Sequence of DPV Bamboo mosaic virus
Bamboo mosaic virus, complete genome.
ACC No: L77962
Dated: 2006-12-08 | Length: 6365 | CRC: 1118684752
ID L77962; SV 1; linear; genomic RNA; STD; VRL; 6365 BP.
XX
AC L77962;
XX
DT 11-DEC-2001 (Rel. 70, Created)
DT 08-DEC-2006 (Rel. 90, Last updated, Version 3)
XX
DE Bamboo mosaic virus, complete genome.
XX
KW complete genome.
XX
OS Bamboo mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6365
RA Yang C.-C., Liu J.-S., Lin C.-P., Lin N.-S.;
RT "Nucleotide sequence and phylogenetic analysis of a bamboo mosaic
RT potexvirus isolate from common bamboo (Bambusa vulgaris McClure)";
RL Unpublished.
XX
CC Genome sequence lacks part of non-coding region.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6365
FT /organism="Bamboo mosaic virus"
FT /specific_host="Bambusa vulgaris"
FT /isolate="BaMV-V"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:35286"
FT 5'UTR <1. .92
FT /note="putative"
FT misc_feature 1. .6
FT /note="putative 5' potexvirus consensus sequence"
FT CDS 93. .4190
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="putative"
FT /db_xref="GOA:Q8UZ48"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8UZ48"
FT /protein_id="AAL40030.1"
FT /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLP
FT TAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYF
FT RRRGDVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFAS
FT SPQLETLLATIVLPPEATLRLKSLYPEIYTLHYMPQKFLYKPGGLSGGEYEHDYKDLTW
FT LKIGHVTTASMCLTVDRVESKAANHLLLIRRGRLKLSTYRSYDTPEPLVVVPKIFLPPK
FT YNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFY
FT VLGKLDSITSFETLLGDNILKRLFRPAIAKIQELRHWVSGPTAFMQLYKALQLVDVDFT
FT FEVTKNWETKQENHHEPELPKDAIDMLVQSLIGINYTDAATAEATSPNQQASESKPQSD
FT LPQPLQQTKCPEDAEAPAPLECKTAETAQEACKAGPSSNPTLNTSQEAPPSELKNSEER
FT TCPTLRELPWKAWLKLLRGLGFQGDLEQLDIEGDPIYPIKHIRHLPVEEFNSPITATLR
FT KMNRMPCKYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCKLAPRQTLISVI
FT HGAGGSGKSRALQEYMRNNKEDPIVTILPTNELRADWKAKLPAHDPDMFMTFENALLIP
FT KGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESVEGNTINDLSPSPV
FT VFSAYARYYINATHRNNQDLANALGVYSEKQGKTRISVSNHIEDGRHTLVPSQIKQRNY
FT VSMGRKTSTYAGCQGITASRVQVIIDNDTAKCSHQVLYTAFSRAADEIHFCNTMTDEKQ
FT FWAKVKCTPYLQAILNLTKEHSLPDPKPEPDEPLEPKAPVTHIAVENVVPLVEEITEPL
FT PEKHDREIYSESTGHSNCIQTENEFIQAFQHQQAKDETLFWATIEKRIVTSTPESNWTE
FT FKTKKPLGDILWLAYKEAMCLPAEPIKFDPDLWWKCADEVQNKYLQKPLHMIKNGILRQ
FT SPDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRLVREK
FT FCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHD
FT LPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQL
FT YAGDDCALNCEPKERESFKPLRAQFTLKSKPVTIRQGKGSWPEFCGNIITPYGYLKHPR
FT KTWAALHKAKLQGKNELKKTATAYALDVLPTYELGDAIHDIFTDNELTFHYQTIRTLHT
FT EAHTRVFTNHDAIFGEEGLFSS"
FT CDS 4217. .4978
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="putative"
FT /db_xref="GOA:Q8UZ47"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:Q8UZ47"
FT /protein_id="AAL40031.1"
FT /translation="MDNRITDLLTRSGYTRTSEPRGAGQQLVVHAVAGAGKTTLLREIL
FT NTIPGVTIHTAGTPDPPNLTLNYIKGQEPPCSKKYTILDEYPARAKWPEEAWDMLIADN
FT LQHTGPTTRPHYIKHTTYRLGPQTVKALQNLGYQLEFQHRVDQQDQGFSFTGLFDGPIY
FT GQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTVKDKVGLYIAFTRH
FT RKACHIRAPGVDPTRDVASSHGPAPSSGQTT"
FT CDS 4944. .5303
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="putative"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q8UZ46"
FT /protein_id="AAL40032.1"
FT /translation="MDQPLHLARPPDNTKAYLVLAIGVASALFLYTLTRNTLPHTGDNI
FT HHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFSMVIALATTLFLITKTILNPAPTTPRV
FT YAPLCLHCHRNHPPC"
FT CDS 5297. .5455
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="putative"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q8UZ45"
FT /protein_id="AAL40033.1"
FT /translation="MLNTDTLCIILFILILGILYNVLQQRQPPPCEIIINGHTISIRGN
FT CYHTTSS"
FT CDS 5497. .6225
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="putative"
FT /db_xref="GOA:Q8UZ44"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q8UZ44"
FT /protein_id="AAL40034.1"
FT /translation="MSGTGTGTGRGTGTGAGGTGGTGGTGDGGTGRGQQAAAQPWEAKF
FT TKDDLAAIEPKPASANVPNTKQWINIQAGLLKAGATDTNFMKVLLGLSLEAFDRGSSEA
FT TTWDGATEGVEHRAAANAIKEANCPIHKVTYHLAKPTFAIRQSKNLPPANYAKKNVPSQ
FT YKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMAYATFKTIQIKTANDQKGFNLNYNPN
FT VTQARLPNAPLPALPEPTSD"
FT misc_feature 6313. .6318
FT /note="putative 3' potexvirus consensus sequence"
FT polyA_signal 6332. .6337
FT /note="putative"
XX
SQ Sequence 6365 BP; 1924 A; 1892 C; 1334 G; 1215 T; 0 other;
l77962 Length: 6365 08-DEC-2006 Type: N Check: 263 ..
1 gaaaagcatt ccaaacaaac gaaaaggaaa caaaagacat agaaaacgaa
51 ctgccaattg tcccctacag tcgccccgtg cgtgcggcaa caatggcact
101 cgtctctaaa gtcttcgaca gcatcaccga cccatccctg agggcggtac
151 tccaagaaga agcgcactca caagtaaagc aggtgctcaa ggacacagcg
201 ctgtactcaa gatacgccct cctccccact gctgcaaaca cgctcgaacg
251 gtacgccatc ccccacaacc cgttcagcac taaattacac acacacgcag
301 cagcaaaagc ccttgagaat gacctctatc ggacagcctc atatctcctc
351 ccaaaagaaa gagtgtcatt ccttttcatg aagccgtcta agatgcaata
401 tttccggaga agaggagatg tcgacacctt catcaatgct gacatcgtcg
451 ctaaagacct cgccaggtat cctctggaga ctatctaccc ccgcctccca
501 gaaatcacta caaagatggc tttcattggg gatagcctgc actactttca
551 gcctgaggtg ctggaacaca tctttgctag ctccccacaa ctggagaccc
601 tactcgccac aatcgtcctc ccccccgaag ccacacttag acttaagagt
651 ctataccctg aaatctacac actacactac atgccccaga aattcctcta
701 caaacctggg ggactctcgg gcggggagta cgaacatgat tataaggacc
751 tgacctggct aaaaattggg catgtcacga ctgcatccat gtgcctcaca
801 gtcgaccggg tggagtctaa agcggccaat cacctactac tcatacgtcg
851 gggaagactc aaactcagca cttacagatc ctatgacacc cctgaacctt
901 tagtcgtggt gccaaaaatt ttcctccccc caaagtacaa tgcacaaaaa
951 cccattacca agacaaaagc aaattcatgg attctctacg tgaagtcagc
1001 tggggaacca aaaatcagag atgtttgggc caaactcagg caaaccatag
1051 caaactcaga acttaaccaa tatgagcctg cggagttgct acttttaaca
1101 aactactttt atgtgctggg caagttagac tccatcacat ccttcgagac
1151 cttgctcggc gacaatatac tcaaacgcct cttcagaccg gccattgcaa
1201 aaattcaaga actcagacac tgggttagtg gccccacagc cttcatgcaa
1251 ctttacaagg cgctgcaact cgtcgatgtc gacttcacct ttgaggtaac
1301 aaagaactgg gaaacgaaac aggaaaacca ccatgaacct gaactcccaa
1351 aagatgccat tgacatgctc gtccaatccc tcatcggtat taactacaca
1401 gacgcagcaa ctgctgaagc cacaagccct aaccaacaag caagcgagtc
1451 aaagccccaa tccgacctcc cacagcctct ccagcaaacc aagtgtcccg
1501 aggatgcaga ggcgcctgct ccactagaat gtaaaacggc tgaaactgcg
1551 caagaagctt gcaaagcagg gcccagctca aaccccactc tcaacaccag
1601 ccaagaggca cccccatcag aactcaaaaa cagcgaggaa cgaacatgcc
1651 ccacactgcg tgaactaccg tggaaggcgt ggctcaaact actcaggggc
1701 ctcgggttcc agggcgacct tgagcagttg gacatcgaag gggatcccat
1751 ttacccgatt aaacacatcc ggcatttacc ggttgaggag ttcaacagcc
1801 caatcacagc aaccctgaga aaaatgaacc ggatgccatg caaatactcc
1851 cccgacatcg agagagcagc cgcattcgca cgagatgtga tgagcaataa
1901 aacaggggcc atcctcccga agcagtctca cgagtggaag actacactta
1951 aaaggaaatg caaactcgct cctcgacaaa cccttatttc tgtaatacat
2001 ggtgcaggcg gcagcgggaa atcaagagcc ctgcaagaat acatgaggaa
2051 caataaggag gaccctatcg tcaccatcct cccgacaaat gagctaaggg
2101 ctgattggaa agctaaactg cccgctcacg atcccgatat gttcatgaca
2151 ttcgagaacg cactgctgat cccaaaaggc aacgtggtca tcatggatga
2201 ttacactaaa ctaccacgcg gatacattga ggcgtacgtg cagaactccc
2251 caatgctaga tctgctcata ctcacagggg accctaggca atccgaacac
2301 ttcgaatcgg ttgaagggaa cacgattaat gacctcagcc cctccccagt
2351 tgtcttcagc gcgtacgccc gctactacat caacgcaacc cacaggaaca
2401 accaggactt ggcaaacgcc ttgggggtct actcagaaaa acaagggaaa
2451 acgcgaatat cagtcagcaa ccacatcgag gacgggcgcc acacattagt
2501 tcccagtcaa atcaaacaaa gaaactacgt ctccatgggc aggaaaacct
2551 cgacctacgc gggctgccaa gggataaccg cttcacgtgt acaggtcatc
2601 atcgacaatg acactgcaaa gtgctcacac caggtcctat acacagcttt
2651 ctccagggcc gcggatgaaa tacacttctg caacactatg accgatgaaa
2701 aacaattctg ggcgaaagtg aagtgcaccc cgtatctaca ggcgatcctc
2751 aacctgacca aggaacactc cctgccggac ccgaagcctg aaccagacga
2801 acccctggag cccaaagccc ccgtcaccca cattgccgtg gagaatgtgg
2851 tgccacttgt ggaagaaatt accgagcccc ttcccgagaa gcacgaccgg
2901 gaaatctact cagaaagcac cggacactcc aactgcatcc aaactgagaa
2951 cgagtttatc caagctttcc aacaccaaca ggcaaaagac gaaactctat
3001 tctgggctac tattgaaaaa cgcatagtca cctcgacccc tgaatcaaac
3051 tggactgaat tcaaaacgaa aaagccccta ggcgatatcc tgtggctggc
3101 ctacaaggaa gctatgtgcc tgccagcaga gcccatcaag ttcgatccag
3151 atctttggtg gaaatgtgcc gatgaggtac aaaataagta cctacagaaa
3201 cctcttcaca tgatcaaaaa cggaatactc agacaaagcc cagactttgg
3251 agagcgccac attgccctat ttttgaagtc gcagtgggtg aaaaagaacg
3301 aaaaaattgg gacagtcaat gtcaaggctg gccaaaccat cgctgcattc
3351 taccagagca ctgttatgat ctttggtacg atggcgcgtt acatgaggct
3401 ggtccgagaa aagttctgcc caaagaacat cctaattaac tgcgaaattg
3451 atcagcccac ggcatcaaaa tgggtggata cgcactggaa attcgacagg
3501 ttggcgtaca caaacgactt tgaagcatat gaccagtcgc aggatggggc
3551 catgttgcag ttcgaagtca tgaaagcaag acaccatgat ctgcctgctg
3601 acttgattga gtcctatatt gaacttaagc taaacgcaaa aatattccta
3651 ggcacccttg gcatcatgag actgactgga gagggaccta catttgacgc
3701 caacactgaa tgcaacattg cttacacgca tgcccgattc cacataccca
3751 gaggcactgc acaactatac gccggggatg attgcgccct caactgcgaa
3801 cctaaagaaa gagaatcatt caaacctttg cgtgcgcaat tcaccctcaa
3851 atcaaaaccg gtgaccataa gacaaggaaa aggctcctgg cccgagtttt
3901 gcggtaatat catcactccc tatggctatc tcaaacaccc tcggaaaaca
3951 tgggccgcac tgcacaaggc caagctccaa gggaaaaatg aattgaagaa
4001 aaccgccacg gcctacgcgc tcgacgtgct accaacatac gaactagggg
4051 acgcaataca cgacatattc actgataacg agctgacttt ccattaccaa
4101 acaatcagaa ccctacacac agaggcacac actcgagtct tcaccaacca
4151 cgacgcaatc ttcggtgaag aaggtttatt ctctagttaa gtaacctatt
4201 agtttaataa ctaaccatgg ataaccgaat aactgaccta ctcacaagat
4251 ctggctatac aagaacatcc gaaccaaggg gtgctgggca gcaactagtc
4301 gtgcacgcgg tggctggtgc tggtaagacg acgctactcc gcgagatact
4351 gaataccatt ccaggagtca caatacacac cgcaggcacc cccgacccac
4401 caaacctcac cctcaactac atcaaaggcc aagagccccc ttgctcaaag
4451 aagtacacta tcctagacga gtacccagct agagccaagt ggccggagga
4501 ggcctgggac atgctgattg ccgacaacct ccaacataca ggccccacaa
4551 ctcgccccca ctacattaag catactacct acagacttgg cccccaaaca
4601 gttaaagcgt tacagaacct tgggtaccaa ctagaattcc aacaccgcgt
4651 ggaccagcaa gaccagggct tctcattcac tggactattc gatggcccaa
4701 tttatgggca accgataacg ctcgacacag cagcccacaa cctggccttg
4751 gctcacggat taccagcttt acaagcaacc caaacgagag ggctagaata
4801 cgacaccacc accattatct ctagcacccc tctgccaaca gtcaaggaca
4851 aggtgggcct atacattgca ttcaccaggc accgaaaagc ttgccacatc
4901 cgagcacccg gggttgatcc cacacgtgac gtggcctcct ctcatggacc
4951 agccccttca tctggccaga ccacctgaca acaccaaagc ctacctagta
5001 ttagctatag gagtagcgag tgcattattc ctctacacgc taacccgcaa
5051 cactctccca cacaccggcg acaatatcca ccacttgcca cacgggggca
5101 ggtacgtgga cggcaccaaa gggattctct acaacagccc cacctcgtca
5151 tacccatcct catccctccc tttctccatg gtcatcgcac tggccacgac
5201 cctcttcctc atcaccaaaa ccatcctcaa tccagcccca accacaccta
5251 gagtttacgc gcccctttgc ttgcattgtc accggaacca cccaccatgc
5301 tgaacactga cacgctctgc atcatcctgt tcatattaat attaggcata
5351 ctctataatg tactccaaca gcgtcagccc ccaccatgtg aaataataat
5401 aaacggacac actatatcca tcagaggcaa ctgctaccac actacctcca
5451 gctagggttt gttaagtttc ccttgtttgt aaattaaaca ctaaagatgt
5501 ctggaactgg aacaggaact gggcgaggga ctggaactgg tgcgggaggc
5551 actggaggca caggcggcac gggcgacgga ggaacgggta gagggcaaca
5601 agctgcagcc cagccttggg aagcgaagtt cactaaagac gacctggctg
5651 caattgagcc aaagcctgcc tcagccaatg tgccaaacac gaagcagtgg
5701 atcaacattc aagctggact cctcaaggcc ggagccacag acacaaactt
5751 catgaaagta cttcttggcc ttagcctcga agccttcgac aggggttcat
5801 cagaggccac cacctgggac ggagctactg agggcgtgga gcatcgtgcg
5851 gcagccaacg cgatcaagga agcaaactgc ccaatacata aagtcaccta
5901 ccacctagcc aaaccgacgt tcgccatcag gcaatcgaaa aaccttcccc
5951 cagcaaacta tgcaaagaag aatgtgccat cacaatacaa atggtgtgcg
6001 tttgatgctt ttgacggctt atatgatccc acctgccttg cctcagaact
6051 accctatgac gccccctcag agatagatcg aatggcgtac gctaccttca
6101 aaaccataca gatcaagacc gccaatgacc agaaagggtt taacctcaat
6151 tataacccta acgtcactca ggcccgactc cccaacgcgc ccctaccagc
6201 tcttcccgaa ccaacgtcag actaaacgtt gcatgatcgt aaaacatgcc
6251 cggcttaccg tgagccgcct ttgaaagaaa ggtttacacg gactctgttg
6301 cgttacgcac gtacctaact tgtgccggca gaataaagac cttttggttt
6351 ctacagtttt ttcca