Sequence of DPV Cauliflower mosaic virus
Cauliflower mosaic virus isolate BBC, complete genome.
ACC No: M90542
Dated: 2010-02-05 | Length: 8032 | CRC: 1381152881
ID M90542; SV 1; circular; genomic DNA; STD; VRL; 8032 BP.
XX
AC M90542;
XX
DT 16-JUN-1992 (Rel. 32, Created)
DT 05-FEB-2010 (Rel. 103, Last updated, Version 7)
XX
DE Cauliflower mosaic virus isolate BBC, complete genome.
XX
KW aphid transmission protein; capsid protein; DNA-binding protein;
KW inclusion body matrix protein; movement protein; reverse transcriptase.
XX
OS Cauliflower mosaic virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Caulimovirus.
XX
RN [2]
RP 1-8032
RA Melcher U.;
RT ;
RL Submitted (15-JUN-1992) to the EMBL/GenBank/DDBJ databases.
RL Department of Biochemistry and Molecular Biology, Oklahoma State
RL University, Stillwater, OK 74078-0454, USA
XX
RN [3]
RP 1-8032
RX DOI; 10.1016/0378-1119(93)90133-N.
RX PUBMED; 8428667.
RA Chenault K.D., Melcher U.;
RT "The complete nucleotide sequence of cauliflower mosaic virus isolate BBC";
RL Gene 123(2):255-257(1993).
XX
DR EPD; EP07015; CAMV_35MJ.
XX
CC On Feb 23, 1995 this sequence version replaced gi:293180.
CC Original source text: Cauliflower mosaic virus (individual_isolate
CC BBC) DNA.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8032
FT /organism="Cauliflower mosaic virus"
FT /isolate="BBC"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:10641"
FT CDS 364. .1347
FT /codon_start=1
FT /product="movement protein"
FT /db_xref="GOA:Q02968"
FT /db_xref="InterPro:IPR001022"
FT /db_xref="UniProtKB/Swiss-Prot:Q02968"
FT /protein_id="AAA62371.1"
FT /translation="MDLYPEENTQSEQSQNSENNMQIFKSENSDGFSSDLMISNDQLKN
FT ISKTQLTLEKEKIFKMPNVLSQVMKRAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI
FT TREEINKRLSSLKPEVRKTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDC
FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYM
FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVHESDFCTIQNDECNWAIDIAQNKALLG
FT AKTKSQIGNNLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE"
FT CDS 1349. .1828
FT /codon_start=1
FT /product="aphid transmission protein"
FT /db_xref="GOA:Q02966"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="UniProtKB/Swiss-Prot:Q02966"
FT /protein_id="AAA62372.1"
FT /translation="MRITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH
FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQLKE
FT IKSLLEAQNTRIKNLEKAIQSLDNKIEPEPLTKKEVKELKESINSIKEGLKNIIG"
FT CDS 1830. .2219
FT /codon_start=1
FT /product="DNA-binding protein"
FT /db_xref="GOA:Q02967"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProtKB/Swiss-Prot:Q02967"
FT /protein_id="AAA62373.1"
FT /translation="MANLNQIQKEVSEILSDQKSMKSDIKAILELLGSQNPTKESLEAV
FT AAKIVNDLTKLINDCPCNKEILEALGNQPKEQLIEQPKEKGKGLNLGKYSYPNYGVGNE
FT ELGSSGNPKALTWPFKAPAGWPNQF"
FT CDS 2201. .3667
FT /codon_start=1
FT /product="capsid protein"
FT /db_xref="GOA:Q02951"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProtKB/Swiss-Prot:Q02951"
FT /protein_id="AAA62374.1"
FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQIID
FT LTSLPSDNLQVEQVMTTTDDSISEESEFLLAIGETSEDESDSGEEPEFEQVRMDRTGGT
FT EIPKKEDGAEPSRYNERKRKTTEDRYFPTQPKTIPGQKQTSMGILNIDCQTNRRTLIDD
FT WAAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTTGDIIEQVIDAMY
FT TMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFPG
FT YINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICALSKKQKKLKKF
FT NKKCCSIGEASVEYGCKKTSKKKYHNKRYKKKYKVYKPYKKKKKFRSGKYFKPKEKKGS
FT KQKYCPKGKKDCRCWISNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIEEPYEGVQE
FT VFILEYKEEEEETSTEESDGSSTSEDSDSD"
FT CDS 3630. .5669
FT /codon_start=1
FT /product="reverse transcriptase"
FT /db_xref="GOA:Q02964"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="UniProtKB/Swiss-Prot:Q02964"
FT /protein_id="AAA62375.1"
FT /translation="MDHLLLKTQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVD
FT TGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAREIFKIPTVY
FT QQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMK
FT KRSKTQQPEPVNISTNKIENPLKEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSE
FT NPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP
FT HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFD
FT CKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCC
FT VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHK
FT PQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWT
FT KEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELIC
FT RYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG
FT DSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS"
FT CDS 5773. .7335
FT /codon_start=1
FT /product="inclusion body matrix protein"
FT /db_xref="GOA:Q02954"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="InterPro:IPR009027"
FT /db_xref="InterPro:IPR011320"
FT /db_xref="UniProtKB/Swiss-Prot:Q02954"
FT /protein_id="AAA62376.1"
FT /translation="MENIEKLLMQEKILMLELDLVRAKISLARANGSSQQGDLSLHRET
FT PVKEEAVHSALATFTPTQVKAIPEQTAPGKESTNPLMASILPKDMNPVQTGIRLAVPGD
FT FLRPHQGIPIPQKSELSSTVVPLRDESGIQHPHINYYVVYNGPHAGIYDDWGCTKAATN
FT GVPGVAHKKFATITEARAAADAYTTSQQTDRLNFIPKGEAQLKPKSFREALTSPPKQKA
FT HWLTLGTKRPSSDPAPKEISFAPEITMDDFLYLYDLGRKFDGEGDDTMFTTDNEKISLF
FT NFRKNADPQMVREAYAAGLIKTIYPSNNLQEIKYLPKKVKDAVKRFRTNCIKNTEKDIF
FT LKIRSTIPVWTIQGLLHKPRQVIEIGVSKKVVPTESKAMESKIQIEDLTELAVKTGEQF
FT IQSLLRLNDKKKIFVNMVEDDTLVYSKNIKDTVSEDQRAIETFQQRVISGNLLGFHCPA
FT ICHFIERTVEKEGGSYKVHHCDKGKAIVQDASADSGPKDGPPPTRSIVEKEDVPTTSSK
FT QVD"
XX
SQ Sequence 8032 BP; 2942 A; 1645 C; 1566 G; 1879 T; 0 other;
m90542 Length: 8032 05-FEB-2010 Type: N Check: 8507 ..
1 ggtatcagag ccatgaatcg gtttaaagac caaattcaag agggtaaaac
51 ctcaccaata aacaaaagag ttcttaactc taatgataaa agatctttca
101 agatcaacaa tagttccctc acaccggtga ccgacaggtt tacgaccgta
151 aggtttcaga acaacatcga aagcgtttac gccaacttcg actctcgact
201 aaagtcgtcg tacgatggta gatctaaaaa gatcaagaat ctaagcctta
251 aaaatcttag atgttacgaa gccttcctca ggaagtacct tctggaacaa
301 taaatctctc tgagaatagt actctattga gtatccacag aaaaaataat
351 cttctgtgtt gagatggatt tgtatccaga agaaaacacc caaagcgagc
401 aatcgcagaa ttctgaaaat aatatgcaaa tatttaagtc agaaaattcg
451 gatggattct cctccgatct aatgatctca aacgatcaat taaaaaatat
501 ctcaaaaacc caattaactt tggaaaaaga aaagatattt aaaatgccta
551 acgttttgtc tcaagttatg aaaagagcgt ttagcaggaa aaacgagatt
601 ctttactgcg tctcgacaaa agagttatca gtggacattc acgatgccac
651 aggtaaggta tatcttccct taatcactag agaggagata aataaaagac
701 tttcaagctt aaaacctgaa gtcagaaaga ccatgtccat ggttcatctt
751 ggagcggtca aaatattgct taaagctcaa tttcgaaatg ggattgatac
801 cccaatcaaa attgctttaa tcgatgatag aattaattct agaagagatt
851 gccttctcgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt
901 actgtatacc ccaagtttgg aataagcctt aatacccaaa gacttaacca
951 aaccctaagc cttattcatg attttgaaaa taaaaatctt atgaataaag
1001 gtgataaagt tatgaccata acctatatgg taggatatgc attaactaat
1051 agtcatcata gcatagatta tcaatcgaat gctacaattg aactagaaga
1101 cgtatttcaa gaaattggaa atgtccacga gtctgatttt tgtacaatac
1151 aaaatgacga atgcaattgg gccattgata tagcccaaaa caaagcctta
1201 ttaggagcta aaaccaaatc ccaaattggt aataatcttc aaataggaaa
1251 cagtgcttca tcctctaata ctgaaaatga attagctagg gtaagccaga
1301 acatagatct tttaaagaat aaattaaaag aaatctgtgg agaataaaat
1351 gaggattacg ggtcaaccgc atgtttataa aaaagatact attattagac
1401 taaaaccatt gtctcttaat agtaataata gaagttatgt ttttagttcc
1451 tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga
1501 gattgtagga agaagcttac tcggaatatg gaagatcaat tcatacttcg
1551 gcttaagcaa agacccttcg gagtccaaat caaaaaaccc gtcagttttt
1601 aatactgcaa aaaccatttt taagagtggg ggggttgatt actcgagcca
1651 actaaaagaa ataaaatctc ttttagaagc tcaaaatact agaattaaaa
1701 atctagaaaa agcaattcaa tccttagata ataagattga accagagccc
1751 ttaactaaaa aagaagttaa agagctaaaa gaatcgatta actcgatcaa
1801 agaaggatta aagaatatta ttggctgaaa tggctaatct taatcaaatc
1851 caaaaagaag tctctgaaat cctcagtgac caaaaatcca tgaaatcgga
1901 tataaaagct atcttagaat tactaggatc ccaaaatcct actaaagaaa
1951 gcttagaagc cgttgcagcg aaaatcgtta atgacttaac caagctcatc
2001 aatgattgtc cttgtaacaa agagatatta gaagccttag gtaatcaacc
2051 taaagagcaa ctaatagaac aacctaaaga aaaaggcaaa ggccttaatc
2101 taggaaaata ttcttaccct aattacggtg taggaaatga agaattagga
2151 tcctctggaa accctaaagc tttaacttgg cccttcaaag ctccagcagg
2201 atggccgaat caattttaga caggaccatt aaccggttct ggtataatct
2251 gggagaagat tgtctctcgg aaagtcaatt tgaccttatg ataaggttaa
2301 tggaagagtc ccttgacggg gaccaaatta ttgatctaac ctctctacct
2351 agtgataatt tgcaggtcga acaggttatg acaactaccg acgactcgat
2401 ctcggaagaa tcagaattcc ttctagcaat aggagaaaca tctgaagacg
2451 aaagcgattc aggagaagaa cctgaattcg aacaagttcg aatggatcga
2501 acaggaggaa cggagattcc caaaaaagaa gatggtgcag aaccatctag
2551 atataatgag agaaagagaa agaccacgga ggaccggtac tttccaactc
2601 aaccaaagac cattccagga caaaaacaaa cgtctatggg aatactcaac
2651 attgactgcc aaaccaatcg aagaacctta atcgatgact gggcagcaga
2701 aatcggattg atagtcaaaa ccaacagaga agactatctt gatccagaaa
2751 caatactact cctgatggaa cacaaaacat caggaatagc caaggagtta
2801 atccgaaata caagatggaa ccgcactacc ggagatatca tagaacaggt
2851 gatcgatgcg atgtacacca tgttcttagg actaaactac tccgacaaca
2901 aggttgctga aaagatagac gagcaagaga aggccaagat cagaatgacc
2951 aagctccagc tctgcgacat ctgctacctt gaagaattta catgtgatta
3001 tgagaagaac atgtacaaaa cggaactggc ggatttccca ggatatatca
3051 accagtacct gtcaaaaatc cccatcattg gagaaaaagc gctaacacgc
3101 tttaggcatg aagctaacgg aaccagcatc tacagcttag gtttcgcggc
3151 aaagatagta aaagaagaac tatctaaaat ctgcgcatta tccaagaagc
3201 agaagaagtt gaagaaattc aacaagaaat gctgcagcat cggcgaagct
3251 tcagtagaat atggatgcaa gaaaacatcc aagaagaagt atcataataa
3301 gcgatacaag aaaaaatata aggtctataa accttataag aagaagaaga
3351 aattccgatc cggaaaatac ttcaagccca aggagaagaa gggctcaaag
3401 caaaagtatt gcccaaaagg caagaaagac tgcagatgtt ggatctcgaa
3451 cattgaaggc cattacgcca acgaatgtcc taatcgacaa agctcggaga
3501 aggctcacat ccttcaacaa gcagagaaat tgggtctcca gcccattgaa
3551 gaaccctatg aaggagttca agaagtattc atcttagaat acaaagaaga
3601 ggaagaagaa acctctacag aagaaagtga tggatcatct acttctgaag
3651 actcagactc agactgagca ggtgatgaac gtcaccaatc ccaattcgat
3701 ttacatcaag ggaagactct acttcaaggg atacaagaag atagagcttc
3751 actgttttgt agacacggga gcaagcttat gcatagcatc caagttcgtc
3801 attccagaag aacattgggt caatgcagaa agaccaataa tggtcaaaat
3851 agcagatgga agttcaatca ccatcagcaa agtctgcaaa gacatagact
3901 tgatcatagc gcgcgagata ttcaaaattc ccaccgtcta tcagcaagaa
3951 agtggcatcg atttcataat cggcaacaac ttctgtcagc tatatgaacc
4001 attcatacag tttacggaca gagttatctt cacaaagaac aagtcttatc
4051 ctgttcatat tgcgaagcta acaagagcag tgcgagtagg caccgaagga
4101 tttcttgaat caatgaagaa acgttcaaag actcaacaac ctgagccggt
4151 gaacatttcg acaaacaaga tagaaaatcc actaaaagaa attgctattc
4201 tttcagaggg gaggaggtta tcagaagaaa aactcttcat cactcaacaa
4251 agaatgcaaa aaatcgaaga actacttgag aaagtatgtt cagaaaatcc
4301 attagatcct aacaagacta agcaatggat gaaagcttca atcaagctca
4351 gcgacccaag caaagctatc aaggttaaac ccatgaagta tagcccaatg
4401 gatcgtgaag aatttgacaa gcaaatcaaa gagttactgg accttaaagt
4451 cattaagccc agtaaaagcc ctcacatggc accagccttc ttggtcaaca
4501 atgaagccga gaagcgaaga ggaaagaagc gtatggtagt taactacaag
4551 gctatgaaca aagccaccat aggagacgca tacaatcttc ccaataaaga
4601 cgagttactg acacttattc gaggaaagaa gatcttctct tccttcgact
4651 gcaagtcagg attctggcag gttctgctag atcaagaatc aagacctcta
4701 acggcattca catgtcccca aggtcactac gaatggaatg tggtcccttt
4751 cggcttaaag caggcaccat ccatattcca aagacacatg gacgaagcat
4801 ttcgtgtgtt cagaaagttc tgttgcgttt atgtcgacga cattctcgta
4851 ttcagtaaca atgaggaaga tcacctactt cacgtagcaa tgatcttaca
4901 aaagtgcaat caacatggaa tcatcctttc caagaagaaa gcacaactct
4951 tcaaaaagaa gataaacttc cttggtctag aaatagatga aggaacacat
5001 aagcctcaag gacatatctt ggaacatatc aacaaattcc cagataccct
5051 tgaagacaag aagcaacttc agagattctt aggcatccta acatatgcct
5101 ccgattatat cccgaagcta gctcaaatta gaaagcctct gcaagccaag
5151 cttaaagaaa atgttccatg gaaatggaca aaagaggaca ccctctacat
5201 gcaaaaggtg aagaaaaatc tgcaaggatt tcctccacta catcatccct
5251 taccagagga aaagctgatc atcgagaccg acgcatcaga cgactactgg
5301 ggaggtatgt taaaagctat caaaattaac gaaggaacta atactgagtt
5351 aatttgcaga tacgcatctg gaagctttaa agctgcagaa aggaattacc
5401 acagcaatga caaagagaca ttggcggtaa taaatactat aaagaaattc
5451 agtatttatc taactcctgt tcattttctg attaggacag ataatactca
5501 tttcaagagt tttgttaatc ttaattacaa aggagattca aaacttggaa
5551 gaaacatcag atggcaagca tggcttagcc actattcgtt tgatgttgaa
5601 catattaaag gaaccgacaa ccactttgcg gacttccttt caagagaatt
5651 caacaaggtt aattcctaat tgaaatccga agataagatt cccacacact
5701 tgtggctgat atcaaaaggc tactgcctat ataaacacat ctctggagac
5751 tgagaaaatc agacctccaa gcatggagaa catagaaaaa ctcctcatgc
5801 aagagaaaat actaatgcta gagctcgatc tagtaagagc aaaaataagc
5851 ttagcaagag ctaacggctc ttcgcaacaa ggagacctct ctctccaccg
5901 tgaaacaccg gtaaaagaag aagcagttca ttctgcactg gccactttta
5951 cgccaactca agtaaaggct attccagagc aaacggctcc tggtaaagaa
6001 tcaacaaatc cgttgatggc tagtatcttg ccaaaagata tgaacccagt
6051 tcaaactggg ataaggcttg cagtgccagg ggacttttta cgtcctcatc
6101 agggaattcc aatcccacaa aaatctgagc ttagcagcac agttgttcct
6151 ctcagagacg aatcgggtat tcaacaccct catatcaact actacgttgt
6201 gtataacggt ccacacgccg gtatatacga tgactggggt tgtacaaagg
6251 cggcaacaaa cggcgttccc ggagttgcac acaagaagtt tgccactatt
6301 acagaggcaa gagcagcagc tgacgcgtac acaacaagtc agcaaacaga
6351 caggttgaac ttcatcccca aaggagaagc tcaactcaag cccaagagct
6401 ttcgagaggc cttaaccagc ccaccaaagc aaaaagccca ctggctcacg
6451 ctaggaacca aaaggcccag cagtgatcca gccccaaaag agatctcttt
6501 tgccccggag atcaccatgg acgactttct ctatctctac gatctaggaa
6551 gaaagttcga cggagaaggt gacgatacca tgttcaccac tgataatgag
6601 aagattagcc tcttcaattt cagaaagaat gctgacccac agatggttag
6651 agaggcctac gcagcaggtc tcatcaagac gatctacccg agtaataatc
6701 tccaggagat caaatacctt cccaagaagg ttaaagatgc agtcaaaaga
6751 ttcaggacta actgcatcaa gaacacagag aaagatatat ttctcaagat
6801 cagaagtact atcccagtat ggacgattca aggcttgctt cataaaccaa
6851 ggcaagtaat agagattgga gtctctaaga aagtagttcc tactgaatca
6901 aaggccatgg agtcaaaaat tcagatcgag gatctaacag aactcgccgt
6951 gaagactggc gaacagttca tacagagtct tctacgactc aatgacaaga
7001 agaaaatctt cgtcaacatg gtggaagatg acactctcgt ctactccaag
7051 aatatcaaag atacagtctc agaagaccaa agggctattg agacttttca
7101 acaaagggta atatcaggaa acctcctcgg attccattgc ccagctatct
7151 gtcacttcat cgaaaggaca gtagaaaagg aaggtggctc ctacaaagtc
7201 catcattgcg ataaaggaaa ggctatcgtt caagatgcct ctgccgacag
7251 tggtcctaaa gatggacccc cacccacgag gagcatcgtg gaaaaagaag
7301 acgttccaac cacgtcttca aagcaagtgg attgatgtga tatctccact
7351 gactgaaggg atgacgcaca atcccactat ccttcgcaag acccttcctc
7401 tatataagga agttcatttc atttggagag gacacgctga aatcaccagt
7451 ctctctctac aaatctatct ctctctattt tctccataat aatgtgtgag
7501 tagttcccag ataagggaat tagggttctt atagggtttc gctcatgtgt
7551 tgagcatata agaaactctt agtatgtatt tgaatttgta aaatacttct
7601 atcaataaaa tttctaattc ctaaaaccaa aatccagtac taaaagccag
7651 atctcctaaa gtccctatag atctttgtgg tgaatataaa ccagacacga
7701 gacgactaaa cctggagccc agatgccgtt tgaagctaga agtaccgctt
7751 aggcaggagg ccgttaggga aaagatgcta aggcagggtt ggttacgttg
7801 actcccccgt agggttggtt taaatatcat gaagtggact gaagaaagaa
7851 ggaagacatg gaaggataag gttgcaggcc ctgtgcaagg taagaagatg
7901 gaaatttgat agaggtacgc tactatactt atactatacg ctaagagaat
7951 gcttgtattt ataccctata ccccctaata accccttatc aatttaaaga
8001 aataatccgc ataagccccc gcttaaaaaa tt