Sequence of DPV Tobacco necrosis virus A
Tobacco necrosis virus RNA dependent RNA polymerase and coat protein genes, complete cds.
ACC No: M33002
Dated: 2005-04-17 | Length: 3684 | CRC: 1600981009
!!NA_SEQUENCE 1.0
ID TNCPOLY standard; genomic RNA; VRL; 3684 BP.
XX
AC M33002;
XX
SV M33002.1
XX
DT 23-JUL-1990 (Rel. 24, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 10)
XX
DE Tobacco necrosis virus RNA dependent RNA polymerase and coat protein genes,
DE complete cds.
XX
KW .
XX
OS Tobacco necrosis virus A
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3684
RX MEDLINE; 90320143.
RX PUBMED; 2371773.
RA Meulewaeter F., Seurinck J., Van Emmelo J.;
RT "Genome structure of tobacco necrosis virus strain A";
RL Virology 177(2):699-709(1990).
XX
RN [2]
RP 3661-3684
RA Meulewaeter F.;
RT ;
RL Submitted (16-JAN-1996) to the EMBL/GenBank/DDBJ databases.
RL Frank Meulewaeter, Plant Genetic Systems N.V., Gent, Belgium
XX
RN [3]
RP 1-3660
RA Meulewaeter F.;
RT ;
RL Submitted (20-MAR-1990) to the EMBL/GenBank/DDBJ databases.
RL Frank Meulewaeter, Plant Genetic Systems N.V., Gent, Belgium
XX
CC On Jan 31, 1996 this sequence version replaced gi:310914.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3684
FT /db_xref="taxon:12055"
FT /mol_type="genomic RNA"
FT /organism="Tobacco necrosis virus A"
FT /isolate="TNV-A-FM1B"
FT /clone="pFM2[0,1,2,3]"
FT CDS 60. .2234
FT /codon_start=1
FT /db_xref="GOA:P22958"
FT /db_xref="UniProt/Swiss-Prot:P22958"
FT /note="putative; readthrough stop codon"
FT /transl_except=(pos:666. .668,aa:OTHER)
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAA86434.2"
FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQKDLLAI
FT EDSEHLDDINECFEESAGAQSQRTKVVADGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA
FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL
FT MNTHATRAAVRGMDNVQGEGWWNNRLGIGGQVGLAFRSKXGCLERRPGFSTSVSRGEHP
FT DLVVIPSGRPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFYVEGPNGLQDAP
FT KPVKGAFRTLDKFRDLYTKNSWRHTPVTSEQFLMNYTGRKLTIYREAVDSLSHQPLSSR
FT DAKLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEI
FT TVFKGFTLEQQGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALEYEHEFYLRDYPNDK
FT QLKWLLKQQLCNVGTAFASDGIIKYKKKGCRMSGDMNTSLGNCILMCAMVYGLKEHLNI
FT NLSLANNGDDCVIVCEKADLKKLTSSIEPYFKQFGFKMEVEKPVDIFERIEFCQTQPVF
FT DGSQYIMVRKPSVVTSKDVTSLIPCQTKAQYAEWLQAVGECGMSINGGIPVMQNFYQKL
FT QTGIRRTKFTKTGEFQTNGLGYHSRYMHRVARVPSPETRLSFYLAFGITPDLQEALEIF
FT YDTHKLELDDVIPTDTYQVSGEHLINGLPN"
FT CDS 2218. .2436
FT /codon_start=1
FT /db_xref="UniProt/Swiss-Prot:P22960"
FT /note="ORF 3"
FT /product="unknown"
FT /protein_id="AAA86435.1"
FT /translation="MDYQTDVTEDNVQIRGRARSVEGKKHNGSGLTGVKRHAVSETSQK
FT SQQGTGNGTMTNIAEEQTITVTYNFNF"
FT CDS 2440. .2610
FT /codon_start=1
FT /db_xref="UniProt/Swiss-Prot:P22961"
FT /note="ORF 4"
FT /product="unknown"
FT /protein_id="AAA86436.1"
FT /translation="MAACRCCDTSPGITLFPYFAILILILAILVVGTPNQQYHHSPSTY
FT EYKTQHISIAK"
FT CDS 2613. .3443
FT /codon_start=1
FT /db_xref="GOA:P22959"
FT /db_xref="HSSP:4SBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="InterPro:IPR008975"
FT /db_xref="UniProt/Swiss-Prot:P22959"
FT /product="coat protein"
FT /protein_id="AAA86437.1"
FT /translation="MAGKKNNNNGQYIILRTPEQQVEIDQRNARRAQMGRMKKARQPVQ
FT RYLQQHGLRNGLSGRGGYIVAPTSGGVVTRPIVPKFSNRGDSTIVRNTEILNNQILAAL
FT GAFNTTNSALIAAAPSWLASIADLYSKYRWLSCEIIYIPKCPTTTSGSIAMAFTYDRND
FT AAPTARAQLSQSYKAINFPPYAGYDGAAYLNSNQGAGSAIAVQLDVTKLDKPWYPTISS
FT AGFGALSVLDQNQFCPASLVVASDGGPATATPAGDLFIKYVIEFIEPINPTMNV"
FT CDS 3467. .3646
FT /codon_start=1
FT /db_xref="UniProt/Swiss-Prot:P22962"
FT /note="ORF 6"
FT /product="unknown"
FT /protein_id="AAA86438.1"
FT /translation="MPKVESHHWRRRRILGNRLDGRGVVPPTTHHSGYQWYTTMAGSAK
FT VLCTKNPWKRGGGG"
XX
SQ Sequence 3684 BP; 1037 A; 900 C; 901 G; 846 T; 0 other;
M33002 Length: 3684 May 10, 2005 10:09 Type: N Check: 4315 ..
1 agtattcata ccaagaatac caaataggtg caaggcctta ctcagctaaa
51 gagtctaaaa tggagctacc aaaccaacac aagcaaacgg ccgccgaggg
101 tttcgtatct ttcctaaact ggctatgcaa cccatggaga cgacagcgaa
151 cagtcaacgc tgcagttgcg ttccaaaaag atcttctcgc cattgaggat
201 tccgagcatt tggatgacat caatgagtgt ttcgaggagt ctgctggggc
251 acaatctcag cgaactaagg ttgtcgccga cggagcatat gcccccgcaa
301 aatccaacag gacccgccga gttcgtaagc agaagaagca caagtttgta
351 aaatatcttg tcaacgaagc tcgtgccgag tttggattgc ccaaaccaac
401 tgaggcaaac agacttatgg tccaacattt cttgctcaga gtgtgcaagg
451 attggggcgt tgttactgcc cacgtacacg gcaatgttgc actagctttg
501 ccactggtgt tcatcccaac ggaagatgat ctgctatcac gagcattgat
551 gaacacacat gctactagag ccgctgtacg aggcatggac aatgtccaag
601 gggaggggtg gtggaacaat aggttgggga ttgggggcca ggtcggactg
651 gccttccggt ccaaataggg gtgccttgaa aggaggccag gattctccac
701 gtccgtttcg cgtggggaac atcctgatct ggtggtcata ccatcagggc
751 gccctgagaa acagcgtcag ttgttacgct atagtggtat aggcggccat
801 ttattaatcg gcatccacaa caactctctt tccaacctgc gtaggggctt
851 gatggaaaga gtattctatg tcgaggggcc caatgggctt caagacgccc
901 ctaagcccgt caagggagct tttcgaaccc ttgataagtt tcgtgatctc
951 tatactaaaa atagttggcg tcatacccct gtaactagtg aacaattcct
1001 aatgaattac acgggcagga aactgactat ttacagagag gcggttgata
1051 gtttgtcgca tcaacccctt agctcacgag atgcgaaact aaagacattc
1101 gtgaaggccg aaaaattaaa tctttctaag aagcctgacc ctgctcccag
1151 ggtcatccaa cctagatcgc ctcggtataa cgtttgtttg ggcaggtacc
1201 tccgacatta tgagcatcac gcgtttaaaa ccattgccaa gtgctttggg
1251 gaaatcacgg tcttcaaagg gtttactctg gagcaacaag gggaaatcat
1301 gcgctcgaag tggaataaat atgttaatcc cgtcgcagtc ggactcgacg
1351 ccagtcgttt cgaccaacac gtgtctgttg aagcactcga gtatgagcat
1401 gaattttacc tcagagacta cccaaatgat aaacagctaa aatggctgct
1451 aaagcagcaa ttgtgcaacg taggaacggc attcgccagt gacggcatta
1501 taaaatacaa gaagaagggt tgtagaatga gcggagacat gaacacgagc
1551 ttgggcaact gcattctaat gtgcgccatg gtctacgggt tgaaagaaca
1601 cttaaacatc aatttgtccc ttgcaaataa tggggatgac tgcgtcattg
1651 tctgtgagaa agcggattta aagaaattga caagcagcat cgagccatat
1701 ttcaagcagt ttggattcaa gatggaagtg gaaaaacccg tggatatatt
1751 tgagcgcata gaattttgcc aaacccaacc tgtgttcgat ggatcccagt
1801 acatcatggt acgcaaacct tctgtggtaa catctaaaga cgtcactagc
1851 cttatcccat gtcaaacgaa agcacaatac gcagaatggc tgcaagctgt
1901 aggtgagtgt ggcatgagca ttaacggtgg gattcctgtc atgcagaatt
1951 tctaccaaaa gctccaaact ggcatccgcc gcacaaaatt caccaagacc
2001 ggcgagttcc agacgaacgg attggggtat cactctagat atatgcatag
2051 agtggcccgg gttccttcgc ctgaaacccg tttatccttc tatctagctt
2101 tcggtatcac accagacctc caagaagcat tggagatctt ctatgatacc
2151 cacaagcttg agttggatga tgttatccca actgatacct accaagtgtc
2201 aggagagcat ttgatcaatg gattaccaaa ctgatgtaac ggaggacaat
2251 gtgcaaatac gcggtcgggc taggagcgtt gagggtaaga aacacaatgg
2301 ttcgggatta actggcgtta agcgtcacgc ggtgagcgaa acatctcaga
2351 aatcacagca aggtactggc aatggaacta tgaccaatat agccgaagaa
2401 cagaccatta ccgtgacata caactttaac ttttaagtta tggctgcgtg
2451 tcgctgttgt gatacttcac caggtattac actattccct tactttgcaa
2501 ttctcatcct tatattggca atacttgttg tagggactcc caatcaacaa
2551 tatcaccatt ctccaagcac ttacgagtac aagactcaac acatttcgat
2601 cgcaaaatag acatggcagg aaagaagaac aacaacaacg gtcagtatat
2651 aatactgcgt actccagagc aacaggtgga gatagaccag cgcaacgccc
2701 gtcgtgctca aatgggtcgc atgaagaagg ctagacagcc cgttcagcga
2751 tacttacagc aacacgggtt gcgaaacgga ttgtccggta gagggggcta
2801 catagtggct cccacctccg ggggggttgt cactcgaccc atagtgccga
2851 aattctccaa caggggagat tccactatag tccgtaacac tgagattttg
2901 aacaaccaaa tcttagcggc gctaggcgca ttcaatacaa caaactccgc
2951 actgattgca gcagcaccat catggctggc tagcatcgct gatctttaca
3001 gtaaatacag atggctctca tgtgagatca tctacattcc aaaatgcccc
3051 accaccacca gtggatcaat tgccatggct ttcacatacg acagaaatga
3101 cgctgcaccc accgcaaggg ctcagctgtc acaatcttac aaggccatca
3151 attttccacc gtatgcggga tacgacggag cagcatattt gaattcgaac
3201 cagggagctg ggtcagccat cgccgttcaa cttgatgtta ccaagttgga
3251 caagccatgg taccccacta tctcctctgc cggcttcggg gcgctcagcg
3301 tcctcgatca gaaccaattc tgccccgcgt cccttgtggt cgctagcgat
3351 gggggacccg ctactgctac tccagcaggg gaccttttca tcaagtacgt
3401 gattgagttc attgaaccaa tcaacccaac aatgaacgtc tagttctttg
3451 tactgtaact tggctaatgc ctaaggtgga gtcacaccat tggagacgga
3501 gacggatcct gggaaacagg cttgacgggc ggggggtggt gcccccgacg
3551 acgcatcact ccggatacca atggtacacc actatggcag ggtctgccaa
3601 ggtcttgtgc accaagaacc cctggaaacg ggggggaggg gggtagcaca
3651 tatcatccag attgaggggc ctttgcccca cccc