Sequence of DPV Hop stunt viroid

Hop stunt viroid (HSVd), complete genome.

ACC No: U02527

Dated: 2006-11-14 | Length: 303 | CRC: 379715275

                
ID   U02527; SV 1; linear; genomic RNA; STD; VRL; 303 BP.
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AC   U02527;
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DT   22-JAN-1994 (Rel. 38, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 6)
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DE   Hop stunt viroid (HSVd), complete genome.
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KW   .
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OS   Hop stunt viroid
OC   Viroids; Pospiviroidae; Hostuviroid.
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RN   [1]
RP   1-303
RX   PUBMED; 7732666.
RA   Hsu Y.H., Chen W., Owens R.A.;
RT   "Nucleotide sequence of a hop stunt viroid variant isolated from citrus
RT   growing in Taiwan";
RL   Virus Genes 9(2):193-195(1995).
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RN   [2]
RP   1-303
RA   Owens R.A.;
RT   ;
RL   Submitted (13-OCT-1993) to the EMBL/GenBank/DDBJ databases.
RL   Robert A. Owens, Molecular Plant Pathology Laboratory, Beltsville
RL   Agricultural Research Center, 10300 Baltimore Avenue, Beltsville, MD 20705,
RL   USA
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CC   NCBI gi: 409021
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FH   Key             Location/Qualifiers
FH
FT   source          1. .303
FT                   /organism="Hop stunt viroid"
FT                   /specific_host="Citrus medica L. var. ethrog Engl."
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12893"
FT   variation       154. .181
FT                   /replace="agcuucgaaacaccaucgaucgucccug"
FT                   /frequency=".4"
FT                   /note="Nine of 15 full-length cDNA clones sequenced
FT                   contained a U/A transition at position 154, and 7 of these
FT                   9 clones also contained a U/G transition at position 181.
FT                   Phenotypic effects are unknown."
XX
SQ   Sequence 303 BP; 63 A; 86 C; 82 G; 72 T; 0 other;

u02527 Length: 303  14-NOV-2006  Type: N  Check: 432  ..

       1  ctggggaatt ctcgagttgc cgcataaggc aagcaaagaa aaaacaaggc
      51  agggaggaga cttacctgag aaaggagccc cggggcaact cttctcagaa
     101  tccagcgaga ggcgtaggag agagggccgc ggtgctctgg agtagaggct
     151  tcttgcttcg aaacaccatc gatcgtccct tcttctttta ccttctcctg
     201  gctcttcgag tgagacgcga ccggtggcat cacctctcgg ttcgtcttcc
     251  aacctgcttt ttgtctatct gagcctctgc cgcggatcct ctcttgagcc
     301  cct