Sequence of DPV Rice hoja blanca virus
Rice hoja blanca virus membrane-associated protein (pv2) and membrane glycoprotein (pc2) genes, complete cds.
ACC No: L54073
Dated: 2000-03-04 | Length: 3620 | CRC: -141803794
!!NA_SEQUENCE 1.0
ID RHPV2R standard; RNA; VRL; 3620 BP.
XX
AC L54073;
XX
SV L54073.1
XX
DT 30-DEC-1995 (Rel. 46, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE Rice hoja blanca virus membrane-associated protein (pv2) and membrane
DE glycoprotein (pc2) genes, complete cds.
XX
KW membrane glycoprotein; pc2 gene; pv2 gene.
XX
OS rice hoja blanca virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-3620
RX MEDLINE; 96124515.
RA De Miranda J.R., Hull R., Espinoza A.M.;
RT "Sequence of the PV2 gene of rice hoja blanca tenuivirus RNA-2";
RL Virus Genes 10(3):205-209(1995).
XX
RN [2]
RP 1-3620
RX MEDLINE; 97037713.
RA De Miranda J.R., Munoz M., Wu R., Hull R., Espinoza A.M.;
RT "Sequence of rice hoja blanca tenuivirus RNA-2";
RL Virus Genes 12(3):231-237(1996).
XX
DR SPTREMBL; Q86126; Q86126.
DR SPTREMBL; Q89762; Q89762.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3620
FT /db_xref="taxon:12332"
FT /organism="rice hoja blanca virus"
FT /strain="Costa Rica"
FT /clone="N57, N58, r2-H, r2-R, r2-AA and r2-CC"
FT 5'UTR 1. .81
FT /citation=[1]
FT /citation=[2]
FT /note="putative"
FT /function="replication origin and subgenomic mRNAs"
FT CDS 82. .684
FT /citation=[1]
FT /citation=[2]
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89762"
FT /note="putative"
FT /gene="pv2"
FT /function="unknown, possible membrane associated function"
FT /protein_id="AAB39004.1"
FT /translation="MAVLLYDNDYYQLLVETNRHYGSYQKLFAHDGTKEDHYMSVSDSS
FT WILTFYKGELSSAMKSYCVCVGAHCLNVLSQTSNALHESKVKCWLCDKEAYMTTTHLKV
FT VKLTNLINGFELATESYQLCMKTHSADDPSKYIGEICFPPHLKGYMKDKQKFNHKFMVV
FT TNGFSTNNNFRPIRLTTETVEDSDQYVLVGNFKCPLT"
FT misc_feature 689. .1048
FT /citation=[1]
FT /citation=[2]
FT /note="putative"
FT /function="intergenic region; possible subgenomic mRNA
FT terminators"
FT CDS complement(1049. .3553)
FT /citation=[2]
FT /codon_start=1
FT /db_xref="SPTREMBL:Q86126"
FT /note="putative"
FT /gene="pc2"
FT /product="membrane glycoprotein"
FT /protein_id="AAB39005.1"
FT /translation="MYICILILPILVLITPSNSRSITKEDWMMSKDADPGKAIIQISCA
FT YRNKPCKQPTLLNGYYIEDGSVCYNHGPINLHETCFSGSYDNKIPVHEIFASCGGTRYV
FT DCKDEIVSKTTLVGFSQTQHTSKVLPINRENGLLVSYPYSEDKAFRGFVYVENITYCTE
FT NSTRNVLANDATSLEHPVVCEDGKLFASSAECDIRVSETQLHVPSCSNVKLPVYDDQIE
FT VCQNNFCKNVTCTVSSACVAYNRMDFLSRVKNYECSKTYKYYGYVLTLILIVFICMCGI
FT IVVNILICLKPVFWVIKTVMYALAGLCHKKPKLRMMEIDMAEVRVVDDTGDGLLLPEES
FT HAPNSNVPDIVRQKARRLSNGLIYVPYIFMLIAISLDSANCLCNDLLTSLSDVEVCTGK
FT DCTYSSKLQLTLYNTPQDFCFKSSSDVYKLRISKITINCLSRPLYYTNSYKKSIGKEEW
FT KCTESIRCSTDMSSTIWDKDDSLHYDYCISDFHVFSYCPFYHYNWKRILYTPTSRLACS
FT VKKCTVVQFEINGHLSKNGLVIHEFTGFQAVHEAGILNIGILNYNMQKLPAEYVECDGK
FT AYERKSNDLGSFDKELMGSIQCPTMRDAELLTSKCQTKIEALEDSKIISYEDNDGINKL
FT ADTLTEPLRGVVVSEKGISLDSMDILPMSISITSNVKISSILTSRISMNNTNCEIKGVE
FT RKLKKTVIKVMTPTRLVLSDVLICKDIASCSLTFNKDDRAECYTTSYKVDGTGEVIQCK
FT FLYSGDSVMCKYDVSPIDIVVVAPKIDLSSFDNVKTTSQTWSTFIMDMIRENPKLTIIA
FT SILPIGFFLKTMKKTYLELMDD"
FT 3'UTR complement(3554. .3620)
FT /citation=[2]
FT /note="putative"
FT /function="replication origin and subgenomic mRNA"
XX
SQ Sequence 3620 BP; 1174 A; 723 C; 618 G; 1105 T; 0 other;
L54073 Length: 3620 December 21, 2001 15:47 Type: N Check: 8112 ..
1 acacaaagtc ctgggtataa aagcaaagct tgaagaaact aaaaatctct
51 tcagagaact tgaataactt tcacaatcag catggctgtt ttactttatg
101 ataatgacta ctatcaattg ttggttgaaa cgaaccgaca ctatggctcc
151 taccagaaac tcttcgcaca tgatggcact aaggaagacc actacatgtc
201 tgtttctgat tcatcatgga ttctaacttt ctataaggga gagttgagtt
251 ctgccatgaa aagctattgt gtttgtgtgg gagcgcattg cctcaatgtc
301 ctttcgcaaa ccagcaatgc tcttcatgag tccaaagtta aatgttggct
351 ctgtgataaa gaggcatata tgacaactac acacctaaaa gttgtcaagc
401 tgactaatct aattaatggg ttcgagcttg ctactgagtc ttatcaactt
451 tgtatgaaga cgcatagtgc agatgaccca tctaagtaca ttggggaaat
501 ttgctttcca cctcacctga aaggctacat gaaagacaag cagaagttta
551 accataagtt catggtggtg actaatggct tttcaaccaa caataacttc
601 aggccaatca gattaacaac agagactgtt gaggactcag accaatatgt
651 tcttgttgga aatttcaaat gcccacttac atgaatgaca ctaaataaga
701 ctcaggtcca agaaaatcaa aaaattgaaa aaacaaaaaa acaaaaaaat
751 caaaaaaatc aaaaaaatct aaaaatcaag aaaatcaaaa aaatcagaaa
801 ataacaaaaa ccaaaaacca aaaaaaccaa aaaaacggaa aaaccaaaag
851 tacaaaagct atgaaaaacc atgcagaaag aaataaaggg gcaaaaaaca
901 acaaaagaat cgaataacca aaaaactaaa aaagtgtgct aagcacctta
951 tccggatagt gagcctagct cagtttgtat ttttggtatt ttgtgtttct
1001 gccgttcaga tattattgca gtcctttagc ctcttcatta tacttgcatc
1051 agtcatccat tagctctaga taggttttct tcatagtttt aaggaagaag
1101 cctatgggaa gaatagaagc tatgatagtc aatttggggt tctccctaat
1151 catgtccata ataaatgtac tccaggtctg actggttgtt ttcacattat
1201 cgaaacttga taaatctatc ttcggagcaa cgaccactat gtcaatagga
1251 gatacatcat atttgcacat gacactatca ccagagtata agaatttaca
1301 ctgtatcact tccccagtcc catcaacttt ataagatgtt gtgtaacatt
1351 ctgccctatc atctttatta aaagtgaggg aacagctagc tatatcttta
1401 catatcaaca catcactcaa gacaagtctt gttggagtca tcactttaat
1451 cacagttttc ttcaacttcc tctcaacacc tttgatctca cagtttgtgt
1501 tgttcataga tatacggcta gttaaaatac tggatatttt gacattggat
1551 gtgatagata ttgacatagg cagaatgtcc atgctgtcca aggatatacc
1601 tttctcagac actactactc ccctcaatgg ttctgtcaaa gtgtctgcca
1651 gcttattaat accatcatta tcctcataag agataatttt ggagtcttca
1701 agggcttcta tcttagtctg gcacttcgat gtcagcaatt ctgcatctct
1751 catagtaggg cactgaatgc ttcccatcaa ttctttgtca aaagaaccaa
1801 gatcattgct cttcctctca tatgccttgc catcacattc tacatactca
1851 gctgggagtt tctgcatatt gtaattgagt attcctatat ttagaatgcc
1901 tgcttcatga actgcttgga atcctgtgaa ttcatgaatc actagtccat
1951 tcttactgag gtgtccatta atttcaaatt gcacaactgt gcattttttt
2001 acagaacaag ccaatctgct tgttggagtg tatagtatcc tcttccagtt
2051 ataatgatag aatgggcaat acgaaaaaac atggaaatca gagatgcagt
2101 agtcataatg gagactgtca tctttgtccc aaattgttga actcatatcg
2151 gttgaacagc gaatgctctc agtacatttc cactcttctt tgccaataga
2201 ctttttgtaa ctgtttgtat aataaagagg tctggacaaa caattgatgg
2251 ttattttgga tattctcaat ttatacacat ctgatgaaga tttgaaacag
2301 aagtcctgtg gagtgttata taaggttagt tgaagcttag aactgtatgt
2351 gcagtctttc cctgtacaaa cttccacatc agataaacta gttagcaagt
2401 cattacagag gcaatttgca gagtccagtg agatagctat taacataaat
2451 atgtagggta catagatcag accattggat aatctcctag ctttctgcct
2501 gacaatatct ggaacattgc tatttggtgc atgcgactcc tcaggtaaga
2551 gcaatccatc accagtgtcg tcaactactc tcacctctgc catatctatc
2601 tccatcattc taagctttgg ttttttatga cacaaccctg ccagtgcata
2651 catgacagtc tttattaccc agaacactgg tttgaggcat atcagtatgt
2701 tgacaacaat gattccacac atacagataa atactatcaa tatcaaggtc
2751 agtacatagc catagtattt ataagttttt gaacattcat agtttttgac
2801 tctagatagg aaatccattc tattatatgc aacacaagca ctactgacag
2851 tgcacgtgac atttttacag aaattattct ggcaaacttc tatttggtca
2901 tcatacactg ggagcttaac attagaacaa cttggaacat gaagttgagt
2951 ctcactcact cttatatcac actcagcaga agaagcaaac agtttcccat
3001 cttcacatac aactggatgt tctaaacttg ttgcatcatt ggccaaaaca
3051 tttctagtgc tattctcggt gcaatatgtt atattctcaa catacacgaa
3101 gcctctaaat gctttgtctt ctgagtaagg ataagagacc agcaacccat
3151 tttctctatt aatgggtagg acctttgaag tgtgctgggt ttgagaaaaa
3201 ccgactagag ttgttttaga gacaatctca tctttgcaat caacatatct
3251 agttcctcca caagaagcaa aaatctcatg cactggtatc ttgttgtcat
3301 agctaccact gaagcaagtt tcatggaggt ttattggacc atgattgtaa
3351 cagacacttc catcttcgat ataatagcca ttaagcaacg ttggctgctt
3401 gcatggcttg ttcctataag cacatgatat ctggatgatt gctttaccag
3451 gatcagcatc tttgctcatc atccaatctt ctttggttat agatctagaa
3501 ttggatggtg tgatcaagac caagataggc agtattaaaa tacagatata
3551 catcttagta aatgaagatg tttcagcact ccttttaata taatcttttt
3601 atgataccca gactttgtgt