagaggatca gatacatcga
801 agatgaaaat tccagttggg caaacataga tgcaaaatgg tactcacaaa
851 attctgttga ggccattcca atgtttgtat atccagtgcc tgaaggtact
901 tggtcaattg agatctcttg tgagggctac caggcagcgt ctacgacttc
951 agacccgcat cgtggaaaat gcgatggcat gattgcttac gacgacgatt
1001 catctaaggt gtggaatgtt ggccaacaga acaatgtaac cataaccaat
1051 aacaaggccg ataatgattg gaagtatggt catccagatc taacgatcaa
1101 tggtgacaga ttcgatcaaa atcaagtagt cgagaaagat ggaattatct
1151 cattccattt agtaactacc ggccccaatg caagtttctt tcttgtcgct
1201 ccagctgtga agaaaacagc taagtacaac ttttgtgttt cttacggaga
1251 ttggacagat agagatatgg aatttggtat ggtatcagta gtgcttgatg
1301 agcacttaga aggtgcaagg agttctcagt acattaggaa atcgccaaga
1351 ccaggtcatt ttggcgtcaa tcgttctcac cgattgcaag atagtttcac
1401 acctgtggaa tatgtcagtg aagatgatag tagtagtagt agtagtatag
1451 ttagtaatcg accatcaact ccggttagtg atagtgaagt ccaattcgca
1501 gaatcgctta agggaaagct cccaacacaa tcgaagcttc cacccaaagg
1551 gttcctatca cggttaagtg tcaaagaaaa agaagagatt tctaagtcaa
1601 ggccctcaaa tgttgaaaac caggttgaac ctctcgttaa agcttatgga
1651 tacccgtctc agacaggtgt ttatgatgcc gccagagaga tcttgcaagc
1701 taaagaagct gcagaaaact tggccgaatt agaaagggac ttaaaggaaa
1751 tcaacagact agaaccaccg gacataatag ttcaggaaga aatccctgac
1801 tttgtgccgc cctcggagaa ggttgttcag gaagataatc gtgaatacat
1851 acctccgatt tggcgtaatg ccgaccaggc tgtggcggtc tcatcatatg
1901 agcctccaga ctggagtcag tcagcttatg agtcaggtta tccttctagg
1951 aaagtaggct cactcagagg tactctctca aaattaggag ggtcgcttaa
2001 aagtggcgag tcttctctta gaggtagcct ccgcaagacg caagatcaaa
2051 gtgatctaga ctacaagttg tctaaactca atgtgttgca acgatcccaa
2101 tatcaacgga tcttggcaaa ccttgggaaa acgcgtgcgc gagcatacat
2151 cgatggttta gatttaagtt ag