Sequence of DPV Cauliflower mosaic virus
Cauliflower mosaic virus, complete genome.
ACC No: M90543
Dated: 2010-02-05 | Length: 8033 | CRC: 891472309
ID M90543; SV 1; circular; genomic DNA; STD; VRL; 8033 BP.
XX
AC M90543;
XX
DT 13-JUN-1992 (Rel. 32, Created)
DT 05-FEB-2010 (Rel. 103, Last updated, Version 7)
XX
DE Cauliflower mosaic virus, complete genome.
XX
KW aphid transmission protein; capsid protein; DNA-binding protein;
KW inclusion body matrix protein; movement protein; reverse transcriptase.
XX
OS Cauliflower mosaic virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-8033
RX DOI; 10.1104/pp.101.4.1395.
RX PUBMED; 8310068.
RA Chenault K.D., Melcher U.;
RT "Cauliflower mosaic virus isolate CMV-1";
RL Plant Physiol. 101(4):1395-1396(1993).
XX
DR EPD; EP07015; CAMV_35MJ.
XX
CC Original source text: Cauliflower mosaic virus (individual_isolate
CC CMV-1) DNA.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8033
FT /organism="Cauliflower mosaic virus"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:10641"
FT CDS 364. .1347
FT /codon_start=1
FT /product="movement protein"
FT /db_xref="GOA:Q83165"
FT /db_xref="InterPro:IPR001022"
FT /db_xref="UniProtKB/TrEMBL:Q83165"
FT /protein_id="AAA21732.1"
FT /translation="MDLYPEENTQSEQSHNSENNMQIFKSENSDGFSSDLMISNDQLKN
FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI
FT TKEEITKRLSSLKPEVRKTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRKDC
FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRVNQTLSLIHDFENKNLMNKGDKVMTITYI
FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSDFCTIQNDECNWAIDIAQNKALLG
FT PKTKSQIGNSLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE"
FT CDS 1349. .1828
FT /codon_start=1
FT /product="aphid transmission protein"
FT /db_xref="GOA:Q83166"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="UniProtKB/TrEMBL:Q83166"
FT /protein_id="AAA21733.1"
FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH
FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQLKE
FT IKSLLEAQNTRIKNLEKAIQSLDNKIEPEPLTKKEVKELKESINSIKEGLKNIIG"
FT CDS 1830. .2219
FT /codon_start=1
FT /product="DNA-binding protein"
FT /db_xref="GOA:Q83167"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProtKB/TrEMBL:Q83167"
FT /protein_id="AAA21734.1"
FT /translation="MANLNQIQKEVSEVRSVQKSMKADIKAILELLGSQNPTKESLEAV
FT AAKIVNDLTKLINDCPCNKEILEALGNQPKEQLIEQPKEKGKGLNLGKYSYPNYGVGNE
FT ELGSSGNPKALTWPFKAPAGWPNQF"
FT CDS 2201. .3670
FT /codon_start=1
FT /product="capsid protein"
FT /db_xref="GOA:Q83168"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProtKB/TrEMBL:Q83168"
FT /protein_id="AAA21735.1"
FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQIID
FT LTSLPSDNLQVEPVMTTTDDSISEEESEFLLAIGETSEDESDSGEEPEFEQVRMDRTGG
FT TEIPKEEDGEPSRYNERKRKTTEGRYFPTQPKTIPGQKQTSMGMLNIDCQTNRRTLIDD
FT WAAEIGLIVKTNREDYLDPETILLLMEHKTSGIPKELIRNTRWNRTTGDIIEQVIDAMY
FT TMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFPG
FT YINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQKKLKKF
FT NKKCCSIGEASAEYGCKKTSTKKYHKKRYKKKYKVYKPYKKKKKFRSGKYFKPKEKKGS
FT KQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIEEPYEGVQE
FT VFILEYKEEEEETSTEESDDESSTSEDSDSD"
FT CDS 3630. .5672
FT /codon_start=1
FT /product="reverse transcriptase"
FT /db_xref="GOA:Q83169"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="UniProtKB/TrEMBL:Q83169"
FT /protein_id="AAA21736.1"
FT /translation="MMNHLLLKTQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFV
FT DTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEIFKIPTV
FT YQQESGIDFIIGNNFCQLYEPFIQFTDRVIFAKNKSYPVHIANVTRAVRVGTEGFLESM
FT KKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCS
FT ENPLDPNKTKQWMKASIKLSDPNKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS
FT PHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSF
FT DCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFC
FT CVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTH
FT KPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKW
FT TKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGINTELI
FT CRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPAHFLTRTDNTHFKSFVNLNYK
FT GDSKLGRNIRWQAWLNHYSFDVEHIKGTDNHFVDFLSREFNKVNS"
FT CDS 5776. .7338
FT /codon_start=1
FT /product="inclusion body matrix protein"
FT /db_xref="GOA:Q83170"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="InterPro:IPR009027"
FT /db_xref="InterPro:IPR011320"
FT /db_xref="UniProtKB/TrEMBL:Q83170"
FT /protein_id="AAA21737.1"
FT /translation="MENIEKLIMQEKILMLELDLVRAKISLARANGSSQQGDLPLHRET
FT PVKEEAVHSALATFTPTQVKAIPEQTAPGKESTNPLMVSILPKDMNPVQTGIRLTVPGD
FT FLRPHQGIPIPQKSELSSTVAPLRAESGIQHPHINYYVVYNGPHAGIYDDWGCTKAATN
FT GVPGVAHKKFATITEARAAADAYTTSQQTDRLNFIPKGEAQLKPKSFAKALTSPPKQKA
FT HWLTLGTKRPSGDPGPKEISFAPEITMDDFLYLYELGRKFDGEGDDTMFTTDNEKISLF
FT NFRKNADPQMVREAYAAGLIKTIYPSNNLQEIKYLPKKVKDAVKRFRTNCIKNTEKDIF
FT LKFRSTIPVWTIQGLLHKPRQVIEIGVSKKVVPTESKAMESKIQIEALTELAVKTGEQF
FT IQSLLRLNDKKKIFVNMVEHDTLVYSKNIKDTVSEDQRAIETFQQRVISGNLLGFHCPA
FT ICHFIERTVEKEGGSYKCHHCDKGKAIVQNASADSGPKDGSPPTRSIVEKGDVPTTSSK
FT QVD"
XX
SQ Sequence 8033 BP; 2925 A; 1658 C; 1572 G; 1878 T; 0 other;
m90543 Length: 8033 05-FEB-2010 Type: N Check: 4777 ..
1 ggtatcagag ccatgaatcg gtttaagacc aaaattcaag agggtaaaac
51 ctcatcaaaa tacgaaagag ttcttaactc taaagataaa agatctttca
101 agatcgaaca tagttccctc acaccggtga ccgacaggtt taccaccgta
151 aggtttcaga acaacatcga aagcgtttac gccaacttcg actctcagct
201 caagtcgtcg tacgatggta gatctaaaaa gatcaagaat ctaagcctta
251 aaaatcttag atgctacgaa gccttcctca ggaagtacct tctggaacaa
301 taaatctctc tgagaatagt actctattga gtatccacag ataaaataat
351 tttctgtgtt gagatggatt tgtatccaga agaaaatacc caaagcgagc
401 aatcgcataa ttctgaaaat aatatgcaaa tatttaaatc agaaaattcg
451 gatggattct cctccgatct aatgatctca aacgatcaat taaaaaatat
501 ctctaaaacc caattaactt tggaaaaaga aaagatattt aaaatgccta
551 acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagatt
601 ctctactgcg tctcgacaaa agaattatca gtggacattc acgatgccac
651 aggtaaggta tatcttcctt taatcactaa ggaggagata actaaaagac
701 tttccagctt aaaacctgaa gtcagaaaga ccatgtccat ggttcatctt
751 ggagcggtca aaatattgct taaagctcaa tttcgaaatg ggattgatac
801 cccaatcaaa attgctttaa tcgatgatag aatcaattct agaaaagatt
851 gccttctcgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt
901 actgtatacc ccaagtttgg aataagcctt aatacccaaa gagttaacca
951 aaccttaagc cttattcatg attttgagaa taaaaatctt atgaataaag
1001 gtgataaagt tatgaccata acctatatcg taggatatgc attaactaat
1051 agtcatcata gcatagatta tcaatcgaat gctacaattg aactagaaga
1101 cgtatttcaa gaaattggaa atgtccagca atctgatttt tgtacaatac
1151 aaaatgacga atgcaattgg gccattgata tagcccaaaa caaagcctta
1201 ttaggtccta aaaccaaatc ccaaattggt aatagtcttc aaataggaaa
1251 cagtgcttca tcctctaata ctgaaaatga attagctagg gtaagccaga
1301 acatagatct tttaaagaat aaattaaaag aaatctgtgg agaataaaat
1351 gagcattacg ggtcaaccgc atgtttataa aaaagatact attattagac
1401 taaaaccatt gtctcttaat agtaataata gaagttatgt ttttagttcc
1451 tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga
1501 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg
1551 gcttaagcaa agacccctcg gagtccaaat caaaaaaccc gtcagttttt
1601 aatactgcaa aaaccatttt taagagtggg ggggttgatt actcgagcca
1651 attaaaggaa ataaaatctc ttttagaagc tcaaaacact agaattaaaa
1701 atctagaaaa agcaattcaa tccttagata ataagattga accagagccc
1751 ttaactaaaa aagaagttaa agagctaaaa gaatcgatta actcgatcaa
1801 agaaggatta aagaatatta ttggctgaaa tggctaatct taatcaaatc
1851 caaaaagaag tctctgaagt ccgcagtgtc caaaaatcca tgaaagcgga
1901 tataaaagct atcttagaat tgctaggatc ccaaaatcct actaaagaaa
1951 gcttagaagc cgttgcagcg aaaatcgtta atgacttaac caagctcatc
2001 aatgattgtc cttgtaacaa agagatatta gaagccttag gaaatcagcc
2051 taaagagcaa ctaatagaac aacctaaaga aaaaggtaaa ggccttaatc
2101 taggaaaata ttcttacccc aattacggcg taggaaatga agaattagga
2151 tcctctggaa accctaaagc tttaacttgg cccttcaaag ctccagcagg
2201 atggccgaat caattttaga caggaccatt aaccggttct ggtataatct
2251 gggagaagat tgtctctcag aaagtcaatt cgatcttatg ataaggttaa
2301 tggaagagtc ccttgacggg gaccaaatta ttgatctaac ctctctacct
2351 agtgataact tgcaggtcga accagttatg acaactaccg acgactcgat
2401 ctcggaagaa gaatcagaat tccttctagc aataggagaa acatctgaag
2451 acgaaagcga ttcaggagaa gaacctgaat tcgaacaagt tcgaatggat
2501 cgaacaggag gaacggagat tcccaaagaa gaagatggtg aaccatctag
2551 atacaatgag agaaagagaa agaccacgga aggccggtac tttccaactc
2601 aaccaaagac cattccagga caaaagcaaa cgtctatggg aatgctcaac
2651 attgactgcc aaaccaatcg aagaacctta atcgatgatt gggcagcaga
2701 aatcggactg atagtcaaga ccaacagaga agactatctt gatccagaaa
2751 caatactact cttgatggaa cacaaaacat caggaatacc gaaggagtta
2801 atccgaaata caagatggaa ccgcactacc ggagatatca tagaacaggt
2851 gatcgatgcg atgtacacca tgttcttagg acttaactac tccgacaaca
2901 aggttgctga aaagatagac gagcaagaga aggccaagat cagaatgacc
2951 aagctccagc tctgcgacat ctgctacctt gaagaattta catgtgatta
3001 cgaaaagaac atgtacaaga cggaactggc ggatttccca ggatacatca
3051 accagtacct gtcaaaaatc cccatcatag gagaaaaagc gctaacacgc
3101 tttaggcatg aagctaacgg aaccagcatc tacagcttag gtttcgcggc
3151 gaagatagta aaagaagaac tatctaaaat ctgcgactta tccaagaagc
3201 agaagaagtt gaagaaattc aacaagaagt gttgcagcat cggagaagct
3251 tcagcagaat atggatgtaa gaagacatct accaagaagt atcacaagaa
3301 gcgatacaag aaaaaatata aggtctataa accttataag aagaagaaga
3351 aattccgatc aggaaaatac ttcaagccca aagaaaagaa gggctcaaag
3401 caaaagtatt gcccaaaagg caagaaagat tgcagatgtt ggatctgcaa
3451 tatcgaaggc cattacgcca acgaatgtcc taatcgacaa agctcggaga
3501 aggctcacat ccttcaacaa gcagaaaagt tgggcctcca gcccattgaa
3551 gaaccctatg aaggagttca agaagtattc atcttagaat acaaagaaga
3601 ggaagaagaa acctctacag aagaaagcga tgatgaatca tctacttctg
3651 aagactcaga ctcagactga gcaggtgatg aacgtcacca atcccaattc
3701 gatctacatc aagggcagac tctacttcaa aggatacaag aagatagagc
3751 ttcactgttt tgtagatacg ggagcaagct tatgcatagc atccaagttc
3801 gtcataccag aagaacattg ggttaatgca gaaagaccaa taatggtcaa
3851 aatagcagat ggaagctcaa tcaccatcag caaagtctgc aaagacatag
3901 acttgatcat agccggcgag atattcaaaa ttcccaccgt ctatcagcaa
3951 gaaagtggca tcgatttcat aatcggcaac aacttttgtc agctgtatga
4001 accattcata cagtttacag atagagttat cttcgcaaag aacaagtcct
4051 atcctgttca tattgcgaac gtaacaagag cagtgcgagt aggcaccgaa
4101 ggatttcttg aatcaatgaa gaaacgttca aagactcaac aaccggagcc
4151 agtgaacatt tctacaaaca agatagaaaa tccacttgaa gaaattgcta
4201 ttctttcaga ggggaggagg ttatcagaag aaaaactctt catcactcaa
4251 caaagaatgc aaaaaatcga agaactactt gagaaagtat gttcagaaaa
4301 tccattagat cctaacaaga ctaagcaatg gatgaaagct tcaatcaagc
4351 ttagcgaccc aaacaaagct atcaaggtta aacccatgaa gtatagccca
4401 atggatcgtg aagaatttga caagcaaatc aaagagttac tggaccttaa
4451 agtcattaag cccagtaaaa gccctcacat ggcaccagcc ttcttggtca
4501 acaacgaagc cgagaagcga agaggaaaga aacgtatggt agtcaactac
4551 aaagctatga acaaagccac cgtaggagac gcatacaatc ttcccaacaa
4601 agacgagtta cttacactca ttcgaggaaa gaagatcttc tcttccttcg
4651 actgtaagtc cggattctgg caagttctac ttgatcaaga atcaagacct
4701 ctaacggcgt tcacatgccc acaaggtcac tacgaatgga atgtggtccc
4751 tttcggccta aagcaggcac catccatatt ccagagacac atggacgaag
4801 catttcgtgt gttcagaaag ttctgttgcg tttatgtcga tgacattctc
4851 gtattcagta acaacgaaga agatcaccta cttcatgtag caatgatctt
4901 acaaaagtgt aatcaacatg gaattatcct ttccaagaag aaagcgcaac
4951 tcttcaagaa gaagataaac ttccttggtc tagaaataga tgaaggaaca
5001 cacaagcctc aaggacatat cttggaacat atcaacaaat tcccagatac
5051 ccttgaagac aagaagcaac ttcagagatt cttaggcatc ctaacatatg
5101 cctctgatta tattccgaag ctagctcaaa tcagaaagcc tctgcaagcc
5151 aagcttaaag agaatgttcc atggaaatgg acaaaagagg acaccctcta
5201 catgcaaaag gtgaagaaaa atctgcaagg atttcctcca ctacatcatc
5251 ccttaccaga ggagaagctg atcatcgaga ccgacgcatc agatgactac
5301 tggggaggta tgttaaaagc tatcaaaatt aacgaaggta ttaatactga
5351 gttaatttgc agatacgcat ctggaagctt taaagctgca gaaaggaatt
5401 accacagcaa tgacaaagag acactggcgg taataaatac tataaagaaa
5451 ttcagtatct atctaactcc tgctcatttc ctgaccagaa cagataatac
5501 tcatttcaag agttttgtta accttaatta caaaggtgat tcaaaacttg
5551 gaagaaacat cagatggcaa gcatggctta accactattc atttgatgtt
5601 gaacatatta aaggaaccga caaccacttt gtggacttcc tttcaagaga
5651 attcaataag gttaattcct agttgaaatc cgaagataag attcccacac
5701 acttgtggct gatatcaaaa ggctactgcc tatataaaca catctctgga
5751 gactgagaaa atcagacctc caagcatgga gaacatagaa aaactcatca
5801 tgcaagagaa aatactaatg ctagagctcg atctagtaag agcaaaaata
5851 agcttagcaa gagctaacgg ctcttcgcaa caaggagacc tccctctcca
5901 ccgtgaaaca ccggtaaaag aagaagcagt tcattctgca ctggccactt
5951 ttacgccaac tcaagtaaag gctattccag agcaaacggc tcctggtaaa
6001 gaatcaacaa atccgttgat ggttagtatc ttgccaaaag atatgaaccc
6051 agttcaaact gggataaggc ttacagtgcc aggggacttt ttacgtcctc
6101 atcagggaat tccaatccca caaaaatctg agcttagcag cacagttgct
6151 cctctcagag cagaatcggg tattcaacac cctcatatca actactacgt
6201 tgtgtataac ggtccacacg ccggtatata tgatgactgg ggttgtacaa
6251 aggcggcaac aaacggcgtt cccggagttg cacacaagaa gtttgccact
6301 attacagagg caagagcagc agctgacgcg tacacaacaa gtcagcaaac
6351 agacaggttg aacttcatcc ccaaaggaga agcccaactc aagcccaaga
6401 gctttgcgaa ggccttaacc agcccaccaa agcaaaaagc ccactggctc
6451 acgctaggaa ccaaaaggcc cagcggtgat ccaggcccaa aagagatctc
6501 ctttgccccg gagatcacaa tggacgattt cctctatctt tacgaacttg
6551 ggaggaagtt cgacggagaa ggtgacgata ccatgttcac cactgataat
6601 gagaagatta gcctcttcaa tttcagaaag aatgctgacc cacagatggt
6651 tagagaggcc tacgcagcag gtctcatcaa gacgatctac ccgagtaata
6701 atctccagga gatcaaatac cttcccaaga aggttaaaga tgcagtcaaa
6751 agattcagga ctaactgcat caagaacaca gagaaagata tatttctcaa
6801 gttcagaagt actattccag tatggacgat tcaaggcttg cttcataaac
6851 caaggcaagt aatagaaatt ggagtctcta agaaagtagt tcctactgaa
6901 tcaaaggcca tggagtcaaa aattcagatc gaggctctaa cagaactcgc
6951 cgtgaagact ggcgaacagt tcatacagag tcttttacga ctcaatgaca
7001 agaagaaaat cttcgtcaac atggtggagc acgacactct cgtctactcc
7051 aagaatatca aagatacagt ctcagaagac caaagggcta ttgagacttt
7101 tcaacaaagg gtaatatcgg gaaacctcct cggattccat tgcccagcta
7151 tctgtcactt catcgaaagg acagtagaga aggaaggtgg ctcctacaaa
7201 tgccatcatt gcgataaagg aaaggctatc gttcaaaatg cctctgccga
7251 cagtggtccc aaagatggat ccccacccac gaggagcatc gtggaaaaag
7301 gagacgttcc aaccacgtct tcaaagcaag tggattgatc tcacatctcc
7351 actgacgtaa gggatgacgc acaatcccac tatccttcgc aagacccttc
7401 ctctatataa ggaagttcat ttcatttgga gaggacacgc tgaaatcacc
7451 agtctctctc tacaaatcta tctctctcta ttttctccgt aataatgtgt
7501 gagtagttcc cagataaggg aattagggtt cttatagggt ttcgctcatg
7551 tgttgagcat ataagaaacc cttagtatgt atttgtattt gtaaaatact
7601 tctatcaata aaatttctaa ttcctaaaac caaaatccag tactaaaatc
7651 cagatctcct aaagtcccta tagatctttg tcgtgaatat aaaccagaca
7701 tgagacgact aaacctggag cccagacgcc gttcgaagct agaagtaccg
7751 cttaggcagg aggccgttag ggaaaagatg ctaaggcagg gttggttacg
7801 ttgactcccc tgtaggtttg gtttaaatat gatgaagtgg acggaaggaa
7851 ggaggaagac atggaaggat aaggttgcag gccctgtgca aggtaagaag
7901 atggaaattt gatagaggta cattactata cctatactat aagctgaggg
7951 aatcgttgtt tttaccctat atcatctaat aaccccttat cgatttaaag
8001 aaataatccg cataagcccc caaacaaaaa att