Sequence of DPV Soybean dwarf virus
Soybean dwarf virus RNA-dependent RNA polymerase, coat protein, genome-linked protein genes, complete cds.
ACC No: L24049
Dated: 2000-06-09 | Length: 5861 | CRC: 1381993443
!!NA_SEQUENCE 1.0
ID SDVRNAP standard; RNA; VRL; 5861 BP.
XX
AC L24049;
XX
SV L24049.1
XX
DT 21-DEC-1993 (Rel. 38, Created)
DT 09-JUN-2000 (Rel. 64, Last updated, Version 3)
XX
DE Soybean dwarf virus RNA-dependent RNA polymerase, coat protein,
DE genome-linked protein genes, complete cds.
XX
KW coat protein; genome-linked protein; RNA-dependent RNA polymerase.
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5861
RX MEDLINE; 94120742.
RA Rathjen J.P., Karageorgos L.E., Habili N., Waterhouse P.M., Symons R.H.;
RT "Soybean dwarf luteovirus contains the third variant genome type in the
RT luteovirus group";
RL Virology 198(2):671-679(1994).
XX
DR SPTREMBL; Q87031; Q87031.
DR SPTREMBL; Q87032; Q87032.
DR SPTREMBL; Q87033; Q87033.
DR SPTREMBL; Q87034; Q87034.
DR SPTREMBL; Q87035; Q87035.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5861
FT /db_xref="taxon:12049"
FT /organism="Soybean dwarf virus"
FT /strain="Tas-1"
FT 5'UTR 1. .143
FT CDS 144. .1226
FT /codon_start=1
FT /db_xref="SPTREMBL:Q87032"
FT /note="subunit; putative"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAA17536.1"
FT /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVFA
FT AHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLKDGAPLRTWPQPCA
FT PLGSFRSSDDFQEAAREVKTVLDGPEPSLIKGSGDYSLDNPNRIEKFINLIQKKEVLSA
FT TERMIKHAYEEHIGEAPFGKWFNTLPSRMDYIKRAASKRAKAAKRSNSIRQMVEEVNVI
FT PDFISICDVVQVDTGEKLPPKKDKDGEPMEPEPKLKMVRRVRFEHYGDARKYIRQHIRN
FT NNMRLTDGSDVSHATINRYALKFCEDLELDMTSTCYAGDYAMTMVPIPLKNDIERAKIV
FT HSPAARQIRQELGVLNAEVF"
FT CDS <1217. .2824
FT /codon_start=1
FT /db_xref="SPTREMBL:Q87031"
FT /note="5' end not determined; subunit; putative"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAA17535.1"
FT /translation="GFLEGLCSDSGFESPFSILGLPEIVVRSGAAPRKSRSVISFLSQF
FT TLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNKPGIFSNLDYFRDSIVNKVG
FT CPRTHTPEELAATYHSGKRSLYNAAVQSLKKKAVERSDANVTAFLKMEKHLMSKKIAPR
FT LICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFRVGKIIANKWSKFKR
FT PVAIGVDASRFDQHVGVEALQWEHSIYNGAFKDPILKELLHWQTENRIMLFVEDKILKF
FT KVKGHRMSGDINTSSGNKLIMCGMMHYYFKTLGVKAELCNNGDDCVIICERKDENKFQH
FT MHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKPESISKDAHSLISMAS
FT AEDVKTFMSATAQCGMILNSGVPVLDAFHKCLFKASGYKKVSQEAIERIVSFGTQDKLG
FT LRKERVEEPITMDNRLSYWESSGVDPQTQVLVERYFDNLTVHIEPRGVKRLTPLLDKTL
FT LSIASVARKSVSLPILSK"
FT CDS 3032. .3634
FT /codon_start=1
FT /db_xref="SPTREMBL:Q87033"
FT /evidence=EXPERIMENTAL
FT /product="coat protein"
FT /protein_id="AAA17537.1"
FT /translation="MVAVSNVAIQRRRSRRAARRAPRVQLMAVPTATSRPQRRGRQRRR
FT RRNNRGGSFVSGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHEYK
FT ITSVLLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE
FT WHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
FT CDS 3048. .3617
FT /codon_start=1
FT /db_xref="SPTREMBL:Q87034"
FT /product="genome-linked protein"
FT /protein_id="AAA17538.1"
FT /translation="MSQYNDDALVGQQDALQEFSSWLFQRPPADHNAEDDNDDEGEIIE
FT EEALFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQVPSLMNLTHTASTPKFNRYSINSVSQRAVRNVSQPELSMASNGMIPV
FT RINSRSTIKGTESPRSQAPSRSRSMS"
FT CDS <3635. .5209
FT /codon_start=1
FT /db_xref="SPTREMBL:Q87035"
FT /note="5' end not determined; subunit; putative"
FT /product="coat protein"
FT /protein_id="AAA17539.1"
FT /translation="VDGEPGPKPGPDPAPQPTPTPKPTPAKHERFIAYTGTLSTLISAR
FT QSSDSISLYSIRNQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS
FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDPL
FT DLMINGDRFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDR
FT DMEFGMVSVVLDEHLEGARSSQYVRKSPRPGHFGVNRSHRLQDSFTPVEYVSDDDSSSS
FT SSIVSNRPSTPDNDSDIQFANSLKGKLPSQTKLPPKGFQSRLSAREKEEISKSKPSNVE
FT RQVGPLVDAYGYPSQTGVYDAAREILQSKEAAENLAELEKDLKEINKLEPPDTIEQEEI
FT PDFVAPSERVIAEDDRDYVPSIWRNADQAVVISSFEPTDWSRPAYESGDPPKKAGLLKG
FT TLSKLGGSLRSGESSLRGNLRKTQDQSDLEYKLSRLNVPQRSQYQRILANLGKVRARAY
FT IDGLDLV"
FT 3'UTR 5210. .5861
XX
SQ Sequence 5861 BP; 1730 A; 1234 C; 1367 G; 1530 T; 0 other;
L24049 Length: 5861 December 21, 2001 15:46 Type: N Check: 3824 ..
1 agtaaagttg acacctttac agaagtggtc ttacttgtaa gagttaactc
51 atcaagagtt aatataagat ccacctcccg gcaccttcgt atcgtgtttg
101 aggtatctct agtgtttggt tgtttaaata ctagctaata ttcatgttta
151 atttcgatag tttagtgtcg gccaccgcca aggtggtcaa agattttatt
201 catttttgtt ataatagggc gaggcacgta tattatgccc tcaaacgctg
251 gctttgggaa ctccaaggcg tgtttgctgc acatgatgcc tttgtggaca
301 tgtgctacga cgccatgtat ggcgtcgagg agtttgagtg ggagttgcaa
351 aagcaattct ccagtgccga acatgatgtg ctcatcgcca agcacgaatt
401 tgagcgccta ttgaaagatg gcgccccatt gaggacatgg ccacaaccat
451 gtgctccttt gggtagtttc cggtcgtctg acgacttcca agaagctgcc
501 agggaagtga aaactgtcct tgatggacct gaaccctcct tgattaaagg
551 gtcaggagat tactcacttg acaatcctaa ccggattgaa aagtttatca
601 acctcattca gaagaaggag gtactttccg ccaccgagcg aatgatcaaa
651 catgcttatg aagagcatat cggtgaggca ccattcggaa agtggttcaa
701 cactttgccc tctcgtatgg actacatcaa gagggccgct tcaaagagag
751 ccaaggcggc taaaagatcc aactctatcc gccaaatggt agaagaggta
801 aatgtcattc ctgactttat ctcaatatgt gatgttgtcc aggtggacac
851 aggtgagaaa ctccccccaa agaaagacaa agatggggag ccaatggaac
901 ctgaacccaa actaaaaatg gtgagaaggg ttaggttcga gcattatggt
951 gatgctcgta agtacataag acagcatatt cgcaacaaca acatgcgtct
1001 tactgacggc tctgatgtta gtcatgctac catcaaccgc tatgctctta
1051 agttttgcga agacttggag cttgatatga ccagtacttg ctatgctggt
1101 gattatgcta tgacaatggt gcccattccc ctcaagaatg acattgaaag
1151 ggcgaagatt gtccattctc ctgcagccag gcaaatcagg caggagttgg
1201 gcgttctcaa cgctgaggtt ttttagaggg gctctgctcc gactctggtt
1251 ttgaatcccc gttttctatt ttggggttac cagagatcgt ggttcgcagt
1301 ggagctgcac ctaggaagag tcgtagtgta attagttttt tatcgcagtt
1351 taccttaggt ctagattatc aatgcccaaa tcccagttta cacaatgcat
1401 tggtggcggt tgaacgacgt gtgttcaccg ttgggaaagg aaatgaggta
1451 gtgctacctt acaagaacaa accaggaata ttttccaatc ttgattactt
1501 tagagactca attgtcaaca aagttggctg tccgaggacc cacactcctg
1551 aggaacttgc tgcaacgtac cactctggaa agagaagttt gtataatgct
1601 gcagttcaaa gcctcaaaaa gaaggcagtc gaaaggagtg atgccaatgt
1651 gacagctttt ctcaagatgg aaaaacattt aatgagtaag aagatagcac
1701 ccaggttgat atgtccccgc aacaaacggt ataatgttga attgggacgt
1751 cgattgaagt tcaatgagaa gaaatttatg catgcaatcg actcaacctt
1801 tgattcccca actgttctta gtggatatga cagtttcaga gttgggaaga
1851 taatagccaa taaatggtcc aaattcaaga gaccagttgc aataggtgtt
1901 gatgcgagca gatttgatca acatgtgggg gtagaagcac tccaatggga
1951 gcactcaatt tacaacggtg cattcaaaga tcccattctt aaggagttgc
2001 tacactggca aacagagaat agaattatgc tgtttgttga agataaaatc
2051 ctcaagttca aggtcaaagg acatagaatg tccggcgaca ttaacacctc
2101 ttctggcaac aaattaatca tgtgtggtat gatgcactac tacttcaaaa
2151 ctcttggagt caaagccgag ctctgcaata acggcgatga ttgtgttatc
2201 atatgcgagc ggaaagatga gaacaaattc caacacatgc acagctggtt
2251 taaagactat gggtttgaca tgcagattga gactcctgtc tacaagattg
2301 gacagataga gttttgtcaa agtaaaccag ttaaaattaa tggctattat
2351 aggatggtgc gtaaaccaga gagcatatcc aaagacgccc attccctcat
2401 ttcgatggca tcagctgaag atgtcaaaac tttcatgagt gcaaccgccc
2451 agtgcggtat gatcttgaat agtggtgtac ctgttcttga tgcttttcac
2501 aaatgcctat ttaaagcatc ggggtataag aaagtatcgc aagaagctat
2551 cgaaaggata gtctcttttg gaacacagga caaactcggg ctcagaaaag
2601 agcgagtcga agaaccaata acaatggata acaggttgag ttattgggag
2651 tccagtgggg ttgaccctca gacacaggtc cttgtcgaac gatattttga
2701 caatctgacg gtccatatcg aaccccgcgg tgtaaagaga ttgacgcctt
2751 tactagataa aactttgctt tcaattgcga gtgtagcacg aaaatctgtg
2801 tcgctaccaa tactttcaaa atagaagcac tcatagtaac catagtaata
2851 atattagtag tagtaattag tttattagat tacgctagtt cgtacagata
2901 aattgcaacg gattataaat tcctatcagg ttttgcttct ggatttattt
2951 ccagcatccc tgtatcaata ttggcaattt attttgttta cctaaaaatt
3001 tcaaagaatc tgcgcgagat aatcaacgag tatggtcgcg gttagcaatg
3051 tcgcaataca acgacgacgc tctcgtaggg cagcaagacg cgctccaaga
3101 gttcagctca tggctgttcc aacggccacc agccgaccac aacgcagagg
3151 acgacaacga cgacgaagga gaaataatag aggaggaagc tttgtttccg
3201 gaggatcagg caaggctcac acattcgtgt tttcaaagga cggcatcaat
3251 ggtagttcca agggaagtat cactttcggg ccgtctttat cagaatgcaa
3301 gccattctct gatggaatac tcaaggccta ccatgaatat aagatcacga
3351 gtgtcttatt acagttcatc accgaggcct cttccacctc gtcaggttcc
3401 atcgcttatg aacttgaccc acactgcaag tactccgaaa ttcaatcgct
3451 actcaataaa ttcagtatca caaagagcgg ttcgaaacgt ttcccaacca
3501 gagctatcaa tggcctcgaa tggcatgata ccagtgagga tcaattcaag
3551 atccactata aagggaacgg agagtccaag atcgcaggct ccttcaagat
3601 ctcgatcaat gtcctaacgc agaatgctaa ataggtagac ggagaaccgg
3651 gtccgaaacc aggtccagac ccagcacccc aaccaacacc aacacctaaa
3701 ccaacgccag ccaaacacga gaggtttatc gcgtacaccg gtacgttgtc
3751 tacactcatt agtgctaggc agtcttctga tagcatctcc ttatattcca
3801 ttcggaatca gaggatcaga tacattgaag atgaaaactc cagttggaca
3851 aacatagatg caaaatggta ctcacagaac tctgttgagg ctattccaat
3901 gtttgtttat ccagtacctg aaggtacttg gtcaattgag atttcttgtg
3951 aaggctacca ggcagcgtct agcacttcag acccgcatcg tggaaaatgc
4001 gatggcatga ttgcttatga cgacgattca tccaaggtgt ggaatgttgg
4051 ccagcagaat aatgtaacca taaccaacaa caaggccgat aatgattgga
4101 agtatggcca cccagatcct ctagatctga tgatcaatgg tgacagattc
4151 gatcaaaatc aagtagtcga gaaagatgga attatctcat tccatttagt
4201 aactactggc cccaatgcga gtttctttct tgtcgctcca gctgttaaga
4251 aaacagccaa atacaacttt tgtgtttctt acggggattg gacagataga
4301 gatatggaat ttggtatggt atcggtggtg cttgatgagc acttagaagg
4351 tgcaaggagt tctcagtatg ttagaaaatc gccaagacca ggtcattttg
4401 gcgtcaatcg ctctcaccga ttgcaagata gtttcactcc tgtggaatat
4451 gtcagtgatg atgatagtag tagtagtagt agtatagtta gcaatcgacc
4501 atcaactccg gacaatgata gtgatatcca gttcgcgaat tcgttgaaag
4551 gtaagcttcc gtctcagacg aaacttcctc ccaaaggatt ccaatcacgg
4601 ttaagcgcaa gagaaaaaga agagatttca aaatcaaagc cttcaaatgt
4651 tgaacgtcaa gttggtcctc tagttgatgc atatggatac ccttcccaga
4701 cgggtgttta cgatgcagct agggagattc tgcagtctaa agaggctgca
4751 gaaaacttgg cagaattaga gaaggatcta aaagaaatca acaagctgga
4801 accgccggat acaatcgaac aggaagaaat ccctgatttc gtagccccat
4851 cggagagagt gattgcggaa gatgatcgcg attacgttcc ttcaatttgg
4901 cgtaacgccg accaagctgt ggtaatctca tcttttgagc ctacagattg
4951 gagtcggcca gcttatgagt caggtgatcc tcctaagaag gcaggtttgc
5001 tcaaaggcac cctctcaaaa ttgggagggt cgcttagaag tggcgagtcg
5051 tctcttagag gtaacctccg caagacgcaa gatcaaagtg atctagagta
5101 caagttgtct agactcaatg ttccgcagcg atcccaatac caacggatct
5151 tggcgaacct tgggaaagtg cgtgcgcggg catatatcga tggtttagat
5201 ttagtttaat ataaatagaa gtaagtatgc gctttccatc acatttagtt
5251 ggagccaacc ttggtgagtt gctgtcgtgg gatcctggga aacaggttcg
5301 gtgaacaaaa agccggtaat ctcgggcgtt tgtcagacgc cgtcgcatca
5351 acacagtatg catatccatc aataacccaa cgttcttgtg actaaaaatt
5401 aaagttagtt tccgcctctc ttataaacca catataagat gcgagcttgt
5451 ggagagtacc gtcccttgaa taaggatggt tgaaagtttc tggtttcaat
5501 ccattgatca aaattgacac tgcttctggt gactacactg ccgctggcga
5551 tacagcataa acaatttcca ctacttgttc gatgaaatga gaacaattag
5601 taaagtcttg ccggtcacat gattatttgg cggtgctacc gttcgcccct
5651 ttgatggcgt taaatgaaag cggagtaaac cgacatcacc tcaccaggtt
5701 gggttaacct ggggaagccg ggaaaatgcc cggaacactt ggtttagtgg
5751 attttaaact cgagggctct tcctcgctaa aaagggggta gccaggttga
5801 aaactggcat tagggagtga tccctctttg ttgttaaggt ggctttgtgt
5851 ccacctgccc c