Sequence of DPV Tacaribe virus
Tacaribe virus glycoprotein and nucleoprotein mRNAs, complete cds.
ACC No: M20304
Dated: 2000-03-04 | Length: 3432 | CRC: 1099032475
!!NA_SEQUENCE 1.0
ID TACNP standard; genomic RNA; VRL; 3432 BP.
XX
AC M20304; M65834;
XX
SV M20304.1
XX
DT 20-FEB-1989 (Rel. 18, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 5)
XX
DE Tacaribe virus glycoprotein and nucleoprotein mRNAs, complete cds.
XX
KW glycoprotein; nucleoprotein.
XX
OS Tacaribe virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-3432
RX MEDLINE; 87294516.
RX PUBMED; 3617928.
RA Franze-Fernandez M.-T., Zetina C., Iapalucci S., Lucero M.A., Bouissou C.,
RA Lopez R., Rey O., Daheli M., Cohen G.N., Zakin M.M.;
RT "Molecular structure and early events in the replication of Tacaribe
RT arenavirus S RNA";
RL Virus Res. 7:309-324(1987).
XX
RN [2]
RX MEDLINE; 91220659.
RX PUBMED; 2024465.
RA Iapalucci S., Lopez N., Franze-Fernandez M.T.;
RT "The 3' end termini of the Tacaribe arenavirus subgenomic RNAs";
RL Virology 182(1):269-278(1991).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3432
FT /db_xref="taxon:11631"
FT /mol_type="genomic RNA"
FT /organism="Tacaribe virus"
FT CDS 52. .1539
FT /codon_start=1
FT /db_xref="GOA:P18141"
FT /db_xref="UniProt/Swiss-Prot:P18141"
FT /note="glycoprotein"
FT /protein_id="AAA47902.1"
FT /translation="MGQFISFMQEIPIFLQEALNIALVAVSLICIVKGLVNLYRCGLFQ
FT LMVFLVLAGRSCSEETFKIGMHTKFQEVSLSLSALLTNQSHELPMLCLANKTHLYLKSG
FT RSSFKINIDSVTVLTRSEVNLTSINLTRSIDVFVHSPKLGSCFESDEEWVVAWWIEAIG
FT HRWDQDPGLLCRNKTKTEGKLIQINISRADGNVHYGWRLKNGLDHIYRGREEPCFEGEQ
FT CLIKIQPEDWPTDCKADHTNTFRFLSRSQKSIAVGRTLKAFFSWSLTDPLGNEAPGGYC
FT LEKWMLVASELKCFGNTAIAKCNQNHDSEFCDMLRLFDYNKNAIKTLNEETKTRVNVLS
FT HTINALISDNLLMKNKIRELMSVPYCNYTRFWYVNHTLSGQHSLPRCWMIRNNSYLNSS
FT EFRNEWILESDFLISEMLGKEYSERQGRTPITLVDICFWSTVFFTSTLFLHLIGFPTHE
FT HIRGEGCPLPHRLNSMGGCRCGKYLPLKKPTIWHRRH"
FT misc_feature 1576. .1579
FT /note="3' end of glycoprotein mRNA"
FT misc_feature complement(1585. .1587)
FT /note="3' end of nucleoprotein mRNA"
FT CDS complement(1644. .3356)
FT /codon_start=1
FT /db_xref="GOA:P18140"
FT /db_xref="UniProt/Swiss-Prot:P18140"
FT /product="nucleoprotein"
FT /protein_id="AAA47903.1"
FT /translation="MAQSKEVPSFRWTQSLRKGLSQFTQTVKSDILKDAKLIADSIDFN
FT QVAQVQRVLRKTKRTDDDLNKLRDLNIEVDRLMSMKSVQKNTIFKVGDLARDELMELAS
FT DLEKLKDKIKRTESNGTNAYMGNLPQSQLNRRSEILRTLGFAQQGGRPNGIVRVWDVKD
FT SSKLNNQFGSMPALTIACMTVQGGETMNNVVQALTSLGLLYTVKYPNLSDLDKLIPNHE
FT CLQIITKEESSINISGYNLSLLAAVKAGASILDGGNMLETIRVSPDNFSSLIKNTLQVK
FT RREGMFIDDRPGSRNPYENLLYKLCLSGDGWPYIGSRSQIMGRSWDNTSVDLTKKPDAV
FT PEPGAAPRPAERKGQNLRLASLTEGQELIVRAAISELDPSNTIWLDIEDLQLDPVELAL
FT YQPAKKQYIHCFRKPHDEKGFKNGSRHSHGILMKDIEDAVPGVLSYVIGLLPPNMVITT
FT QGSDDIRKLLDIHGRKDLKLIDVKFTSDQARLFEHQVWDKFGHLCKQHNGVIISKKNKS
FT KDSPPSPSPDEPHCALLDCIMFHSAVSGELPKEEPIPLLPKEFLFFPKTAFAL"
XX
SQ Sequence 3432 BP; 887 A; 742 C; 767 G; 1036 T; 0 other;
M20304 Length: 3432 June 22, 2004 14:38 Type: N Check: 9081 ..
1 ggcatttctt gtccatattt gcctaactga accaggtgaa tcactcccac
51 catggggcaa ttcattagtt tcatgcagga gatacctatt ttcttgcaag
101 aagcactcaa cattgcattg gtggcagtca gcctcatctg tatagtgaaa
151 ggcttggtga acctatacag gtgcggactg tttcaattga tggtcttcct
201 tgtgttggct ggcagatcat gttcagagga aacatttaag ataggtatgc
251 acacaaaatt ccaagaggtg tccctctctt taagtgcact tttgaccaat
301 cagtctcatg aacttcctat gttatgttta gccaacaaaa cacatctcta
351 tctaaagagt ggtagatcca gtttcaaaat caacattgat agtgtcactg
401 tgttaacaag atctgaagtg aacttaacat caattaattt gacgagatcg
451 atcgatgtct ttgttcactc tcctaaactt ggttcttgtt ttgaaagtga
501 tgaggagtgg gttgttgctt ggtggattga agccatcggt cacagatggg
551 accaggaccc aggtcttcta tgcaggaata aaaccaaaac agagggtaaa
601 ctgatccaga ttaacatttc aagagctgat ggcaatgttc actatggatg
651 gagattaaaa aatggacttg atcatattta cagaggacgt gaagaaccct
701 gttttgaggg tgagcagtgt cttatcaaaa ttcaacctga agactggccg
751 actgactgta aggctgacca cacaaacaca ttccgctttt tatcaaggag
801 ccaaaaaagc atagctgtag gaaggactct caaggcattt ttctcctggt
851 cgcttactga ccctttaggg aacgaagccc ctgggggata ctgtcttgaa
901 aagtggatgc ttgttgctag cgaattaaag tgttttggga acactgcaat
951 tgccaagtgc aaccaaaatc acgactcaga gttttgtgac atgctaaggc
1001 tgtttgatta caacaaaaat gctataaaaa cactgaatga ggagactaag
1051 acgagggtga atgtcctgag ccacaccatc aatgctctga tctcagacaa
1101 ccttctgatg aagaataaga ttcgagagct gatgagtgta ccttattgca
1151 actacacacg attttggtat gtcaatcaca cactttcagg acagcactct
1201 cttccaagat gctggatgat aagaaacaat tcttacctca actcatctga
1251 atttagaaat gagtggattc ttgaaagtga tttcctcatt tctgagatgc
1301 tgggtaagga gtattcagag agacagggga gaactccaat cactttagtg
1351 gacatttgtt tttggagtac agtgttcttc actagcacac tattcttgca
1401 cctcattggt ttcccaactc atgaacacat tcgaggggaa ggttgccctc
1451 tcccccatag attgaacagc atgggaggat gtaggtgtgg gaagtatctg
1501 cctctgaaga agccaactat ttggcatcgt agacattagg acagcacatt
1551 tgcgctccca cgcgctttgc ccgggccggt gtggcccccc gatccgcgtt
1601 gccgcggatc ggggaggcac ctgtggtgcg gaagtcttac agctcacagt
1651 gcaaaagctg ttttgggaaa gaaaaggaac tctttgggta gtagtggtat
1701 tggttcctcc ttgggtagtt ctccactcac ggctgagtgg aacattatgc
1751 agtccagcag tgcacagtga ggttcatcag gactggggct tggtggagaa
1801 tctttgctct tattcttctt gctaataatc accccattat gttgtttgca
1851 gaggtggccg aatttatccc acacttggtg ctcgaatagt cttgcttgat
1901 ctgaagtgaa cttaacatca attaatttga gatctttcct tccgtgaata
1951 tctagaagct ttctgatgtc atcagatcct tgtgttgtaa tcaccatgtt
2001 gggaggtagt aaccctatga cataactgag cacacctggc acagcatcct
2051 caatgtcctt cattagaatg ccgtgagaat gtctgctccc atttttaaat
2101 cccttctcat catgtggctt tctgaagcag tggatgtatt gtttctttgc
2151 aggttgatat aatgcaagct ctactgggtc aagttggagg tcctcgatgt
2201 ccaaccaaat agtgttggag gggtcaagtt cactaatagc agctctgact
2251 attagttctt gcccctctgt gaggcttgcc agtcttaaat tttgcccctt
2301 tctttctgct ggccttggtg ctgctcctgg ttctggcact gcatccggct
2351 tcttggtcag atctacgctc gtgttgtccc aggatcgccc cataatttgc
2401 gatcgagagc ctatataggg ccagccatca cctgacaaac acagtttgta
2451 gagtaaattt tcgtaggggt tcctacttcc aggtctgtcg tcaataaaca
2501 taccctccct tctcttgact tgtaaggtgt ttttgatcag gctagagaag
2551 ttgtcgggac tcactctgat tgtctccaac atgttaccac catcaaggat
2601 ggaggctcct gcttttactg ctgccaacag actgaggttg taacctgaaa
2651 tgttaattga actctcttct ttggttataa tttgcagaca ctcatggttt
2701 gggatgagct tgtcaagatc agaaagattt gggtatttca ctgtataaag
2751 aaggcctaaa gaggtcaatg cttgaactac attgttcata gtctcccctc
2801 cttggacagt catacatgca attgttaatg caggcatgga tccaaattga
2851 ttgttcagtt tgctggaatc tttcacatcc caaactctaa caattccatt
2901 gggacgacct ccctgctgag caaatccgag tgttctcaaa atctcactcc
2951 tcctgttgag ttgagattgt ggcagatttc ccatgtaagc attggtacca
3001 ttgctctcag ttctttttat tttgtctttt agcttttcaa gatcggaggc
3051 cagttccatt agttcatccc ttgccaggtc accaactttg aagattgtgt
3101 tcttctgaac acttttcata gacatcagcc tgtcgacctc tatattgaga
3151 tccctcaatt tgttcaagtc atcatcggtt cttttggtct ttctaagcac
3201 tcgttgaact tgagcaacct ggttgaagtc aatgctgtcg gcaatcagct
3251 tagcgtcctt taaaatatct gacttgactg tttgggtgaa ttgactcaat
3301 ccctttctaa gagactgggt ccatctgaag cttggcactt ccttggattg
3351 agccattatg gcgatcaaag caaggatttc aaaaaagagc tcagtgaaag
3401 agttagacaa tttgcctagg atccactgtg cg