Sequence of DPV Rice tungro bacilliform virus
Rice tungro bacilliform virus ORF2, ORF3, and ORF4 genes, complete cds.
ACC No: M65026
Dated: 2000-03-04 | Length: 8000 | CRC: 1872555782
!!NA_SEQUENCE 1.0
ID LERTUORFS standard; circular DNA; VRL; 8000 BP.
XX
AC M65026;
XX
SV M65026.1
XX
DT 24-JAN-1992 (Rel. 30, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 7)
XX
DE Rice tungro bacilliform virus ORF2, ORF3, and ORF4 genes, complete cds.
XX
KW .
XX
OS Rice tungro bacilliform virus
OC Viruses; Retroid viruses.
XX
RN [1]
RC Erratum:[Virology 1992 Feb;186(2):798]]
RP 1-8000
RX MEDLINE; 92024093.
RA Qu R.D., Bhattacharyya M., Laco G.S., de Kochko A., Rao B.L.,
RA Kaniewska M.B., Elmer J.S., Rochester D.E., Smith C.E., Beachy R.N.;
RT "Characterization of the genome of rice tungro bacilliform virus:
RT comparison with Commelina yellow mottle virus and caulimoviruses";
RL Virology 185(1):354-364(1991).
XX
RN [2]
RP 1-8000
RA de Kochko A.;
RT ;
RL Submitted (01-JAN-1991) to the EMBL/GenBank/DDBJ databases.
RL Cell biology, TSRI, 10666 N. Torrey Pines Rd., La Jolla, CA 92037, USA
XX
DR SWISS-PROT; P27499; YP12_RTBVP.
DR SWISS-PROT; P27500; YP24_RTBVP.
DR SWISS-PROT; P27501; YP46_RTBVP.
DR SWISS-PROT; P27502; POL_RTBVP.
XX
CC On Jun 26, 1996 this sequence version replaced gi:333965.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8000
FT /db_xref="taxon:10654"
FT /organism="Rice tungro bacilliform virus"
FT CDS 665. .997
FT /codon_start=1
FT /db_xref="SWISS-PROT:P27499"
FT /note="ORF2"
FT /protein_id="AAB03093.1"
FT /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKTAADVNL
FT ASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI
FT KRKYPA"
FT CDS 994. .6021
FT /codon_start=1
FT /db_xref="SWISS-PROT:P27502"
FT /note="ORF3"
FT /protein_id="AAB03094.1"
FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE
FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN
FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG
FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD
FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR
FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQ
FT AMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE
FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE
FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI
FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI
FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR
FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG
FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN
FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS
FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKTCET
FT QYCKTCSDQLALEVTEVKKPTKEETMIDDLKLNVKNLEFRVTILEHKVEMQNLQDKFET
FT MQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSG
FT STHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIKYK
FT LGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFARKH
FT GGRPPLFSNIPETYNKIPHLHSYQPQPILGYKNEIGNQSLITMVKELEALGFIGDDITK
FT NRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAA
FT FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF
FT HHMKLKDEFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI
FT LIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIV
FT DKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWN
FT IIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYAS
FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR
FT WIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESHSIDSPESI
FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA"
FT CDS 6042. .7211
FT /codon_start=1
FT /db_xref="SWISS-PROT:P27501"
FT /note="ORF4"
FT /protein_id="AAB03095.1"
FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSSRLSHVSRGLLDHL
FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLKDQVSLLQKQNSELRARIATN
FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD
FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESILSLSQKKGEDLLQKGVVIFN
FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE
FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED
FT EGEVVYISKYTKIIKVTKEHAWAWPEHDGDTMSCTTSIEDEWIHRMDNA"
FT misc_feature join(8000,1. .668)
FT /note="putative ORF1, stop codon at nucleotide 67;
FT putative"
XX
SQ Sequence 8000 BP; 3270 A; 1250 C; 1444 G; 2036 T; 0 other;
M65026 Length: 8000 December 21, 2001 15:56 Type: N Check: 8864 ..
1 tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta
51 gtcaaactaa ttacataagt tccgaagagg gatcttattt ctcaaaatat
101 tgagtcacgt tacgaaaaac ttgaattctt agacttagca gtctggggaa
151 aagagaaaaa acaaaaatat ttactatcta ccgataatat tagcttttat
201 tgttattttg atactagtaa aactagtgaa tcagaaagaa agcatacctt
251 tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc
301 attctgaaaa aaccaaaaat attaaggaag aattagaaaa atatagtcag
351 tccctagata agatattaga tttaaaacct actaaaaaac aagttgaaaa
401 actattagaa aatcaaaact taattagcaa gaactttgat tatatcaaag
451 aacaaaacac tcaactagaa aaatccctaa gaaaaacagt taagttagaa
501 gactccatta atactctatt agtagaaata caacaagcca gacctaagga
551 agtagaatta agaactctta aaatagcaga acagaactct aaggcaatag
601 aaaaatttga gcaagaaatt aaggacttaa gagaaatcct ggaattcctt
651 aagcatcaag ctacatgagc gctgattatc caactttcaa ggaagccctt
701 gaaaagttta aaaacctaga atcagataca gccggaaaag ataagtttaa
751 ttgggtattt actctagaaa atataaagac agctgcagac gtaaatttag
801 catctaaggg tttagtacaa ctttacgctt tacaagaaat tgataaaaag
851 attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag
901 tagttcagca ggagctatag tacctgcagg aagtaacacc caaggtcagt
951 acaaagcacc acctaagaaa ggaattaaaa gaaaatatcc agcatgagcc
1001 ttagaccatt tactggtact tctagaacta taacccaaga ttcaacctct
1051 gaatctaata taaaaaaggg aaaaaactca acaaaaagag aattaataga
1101 agaagtagat gttaatcaag aagtagagaa ctttgattgg aaaaaactat
1151 caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaggtt
1201 aagttaaaac aacaatccat agtctcagca tataaagaag aagctattag
1251 tgtaactcat aatgcatata ctactacttt atttccacaa gaagtaatta
1301 aaaatgttaa gaatcaggga aaactttatt atcatatagg catgatggcc
1351 ataggagtta aaggacttca tagaagaaaa ataggaacta aagtcatgat
1401 aatgttttat gatgatagtt tcggtaaagc tagggaagct agcattggat
1451 caatagaaat ggatatgaac gccggttgtg gagtgttcta ctcctgcccc
1501 gactttgcaa aatatattaa agatttatca caccttaaga tagggataca
1551 aaccctagga tatgaaaatt atgaaggaaa gaacctttca gtagcaatca
1601 aaactatagg aagattgacc accaatatac aatcaaaata taagataaat
1651 gtgaaagata ttgtagaaca gatatcatca caaggaatca ttatggtagc
1701 acccatggaa atagattcat cacacctaga tgggaatgaa tgggatctta
1751 gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcctta
1801 atatatcaga atttacaagg aggagaatcc ttaagatttt caaactataa
1851 acaaactaga atgcatgatc ctactgaaaa caattcagat gaagatgaag
1901 atttaaaaat cttaggagaa caactaaata ttaaaatggc aagattttac
1951 acaatgcaaa ccccagaaga agaattacga gaagtaattc aacaattaga
2001 aagagaaaaa caagccatga tagcaaaact agaagctaaa atgaaagagt
2051 catctaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat
2101 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg
2151 attaactgga tgggaagact tagatcagga ttccatagaa accgaagaaa
2201 taactgaatg ggaaaatcct aatcaagtac ttcatagaga aattagagca
2251 tataaatcag tatccgaaca aatagaagat atattcggag aactactaaa
2301 ggaacacgga aactatgata tggccctcaa aaacctagaa gaaaaatacg
2351 acctagataa aatagaaaag gccaaatcta tagaagaaat agctaagtca
2401 tctacatcgt cagaaattag gccaactaaa cgacctaaag aagaacaaac
2451 agcctatgaa gatgatatga gagatgattg gaaaagaaaa gaattaacag
2501 taaatcccat agaagcctca aaagatagaa attttgaaag aataggaagt
2551 tcatataaga aaaactttta ccctagtaga agtgaaatat taaacctaga
2601 taacgttccc ccacaatttt actatgatca actagtaacc tgggaaggaa
2651 tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg
2701 tcttggatgg atggtagaat aacaggatta gtcctatact tagtccaaga
2751 ttggatatct aaaaatcagg cagcctataa tgatataaaa tctagaggtg
2801 atagacctga aaacttcgta aaaatggtaa aagataggtt cttaatagaa
2851 gatcctacag atgaaagaag aacagcatta caaaggttag cacaaagaga
2901 attagaagcc ttaaactgcg aagatcctac taaaattcaa ccatttatgg
2951 ctgaatatct taagaaagca tcagaagcca aaaaaggatt tgatgtagtt
3001 tatgtagaaa gactctttga tagattacca gaagctgtag gaaaggtagt
3051 aaaagcggac tttgttaaag acggtaattc ttatgaagca ggaataggaa
3101 tagcagtttc atatatatcc acatggatga gagcaaaatg cattaaggaa
3151 acagaagcta aaactcaaaa gaaagcatcc ttagcattct gtagatccat
3201 atatactata ggagattata agaaacgaaa aatcctaaaa agagttacaa
3251 actataataa aaataggaga aaaaactatg tcagaagacc tagcatcaag
3301 aaaaaatgta gatgttatat ctgtcaagat gaaaatcacc tagctaatag
3351 atgtcctaga agatatacta atcaggctag agcaagtcta atagatggat
3401 tagacgaaga tatagtatct atagcatcag atgacgagga tattgaaaat
3451 tttcttgaaa taatagaact tgatgaattt atagcacatt ctagtcaaga
3501 acatgaacat acatgggaaa tcggaggaaa gaaagataag gtatgtgaaa
3551 tttgcagtta ttttacggat tataataaaa ctgttagctg taaaacttgt
3601 gaaacccaat actgcaaaac atgttctgat caactagcac tagaagtaac
3651 agaagtcaaa aaacctacga aagaagaaac aatgatagac gacctaaaat
3701 taaatgttaa aaatctagaa tttagagtca ccattctaga acataaggta
3751 gaaatgcaga atcttcaaga taaattcgaa actatgcaaa ttagaaataa
3801 atcagaaata acagaaatac caacaacctc attagctatg agagcaaatg
3851 aatcaaatta tataaaaaca tcaattaata aaactgcagg atgttatgta
3901 gaaacaaaaa tttcatttaa caatgaaaac agaatcataa cagccctaat
3951 agattcagga tcaacacata atataatatg tccaacattg ataccagcat
4001 catggattaa taatacacat agagaaatta taatgtttgc tgtagacaat
4051 agcaaatata atctgaatca agaattaata gatgatataa aattacaatt
4101 ccaagaagtt gatgaaactt ttggaataaa atataaatta ggacaaacct
4151 atgtagcacc taagccaaca aaaacattta taataggaca cagattcctt
4201 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca
4251 aaaaactacg ggaatatacc caacagccag acacgaactt aaatcagagt
4301 ttgcgcgaaa gcatggtgga cgcccgccat tattttcaaa cattcctgaa
4351 acctataaca aaattcctca tttgcattca tatcagcctc aaccaatatt
4401 aggatataag aatgaaatag gaaatcaaag tttaatcact atggtgaaag
4451 aattagaagc acttggattc ataggagatg acattactaa aaacagaaca
4501 acgtgggtat gtgacttcaa aatcataaac ccagatatca atataacttg
4551 tgcaacaatt ccatacacgc cagcagataa agaagttttt gaaaaacaaa
4601 ttaaggagtt actagataat aagttaatca agaaagctga tccaacatgt
4651 agacatagaa cagcagcatt catagtaaga aatcattctg aagaagtagc
4701 tcagaaacct cgaatagttt ataactataa acgtttaaat gataatatgc
4751 atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata
4801 cagaaagcta atatattttc taagtttgat ctaaaagcag gatttcacca
4851 tatgaaatta aaagatgaat tcaaagattg gactactttt acatgctcag
4901 aaggattata tacttggaac gtctgtccat ttggtatagc taacgctcct
4951 tgtgcatttc aaagatttat gcaggaatcc tttggagatt taaagtttgc
5001 attattatat atagatgaca tacttattgc atctaataac gaaaaagagc
5051 atatagaaca tcttaagatt ttctttaata gagtaaaaga agtaggatgt
5101 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct
5151 tggagtagaa attaaagaag gaaagattag tcttcagccg catatagttg
5201 ataagatcaa aaaatttgat aaaaataaac tcaacaccct aaagggacta
5251 caagcatatc tagggttact caattatgcc agaggataca tcaaagacct
5301 atcaaagcta gtaggaccac tttataaaaa gacaggaaaa aatgggcaaa
5351 gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag
5401 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat
5451 tatagagaca gatgcgtcag aagaaggctg gggagcagtc ttagtctgta
5501 agccagataa atatagtggc aaggacactg agaaaatagc aggatacgca
5551 tcaggaaact ttggagagaa gaaaacctgg actagtttag attatgaaat
5601 agaagctata aatgaagccc taaacaagtt ccagatatac ttagacaaag
5651 attttacaat cagaactgat tgtgaagcaa tagtgaaagg gataaaaaca
5701 gaagactata aaaagagatc aaaaacaagg tggatcaagt taagagataa
5751 tctcttaaag gatggataca agcctacctt tgagcatatc aagggaaaca
5801 aaaacttttt accaaacttc ttatcccgtg agggagattt tattttaaaa
5851 tgtcttcaaa accccgattc tacggaatca cattctatag attcgccaga
5901 atcaattcca ctatatatcg attcgaaaga atcacattct atagagtctg
5951 atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg
6001 ctaaaggaaa agagtgccta actaagatcg gaggcatcac catgaatata
6051 gagtacccgt actcaatcca cataatagac aagaacaagg ttccgatcta
6101 cgatcaagga aatctcttcc acactgagaa gtcctcaaga ctttcacatg
6151 tgtccagagg tttgctggat catctcttta ctttttcgtc tgataatact
6201 gagcgagtta ggaagctcca catattagcc gattatcttt acctattaga
6251 aagtgagaga gagtcatata aaaatgagtg gattagcttg aaggatcaag
6301 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc
6351 aacaaagaaa taatagaggg actgagagag ccagttaaaa agccaatata
6401 cacaacccag gataaagaga ggctccgtgt tttcttttgc gaagaaagaa
6451 gcatggaata tatatattat catataaaaa ggctagctca gcagagctat
6501 tattcccacc taaataaatt acagaaggat tgtgaaccct ttagaggggt
6551 ctacatgtct ttcttaacta atgttaagtt cctagtatta tgtgaagctg
6601 gatactggac tgtaccagat atagaaacta atactacaga atctatatta
6651 agtctatccc agaagaaagg agaagatctt ctacaaaagg gagtagtaat
6701 atttaatgag cttgaaggag gatatcaact ctctccaagg tttattggag
6751 acctttatgc tcatggtttt attaaacaaa taaacttcac aaccaaggtt
6801 cctgaagggc taccgccaat catagcggaa aaacttcaag actataagtt
6851 ccctggatca aataccgtct taatagaacg agagattcct cgctggaact
6901 tcaatgaaat gaaaagagaa acacagatga ggaccaactt atatatcttc
6951 aagaattatc gctgtttcta tggctattca ccattaaggc catacgaacc
7001 tataactcct gaagaatttg ggtttgatta ctacagttgg gaaaatatgg
7051 ttgatgaaga cgaaggagaa gttgtataca tctccaagta tactaagatt
7101 atcaaagtca ctaaagagca tgcatgggct tggccagaac atgatggaga
7151 cacaatgtcc tgcaccacat caatagaaga tgaatggatc catcgtatgg
7201 acaatgctta aagaagcttt atcaaaagca actttaagta cgaatcaata
7251 aagaaggacc agaagatata aagctggaac atcttcacat gctaccacat
7301 ggctagcatc tttactttag catctctatt attgtaagag tgtataatga
7351 ccagtgtgcc cctggactcc agtatataag gagcaccaga gtagtgtaat
7401 agatcatcga tcaagcaagc gagagctcaa acttctaaga gagcaagaga
7451 ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct
7501 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa
7551 tatgtttgta cttatgattg tatttctcaa aacctatccg ctgcatgaat
7601 aaagctctta tatttatcct acacccttgt gataaaacat gaagtcatac
7651 tcgttctaag attaagtgtt ctaaaaatac ttcgaagcat tgaaaagggg
7701 gctaaagggg gaaaaagtac cgtcagccgt gttatggcaa gggaagaagt
7751 accatgaata ccctatagat gttagaagga agatgagaac taagtatctt
7801 atgaacaatg ggtagctgat ttctgattat cattaacaag tatcgttata
7851 atccataagc tttgaaagat ctgctagtgt ggataccaaa aggctgtcgt
7901 ggttcgccca gtcgacggat gaggtcataa acgaagcact agtaggtaac
7951 taagaggctt agggatgagc aacgagaaaa gttagggggg tgcctagaaa