Sequence of DPV Sugarcane bacilliform MO virus
Sugarcane bacilliform Mor virus ORF1, ORF2, and ORF3 genes, complete cds.
ACC No: M89923
Dated: 2005-12-15 | Length: 7568 | CRC: -717164185
ID M89923 standard; genomic DNA; VRL; 7568 BP.
XX
AC M89923;
XX
SV M89923.1
XX
DT 22-MAY-1992 (Rel. 31, Created)
DT 15-DEC-2005 (Rel. 86, Last updated, Version 4)
XX
DE Sugarcane bacilliform Mor virus ORF1, ORF2, and ORF3 genes, complete cds.
XX
KW .
XX
OS Sugarcane bacilliform Mor virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7568
RX PUBMED; 8423447.
RA Bouhida M., Lockhart B.E., Olszewski N.E.;
RT "An analysis of the complete sequence of a sugarcane bacilliform virus
RT genome infectious to banana and rice";
RL J. Gen. Virol. 74(Pt 1):15-22(1993).
XX
RN [2]
RP 1-7568
RA Bouhida M., Lockhart B.E., Olszewski N.E.;
RT ;
RL Submitted (12-JUN-1993) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Biology, University of Minnesota, St. Paul, MN 55108,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7568
FT /db_xref="taxon:362399"
FT /mol_type="genomic DNA"
FT /organism="Sugarcane bacilliform Mor virus"
FT primer_bind 1. .17
FT /note="methionine tRNA binds and primes minus strand
FT synthesis"
FT CDS 611. .1168
FT /codon_start=1
FT /db_xref="InterPro:IPR010746"
FT /db_xref="UniProtKB/TrEMBL:Q86996"
FT /product="ORF1"
FT /protein_id="AAA47452.1"
FT /translation="MKSEAEWETQFTAWKNSHIFENANQELILGTKISNSDLNHNLRTT
FT CYRVDLGYKVLLTSQQKAFEHRKELFSEGRKHLADQSRKLQLVADKAEQSLIIQKEQRA
FT RLKKVEDGLSTLSREIHDLRVEYLKRRPLSKEDVAELVLTISEQPKLIEKQTELLLEQV
FT KKLVETTRREVETVHHMVKRIS"
FT CDS 1168. .1539
FT /codon_start=1
FT /db_xref="UniProtKB/TrEMBL:Q86997"
FT /product="ORF2"
FT /protein_id="AAA47453.1"
FT /translation="MSINEPAYAKALEKTKNILGESGEGFVAGNASITTLTKQNNLTIE
FT LLLTLHGKIKSLEDKIQDLKEDLTKKADKPSSSGLDKQLDDLAKRIEGLRTGAAPVKVV
FT ERGKLKVHANPFELLRKIQ"
FT CDS 1536. .7151
FT /codon_start=1
FT /db_xref="GOA:Q86998"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001969"
FT /db_xref="InterPro:IPR001995"
FT /db_xref="InterPro:IPR009007"
FT /db_xref="InterPro:IPR010666"
FT /db_xref="UniProtKB/TrEMBL:Q86998"
FT /function="'viral coat; aspartic protease; reverse
FT transriptase; ribonuclease H'"
FT /product="ORF3"
FT /protein_id="AAA47454.1"
FT /translation="MTQRVRGTGSSTITEDGALLDHQIRDYRRAQHAKHEAQRIAGQAL
FT AFLRVTSDDPREKTLEMLMQPDVELTRSMKKRARAFPAEVLYGPRSDDIHHKVFQGSSS
FT QDILLIDDNQLDMTFIKEETFEQLEQAGLRYIHPGILAVRIQPLHPDWSGKLVFIVFRD
FT IRDNPPRVLGAMEIDLSKGPQMVYVINSFMTTIKDFFHGIQLTVKVKGYEGWQGEANLH
FT IERLITARLSNTTNVYFKYKVEGVASFIKTKGIKAIEATKKSVKGIRGGEWNILPSKLE
FT VVMQPTKVQTTENYDGTTSFRFTNYEGASSSKPVEHNSDDEAYMALFEEEEEEDDITFL
FT NRILSKYSTQQKVVGEEEFSPEEDQIISDFLGKTEEAYPAEIEEEYPALRRLEQLMKTK
FT VVVQEIEEPSQPVEAKMSTSTGSSAMIPANMDMDGNMPGYAPAQEARGWDSGETSRRNY
FT GGHSRKWKDESQFFNLPSAMATSGAMLVLTMGNYAKEFDRWQSINTNLLASQTFENAED
FT KITRIENLLGETEKLMFQTWRMAFPTAFEAMKTQATGTNGTQNVFSQMKRILLGEVPEQ
FT GTTNTQDAAYKRIKSLVCQEMTYPAIMRYLVGYRNLAARSGRAWVNNELTDEFFTKLPG
FT KLGDRVKEAFKKKYPGVERHVPAATRFTYDYLEEICTENNFQKQLRSLNFCKGFPVVNP
FT VGTRKYGKKYGTRKARSYRGKPHKSHVRIEKKKYLQQREKKCRCYVCGSPDHLMKDCKS
FT PMKRQERVNLANELDIPDGYDLVSVGYDESDIDEIYSVSENEECQAHLGLNEDEQLPKV
FT PQTFEEWEEYYKDEFIMMADIEESENSDEEKGPFLVGPKGGFRHQMEVSYKQYKCEHDW
FT DFTRTRVKPCKRCLKTVTKGQYIYCRTCKITVCHECSEFCYNIKIEGAEAVKPPEKKSN
FT YELLAKQLLIENSKLKMEKEILIEELNKEIKAHQETKKGKELYIEEASTEVENEIETWK
FT SRAELFEALYNEEVKKNKASTSSVTEGMYQVQIDHLRKELREVEATLEVNKVEESEEEA
FT EEVMMASAVKDEMYRFPVIIEVPEVGKVQLTALLDTGATRSCINQVFIEEKFLQPTKFK
FT VKIHGVNSVTKLDRQVKDGAKLWAGENWFRLPITYVGPMYMGEKTQMLIGCNFMQSLAG
FT GVRLEGRTVTFYKYIASIKANEYLQAEAEEILVATSEQEFINRSFMSKNKRLLEEMKEQ
FT GYMGEDTLAHWNKNQIKCKIELRNPDLIIKDKPQTLLNIQKKEAMRKHIDALLERKVIR
FT PSKSPHRTNAFIVESGTSIDPKTGKEIRGKPRLVFNYKRLNDNTWPDQYSLPGINALLK
FT NVARAKIFSKFDLKSGFHQVAMDEESIPLTAFSAYNELYEWLVMPFGLKNAPAIFQRKM
FT DQCFRGTEGFIAVYIDDILVFSEDEEQHAEHLWKMLQICKRNGLILSPSKYKIGVKKVD
FT FLGSTIGDNQLAVQEHIIKKIAEFDDEKLKTKEGLKSWLATLNYARNHIKDMGKLLGPL
FT YPKTSEKGERRLNSEDWKLINRIKTMVRTLPNLTIPPEDAYIIIETDACATGWGAVCKW
FT KKNKADPRNTEQICRYASGKFDKPKGTCDAEIYGVMNGLEKMRLFYLDKREITVRTDSS
FT AIERFYNKSAEHKPSEIRWIRFMDYITGAGPEIVIEHIKGKSNGLADILSRLKAKLAQN
FT EPTEEMILLTQAIREVIPYPDHPYTEQLREWGNKILDPFPTFKKDMFERTEQAFMLTEE
FT PVLLCACRKPAIQLVSRTSANPGRKFFKCAMNKCHCWYWADLIEEHIQDRIDEFLKNLE
FT VLKTGGVQTMEEELMKEVTKLKIEEQEFEEYQATPRAMSPVAAEDVLDLQDVSNDD"
XX
SQ Sequence 7568 BP; 2602 A; 1468 C; 1809 G; 1689 T; 0 other;
m89923 Length: 7568 15-DEC-2005 Type: N Check: 9298 ..
1 tggtatcaga gcgaggtatg atttctgtat ccgctatgtt ctaaatttct
51 tagataaggg gccaagggct ctgctgatga gtttaaggac aactacttgt
101 gcaagttaca tagcatgata cgtcgaaagg ctgaaaatat ccaaaatact
151 gtctattgtt tggaaaacta ggttgttcta ggggagaacg ttaatgaggg
201 gtaagcttag ttcattctga aaatcaaggt ctgtgattgt agttgagctc
251 agtaattaag tgctgaagga agtaagatct aggtaggaca aaagtacccg
301 tcaaggcagg aggccgctaa ggggaaaaga gccagacgat caaagctttt
351 tcagcacggt tgttgagttt agctatcaag aaatagcctt gagactaaga
401 ttcatcacta agaactgcct actcaagcct ccctgaatcc gcctattagt
451 acaaacgaga caacagtata aggagaaact atatgcctgt aagacttaag
501 tgcaaaagta acctctggaa ctgggtagaa gtctagagac tctgaaagca
551 tcccaaggta tcccttatct ccattagaac actgtgatac agttcttgta
601 tctaccttgc atgaaatctg aagccgagtg ggaaacacag tttaccgctt
651 ggaagaattc ccatatattc gaaaacgcta accaagagct tattcttgga
701 acaaagatct ctaattctga tttaaatcat aatctgcgta ctacttgcta
751 tagagtagat cttggataca aagttctgct aacctcgcag cagaaggcgt
801 tcgagcacag gaaggagcta ttctctgaag ggagaaagca ccttgctgat
851 caaagcagga agctacaact cgtagctgac aaagcggaac aatcgctgat
901 cattcagaag gaacagcgtg cacgtctgaa gaaggttgaa gacggcctat
951 cgaccctcag tagggagatc cacgaccttc gtgtggaata cctgaagcgg
1001 aggcctttat caaaagaaga cgttgctgaa cttgtgctga caatctcaga
1051 gcagcccaag cttatcgaga agcagaccga gttgctcctc gagcaggtca
1101 agaagctggt ggagaccaca cgtagagaag ttgagacggt tcaccacatg
1151 gtgaaacgta tcagctgatg agtatcaacg aaccagcata cgcaaaggct
1201 ctcgagaaga ccaagaatat ccttggagag tcaggagaag gcttcgttgc
1251 aggaaacgca agcatcacaa cgcttaccaa gcagaataac ttaaccattg
1301 agttactgct taccctgcac ggaaagatca agtctttgga ggacaaaatc
1351 caagacttga aggaagacct taccaagaag gcggacaagc ccagctcatc
1401 cgggctagac aagcaactcg acgacctcgc caagaggatc gaagggttga
1451 ggacaggagc agcacctgtc aaggtagttg aaagggggaa gctaaaagtt
1501 cacgctaatc cctttgaact cctgaggaag atccaatgac gcaaagagtc
1551 agaggtaccg gctccagtac catcacagaa gatggagcac tcttggatca
1601 ccagatccga gattacagaa gagcccagca tgcaaaacat gaggctcaga
1651 gaatcgcagg tcaagcactt gcttttctac gggttacctc agacgacccg
1701 agagagaaga ccctggagat gctcatgcag cctgatgtgg agctaaccag
1751 gagcatgaag aagagagcca gagctttccc agcagaagtt ctgtatggcc
1801 caagaagtga tgatattcat cacaaagtct ttcaagggag ctctagccag
1851 gatatcctcc tgattgatga caatcagctt gatatgacct ttatcaagga
1901 ggaaacattc gagcaattgg agcaggcagg actccggtat attcatcccg
1951 gaatactagc tgttagaata cagcctctgc atccagactg gtcaggaaaa
2001 ctggttttca tagttttccg tgacatcaga gataacccac caagagtact
2051 tggagctatg gaaattgatc tgagcaaagg accacaaatg gtctatgtga
2101 tcaatagctt catgacaacg ataaaggatt tctttcatgg aatccagctt
2151 actgtcaagg tgaagggtta tgaaggttgg caaggagagg ccaacttaca
2201 cattgaaagg ttgataactg caagattgtc aaatacaacc aatgtgtatt
2251 tcaagtataa ggttgaagga gtggcgtctt ttatcaagac caaaggtata
2301 aaagctattg aagccactaa aaagagtgtg aagggcatca gaggaggaga
2351 atggaacatt ctcccatcaa agctagaggt agtcatgcaa cctaccaagg
2401 tgcagactac agaaaattat gatggcacaa catccttcag attcacaaat
2451 tatgaaggtg ccagttcttc aaagccagta gagcacaact cagatgatga
2501 ggcatatatg gcgctctttg aagaagaaga ggaagaggat gacatcactt
2551 tcctcaaccg aatcttatca aagtactcta cgcagcaaaa ggtagtggga
2601 gaagaagaat tttccccaga agaagaccag attatttctg attttcttgg
2651 aaaaactgaa gaagcctacc ctgctgaaat tgaagaagag tacccagcgc
2701 taagaagact tgaacaactc atgaaaacaa aagttgttgt tcaagagatt
2751 gaagagccat cccagccagt tgaagctaag atgagtacaa gcactggatc
2801 atctgctatg atccctgcaa acatggacat ggatggaaac atgcctggct
2851 atgcaccagc acaagaagcc agaggatggg attcaggaga gactagcaga
2901 agaaactatg gtggacattc tagaaaatgg aaggatgaaa gtcagttctt
2951 taatcttcca tctgccatgg caacatctgg agcgatgcta gttctcacaa
3001 tgggaaatta tgcaaaggag tttgatagat ggcagtctat caacacaaat
3051 ttattagcat cccagacatt tgagaatgca gaagacaaga tcaccaggat
3101 tgagaatctt cttggtgaaa cagaaaagct aatgttccag acctggagaa
3151 tggccttccc aacggccttt gaagcaatga aaactcaagc cacaggaaca
3201 aatggaacac agaatgtctt ctcacaaatg aagaggatat tgcttggaga
3251 ggttcctgaa caaggaacaa caaacactca agatgcagcc tacaagagga
3301 taaaatctct tgtctgccaa gaaatgacat atccagcaat catgagatat
3351 ctagttggat atagaaattt ggctgccaga tcaggaagag cttgggttaa
3401 caatgagtta actgatgaat tcttcaccaa gctaccagga aaattaggag
3451 accgggtaaa agaagctttc aagaagaagt atcccggagt tgaaaggcat
3501 gtcccagcgg ccacaagatt tacatatgat tacctggaag aaatttgtac
3551 agaaaacaac ttccagaagc aactcagaag cctgaatttc tgcaaaggct
3601 tcccagtggt caatcctgtt ggaacaagga aatatggaaa gaaatatggg
3651 acaagaaaag caagatctta cagaggcaag ccacacaagt ctcatgtaag
3701 aatagagaag aagaaatatc tgcagcaaag agagaagaaa tgcagatgct
3751 atgtctgtgg ttcaccagat cacctgatga aggactgcaa aagtcctatg
3801 aagagacaag aaagggtgaa cttggcaaat gaattggata tcccagatgg
3851 ctatgaccta gtctctgttg gatatgatga atcagacatc gatgaaatct
3901 attcagtatc agaaaatgaa gaatgtcagg cacatctagg cctgaatgaa
3951 gatgaacagc taccaaaggt tcctcaaacc tttgaagaat gggaagagta
4001 ctacaaagat gagttcatca tgatggctga tattgaagaa agtgagaatt
4051 cagatgaaga aaagggtccg ttccttgtag gaccaaaagg aggtttcagg
4101 caccaaatgg aagtctcata caagcaatac aagtgtgagc atgattggga
4151 ttttacaaga acaagggtaa aaccttgcaa aagatgcctg aagacagtga
4201 caaaggggca gtacatatac tgcaggacat gcaagatcac agtttgtcat
4251 gaatgctcag aattctgcta caatatcaaa atcgagggag cagaagcagt
4301 caagccccca gaaaagaagt caaactatga gctgctggcc aaacagttgc
4351 tgattgaaaa tagcaagctc aaaatggaga aagagattct tattgaagaa
4401 ctcaacaagg aaataaaagc tcatcaagaa acaaagaaag gaaaagagct
4451 ttacattgaa gaagcttcca cggaggtgga aaatgaaatt gaaacatgga
4501 agagtagggc agaattgttt gaagccctat acaatgaaga agtaaagaag
4551 aataaagcca gtacatccag tgtgacagaa gggatgtacc aagtccagat
4601 cgaccaccta agaaaagaac tcagggaagt tgaggcaacc cttgaggtaa
4651 acaaggtcga agaatctgaa gaagaagctg aagaagtgat gatggcttca
4701 gcagttaaag atgagatgta cagattccca gtgatcatag aagttccaga
4751 agttggaaag gtacaactca cagctctctt ggatacaggt gcaacaaggt
4801 cctgtatcaa ccaagtattc attgaagaga agtttctcca acccacgaag
4851 ttcaaagtca agatacatgg ggtaaactca gtaacaaagc ttgaccgaca
4901 agtcaaagat ggtgcaaagc tttgggcagg agaaaattgg ttcagactcc
4951 cgatcacata tgttggacca atgtacatgg gagaaaagac gcagatgctc
5001 ataggatgca attttatgca atccttagca ggaggagttc ggctggaagg
5051 aagaacagtg accttctaca aatacattgc cagtattaag gcaaatgagt
5101 acttgcaagc cgaagcagag gaaattcttg ttgctacctc agaacaagaa
5151 tttatcaaca gaagtttcat gagcaagaac aagaggcttc ttgaggagat
5201 gaaggagcaa ggatatatgg gtgaagatac cttggctcac tggaacaaga
5251 atcagatcaa gtgcaagatt gaattgagaa acccagatct gattattaaa
5301 gacaagcctc agacactatt gaacattcag aagaaagaag caatgaggaa
5351 gcatattgat gctctcctag aaagaaaagt catcaggcct tcgaagagtc
5401 ctcacaggac caatgcattc attgtggaat cgggtacatc aattgacccg
5451 aagactggaa aggaaatcag aggaaaacca agactggttt tcaattacaa
5501 gaggctaaat gacaacacat ggccggatca atattcattg cccggaatca
5551 atgctctact aaaaaatgtt gcaagagcaa agatcttctc aaagtttgat
5601 ttgaagagcg ggtttcatca agtcgccatg gatgaagaaa gtattccatt
5651 aacagcattt tcagcataca atgagctgta tgaatggctg gtcatgccat
5701 ttggattaaa gaatgcacca gcaatcttcc agagaaaaat ggaccagtgt
5751 ttcagaggaa cagaagggtt catagctgtg tatattgatg acatattggt
5801 tttctcggag gacgaagaac agcatgctga acatctgtgg aagatgcttc
5851 aaatctgcaa aaggaatgga ctaatcttga gtccgtcaaa gtacaagata
5901 ggagttaaga aggtggattt cttgggaagc acaattggtg acaaccaatt
5951 agcagtccaa gaacatatta ttaagaagat tgcagaattt gatgacgaga
6001 agttgaagac aaaagaaggt cttaaatcct ggctagcaac actgaactat
6051 gccagaaacc acatcaaaga tatgggcaag cttcttggcc cattatatcc
6101 aaagacctca gagaaaggtg agcgaaggct caattcagaa gattggaagc
6151 tgatcaatag gatcaagaca atggtgagaa cgcttccaaa tctcactatt
6201 ccaccagaag atgcatacat tatcattgaa acagatgcat gtgcaactgg
6251 atggggagca gtatgcaagt ggaagaaaaa caaggcagac ccaagaaata
6301 cagagcaaat ctgtaggtat gccagtggaa aatttgataa gccaaaagga
6351 acctgtgatg cagaaatcta tggggttatg aatggcttag aaaagatgag
6401 attgttctac ttggacaaaa gagagatcac agtcagaact gacagtagtg
6451 caatcgaaag gttctacaac aagagtgctg aacacaagcc ttctgagatc
6501 agatggatca ggttcatgga ctacatcact ggtgcaggac cagagatagt
6551 cattgaacac ataaaaggga agagcaatgg tttagctgac atcttgtcca
6601 ggctcaaagc caaattagct cagaatgaac caacggaaga gatgatcctg
6651 cttacacaag ccataaggga agtaattcct tatccagatc atccatacac
6701 tgagcaactc agagaatggg gaaacaaaat tctggatcca ttccccacat
6751 tcaagaagga catgttcgaa agaacagagc aagcttttat gctaacagag
6801 gaaccagttc tactctgtgc atgcaggaag cctgcaattc agttagtgtc
6851 cagaacatct gccaacccag gaaggaaatt cttcaagtgc gcaatgaaca
6901 aatgccattg ctggtactgg gcagatctca ttgaagaaca cattcaagac
6951 agaattgatg aatttctcaa gaatcttgaa gttctgaaga ccggtggcgt
7001 gcaaacaatg gaggaggaac ttatgaagga agtcaccaag ctgaagatag
7051 aagagcagga gttcgaggaa taccaggcca caccaagggc tatgtcgcca
7101 gtagccgcag aagatgtgct agatctccaa gacgtaagca atgacgattg
7151 aggaggcatt gacgtcaggg atgaccgcag cggagagtac tgggcccatt
7201 cagtggatgc tccactgagt tgtattattg tgtgcttttc ggacaagtgt
7251 gctgtccact ttcttttggc acctgtgcca ctttattcct tgtctgccac
7301 gatgcctttg cttagcttgt aagcaaggat cgcagtgcgt gtgtgacacc
7351 accccccttc cgacgctctg cctatataag gcaccgtctg taagctctta
7401 cgatcatcgg tagttcacca catgatcatt tgagcaagtt tgcttgaata
7451 aaagaactat cattccgcat acctgatcct atagtcctag cttgagaaca
7501 agagcgaagt ctatagttga gatcctaaga gaaactcgag gtttttcggg
7551 tttcctgggc gcgttccc