Sequence of DPV Shallot virus X
Shallot virus X non-structural protein, coat protein and 15 kDa protein genes, complete cds's.
ACC No: L76292
Dated: 2000-03-04 | Length: 2452 | CRC: -1726841937
!!NA_SEQUENCE 1.0
ID SVNSP standard; RNA; VRL; 2452 BP.
XX
AC L76292;
XX
SV L76292.1
XX
DT 08-MAR-1996 (Rel. 47, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 2)
XX
DE Shallot virus X non-structural protein, coat protein and 15 kDa protein
DE genes, complete cds's.
XX
KW coat protein; nonstructural protein.
XX
OS Shallot virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Allexivirus.
XX
RN [1]
RP 1-2452
RA Kaloshin A.A., Krutov A.A., Vishnichenko V.K., Ryabov E.V., Zavriev S.K.;
RT "Shallot virus X 3'-end of genomic RNA";
RL Unpublished.
XX
DR SPTREMBL; Q88457; Q88457.
DR SPTREMBL; Q88458; Q88458.
DR SPTREMBL; Q88459; Q88459.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2452
FT /db_xref="taxon:31770"
FT /organism="Shallot virus X"
FT /isolate="1995"
FT /dev_stage="mature"
FT CDS 1. .1143
FT /codon_start=1
FT /db_xref="SPTREMBL:Q88457"
FT /evidence=EXPERIMENTAL
FT /note="42kDa protein of ShVX is accumulated in infected
FT tissue"
FT /function="unknown"
FT /product="non-structural protein"
FT /protein_id="AAA88539.1"
FT /translation="MVIVTTFHIDAARDRIINCVNDVRNIVANQVVPATRKLGAIETTL
FT ESFKTETIAGLTNISDCVSLLRNLRSETTSNFNALLNRYVEPVGQAQTQWAQGLGEPEV
FT SKIEERTFFSNLDTALNSTQALLNHVPPARYTLPPASLPVNELFGQLHALHLNTLEWLT
FT HINHNLDSMLNMLNPVNLMSQGTPLSRLRDAVRTLTQDLGSIKSDQQKILASISTIDHS
FT DILHKLDSLDTGLRQLGIRLDVVVSSLNHMNERPPNASHDIASSSAATDRNPLPLYQAV
FT HPSLFCRTYGNILYNGVDSRIPMDITGRPASTSLKLTITVDCSEQSTKVNFTLLDDGYI
FT LLSDSIETKHKLQHIPSDCLSLIHARCPKFVYKFRGEGLC"
FT CDS 1167. .1955
FT /codon_start=1
FT /db_xref="SPTREMBL:Q88458"
FT /evidence=EXPERIMENTAL
FT /product="coat protein"
FT /protein_id="AAA88540.1"
FT /translation="MNEDDLNRLNASGDLNGANNQRIPAGPSGVNQPIPSVTAGGQNQF
FT RPSGGLGNQGSRPTESSNQDELLPTEAEIDAITSDVESNSVAPKASIREILDTLQAKRQ
FT NATPKDLFSLAWACYHNGSSRFVNLNTDAPCGITHAELKDLVEGFCTLRQFCSYYAKSC
FT YVSGKQQKKPPANWSRKGYPEEAKFAGFDFFNAVLSESSPAPPGGMRFKPTQAEILGHS
FT MNAKMSIVESRQSSHMVSTRADLLGRQQINVQPKPPMITF"
FT CDS 1955. .2338
FT /codon_start=1
FT /db_xref="SPTREMBL:Q88459"
FT /note="15kD of ShVX contains Arg-rich region and zink
FT finger motif; putative"
FT /function="unknown"
FT /product="15 kDa protein"
FT /protein_id="AAA88541.1"
FT /translation="MHPHDLNLLCCLHFSKPSFPNDLKTLLFRVCETSCKLNRRLLDNK
FT PFQGTSKCAKRSRAKRYNRCFDCGAYLYDDHVCKRFTSRSNSDCLSVIHQGPAKLYAEG
FT AYRANSDAEQLIMNDMLLIKSLK"
XX
SQ Sequence 2452 BP; 695 A; 668 C; 507 G; 582 T; 0 other;
L76292 Length: 2452 December 21, 2001 15:47 Type: N Check: 4060 ..
1 atggtaattg tcacaacctt ccacattgac gctgcacgcg atcgtatcat
51 aaattgtgtt aacgatgtca ggaatatcgt cgccaaccag gtcgtgcccg
101 ccacccggaa attaggagca atcgagacca cactggagag tttcaaaacg
151 gagaccattg ccggacttac aaacatttca gactgtgtgt ccttactcag
201 gaatttgagg tcagagacaa caagcaactt caacgcttta ctcaaccgat
251 atgtcgaacc ggtaggccaa gcacaaaccc aatgggctca agggctcgga
301 gagccggagg tgagcaagat tgaggaaaga accttctttt caaatttgga
351 cacagccttg aactccacac aagctctcct taaccacgta cctccagcga
401 gatacacact tcccccggct tccctgcccg tgaatgaact atttggacag
451 ttgcacgctt tacatttaaa cacgctggaa tggctgacgc acatcaacca
501 caacctggac tctatgctca acatgctcaa ccctgtaaat ctgatgtctc
551 aaggaactcc actcagccgt ttgagagacg cagtccgtac ccttacccag
601 gacttaggct ccatcaagtc ggatcaacaa aagattctgg catccatttc
651 aaccattgac cactcggaca ttttgcataa gttggattca ctagacacgg
701 gtctaagaca acttggaatt aggttagacg tcgttgtttc gagtctcaac
751 cacatgaacg aacgaccacc caatgcctca catgacattg ccagctcatc
801 tgcagcaaca gaccgaaacc ctttgccact gtaccaggcc gttcacccaa
851 gtctattttg ccgcacttat ggtaacatcc tctacaacgg cgtcgactcc
901 cgaattccga tggacataac aggtaggcca gctagcactt ctctcaagtt
951 aactatcacc gttgactgca gcgagcagag cacaaaagtt aacttcacgc
1001 tactcgatga tggatatatt ttgctgtctg attctatcga aaccaaacac
1051 aaacttcaac acatcccaag cgattgttta tccttaatac atgccagatg
1101 ccccaaattt gtttacaaat ttaggggtga aggtctgtgt taagttgtcg
1151 ggtagctcga aacacaatga acgaagacga tttgaatcgt ttgaatgcat
1201 caggggacct caacggcgcc aataatcaac gaatcccggc gggaccatcc
1251 ggcgtcaacc agccaatccc gagcgtaacc gcaggtggtc aaaatcagtt
1301 cagaccctcg ggaggacttg gcaaccaagg ctcacgccca actgaatcga
1351 gtaatcagga tgaactattg cccactgaag ctgagattga cgccatcact
1401 agcgacgtgg agtccaattc cgtagcaccc aaagcctcca ttcgcgaaat
1451 cctggacacc ttacaagcta agaggcaaaa cgccaccccg aaagatctat
1501 tctcattagc ctgggcctgc taccacaatg gatcctcaag gttcgtgaac
1551 ttgaatactg acgccccttg cggaataacg cacgcggagc ttaaagacct
1601 tgtggaaggc ttctgcacgc tcagacagtt ctgcagctac tacgctaaat
1651 catgctatgt ttcagggaaa cagcagaaga aacctcctgc taactggtct
1701 cgaaaaggat atcctgagga ggccaagttt gccggctttg atttcttcaa
1751 tgcagtgctg agtgagtctt ccccagctcc accgggcgga atgcggttca
1801 aacccacgca agctgaaatt ctcggccact caatgaacgc taaaatgtcc
1851 atagtcgagt cccgccaatc atcgcacatg gtttcaacta gagccgacct
1901 cctaggccgc caacagatta acgtacaacc caagccgccg atgataactt
1951 tctgatgcat ccccacgatc taaatcttct ttgctgccta catttctcga
2001 aaccttcctt tcctaacgac ctcaaaactc tccttttccg tgtttgtgag
2051 actagctgta aattaaaccg tagattatta gacaacaagc ctttccaagg
2101 cacctctaag tgtgctaaac gcagcagagc aaaacgttat aatagatgtt
2151 ttgactgtgg tgcctactta tatgatgatc atgtgtgcaa acgctttacg
2201 agtcgctcta attctgactg tttgagtgtc atccatcagg gtcctgctaa
2251 gctatatgct gaaggggctt accgagcaaa ctcagacgcc gaacagttaa
2301 ttatgaacga catgctatta attaaatctc ttaaataata aggcttggcc
2351 caagcctccc actgggttta cagggctctg gacgtgacca aagacactca
2401 cgattgttga tatagctaaa cttactctgc tacaacattt gtccccgcga
2451 ca