Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus-Severe segment B, complete sequence.
ACC No: U15017
Dated: 2003-05-29 | Length: 2696 | CRC: 878600261
!!NA_SEQUENCE 1.0
ID TL15017 standard; circular genomic DNA; VRL; 2696 BP.
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AC U15017;
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SV U15017.2
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DT 01-OCT-1994 (Rel. 41, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 9)
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DE Tomato leaf curl New Delhi virus-Severe segment B, complete sequence.
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KW .
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OS Tomato leaf curl New Delhi virus-Severe
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC Tomato leaf curl New Delhi virus.
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RN [1]
RP 1-2696
RX MEDLINE; 95146957.
RX PUBMED; 7844539.
RA Padidam M., Beachy R.N., Fauquet C.M.;
RT "Tomato leaf curl geminivirus from India has a bipartite genome and coat
RT protein is not essential for infectivity";
RL J. Gen. Virol. 76(Pt 1):25-35(1995).
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RN [2]
RP 1-2696
RA Padidam M.;
RT ;
RL Submitted (21-SEP-1994) to the EMBL/GenBank/DDBJ databases.
RL Division of Plant Biology, The Scripps Research Institute, 10666 North
RL Torrey Pines Road, La Jolla, CA 92037, USA
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RN [3]
RC Sequence update by submitter
RP 1-2696
RA Padidam M.;
RT ;
RL Submitted (10-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL Division of Plant Biology, The Scripps Research Institute, 10666 North
RL Torrey Pines Road, La Jolla, CA 92037, USA
XX
RN [4]
RC Sequence update by submitter
RP 1-2696
RA Padidam M., Fauquet C.M.;
RT ;
RL Submitted (11-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL ILTAB, Danforth Plant Science Center, 975 N. Warson Rd., St. Louis, MO
RL 63132, USA
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DR SPTREMBL; Q809H0; Q809H0.
DR SPTREMBL; Q809H1; Q809H1.
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CC On Mar 11, 2003 this sequence version replaced gi:551160.
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FH Key Location/Qualifiers
FH
FT source 1. .2696
FT /db_xref="taxon:223351"
FT /mol_type="genomic DNA"
FT /note="DNA component that causes severe symptoms"
FT /organism="Tomato leaf curl New Delhi virus-Severe"
FT /isolate="New Delhi"
FT /specific_host="Lycopersicon esculentum"
FT /clone="pMPB1"
FT /segment="B"
FT CDS 405. .1250
FT /codon_start=1
FT /db_xref="SPTREMBL:Q809H1"
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /protein_id="AAO59426.1"
FT /translation="MVFPLPHISYPSQMAFPSPYSTPRRSGYPFNRTYNGNKSFRLWKT
FT RKYQNWKRYRSTHSIARSPTELFGDPISKQYTRKEICETQEGSEYLLHNNRYMTSYVTY
FT PSKTRTGTDNRVRSYIKLKSLNISGTFAVRKSDLMTEVVQTNGLYGVMSIVVVRDKSPK
FT IYSATQPLIPFVELFGSVNACRGSLKVAERHHERFVLLNQTSIVVNTPHSNAIKKFCIR
FT NCIPRTYTTWVTFKDEEEDSCTGRYSNTLRNAIILYYVWLSDVSSQVDLYSNVILNYIG
FT "
FT CDS complement(1276. .2154)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q809H0"
FT /gene="BC1"
FT /product="movement protein"
FT /protein_id="AAO59427.1"
FT /translation="MSIGNDGMGMGVGGYIQSERVEYALTNDAAEVTLSFPSMFEQKLS
FT QLRNRCMKIDHVVLEYRSQVPINAVGHVVVEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSSFFSLKDKNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQ
FT TKEFTMNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPYLAIGPNESWASRSEIGLS
FT SVTSRPYKNLSGLDDSAIDPGPSASQAGSITREEIADIITEDCRAMYKIQCKCSSIEER
FT VINFKPNLFKK"
XX
SQ Sequence 2696 BP; 771 A; 601 C; 508 G; 816 T; 0 other;
U15017 Length: 2696 January 7, 2004 15:41 Type: N Check: 7604 ..
1 accgaaaggc cgcgaaaatt ttgaccccct tatcctgacc gttgatgcgt
51 aatcattgca cgccgttatc cgtccgattt gcaacacgtg tatcccacta
101 acagacttta tggaaaataa atgtgtgaat gcgtctcttt tctgcatatg
151 tgttccccat atgtctttat cgtacttcta ttatatgcgt ctgtggtccc
201 cccgcattat ataaagtctt tcacataaat caaattgcct tctttgctat
251 gtatattttg atcggtcgag atcaaaatta atatgttgcg aacatatccg
301 tcgttcgatc ttatgagata tgctttaatt caaacaatac ttgtttgaat
351 tttatgcacg ctgtacaata ctagtttata aaactgctac atatgtgaca
401 ttacatggtg tttccgttgc cacacatttc ctatcccagc caaatggcgt
451 ttccctctcc ttattccacg cctcgtcgtt cgggttaccc attcaacaga
501 acatacaacg gaaacaagag tttccgcttg tggaagaccc ggaagtatca
551 aaactggaag cgctatcgca gtacccattc catagcacgt tctccaaccg
601 aactgtttgg cgatccaatc tccaaacaat atacgcgtaa ggaaatctgt
651 gaaacacagg agggttcgga gtatctgctg cacaacaatc gttacatgac
701 gtcatatgtc acgtatccat caaaaacaag aactggaacg gacaaccgcg
751 ttcgttccta tatcaagcta aagagtctga acatatctgg gacatttgct
801 gttcgtaaat ctgacttgat gaccgaagtg gtgcaaacaa atggtctata
851 cggagtgatg tctatagttg tagtccgcga taaatctcca aagatttatt
901 ctgcgaccca acctttaata ccgtttgttg agctatttgg atctgttaat
951 gcttgcaggg gcagtctgaa agtggcagaa cgccaccatg aacgcttcgt
1001 acttctgaat caaacatcca tcgttgtcaa taccccacat tccaacgcta
1051 tcaagaaatt ctgcattcgt aactgcatcc caagaactta cacaacctgg
1101 gtaacgttca aggacgaaga agaagatagc tgtactggac gatattctaa
1151 caccctccga aatgcaatta ttttatatta tgtatggtta agcgatgtat
1201 cctcacaagt cgatctttac agcaatgtaa ttcttaatta cattggataa
1251 tatataaaaa tgcagaagaa acatcttatt ttttgaataa atttggctta
1301 aaatttatta cacgctcttc gatactggag catttacatt ggattttata
1351 cattgctcta cagtcttccg taattatatc tgcaatctct tcccttgtaa
1401 tactccccgc ctgtgatgcc gatggacctg gatcaattgc cgaatcatcc
1451 aatccgctca gatttttata tggtctgctg gtgacggacg aaagtccgat
1501 ctccgatctg cttgcccatg attcgttcgg acctatagcc agatagggta
1551 cccgtaacga tcttgaacta tgtcccatta accttgaacc atctacaaga
1601 cgccttgttt gtggtttgga acccacagac cagaaatcaa tgtcgttcat
1651 agtgaattcc ttggtctgta tttctatctt tggtggtcgg aattcgacgt
1701 cagtcgaatg tttagccgac gacagcttca atttccctag catcttacag
1751 aagtgtaccc cattcacgac gtttgtgttc tccactcggt attcaactct
1801 ccaaggattc ttatccttga gagagaagaa tgaggaagag tagtagtgca
1851 ggttgcaatt gcatttgatc ggaattgtga attccgcttg ttttgtgtcc
1901 ccctccgtca atctcatgtc gtgtatctct accacgacat gaccaacagc
1951 attaattgga acctgactgc gatattccag aactacgtga tctattttca
2001 tgcatctatt cctcaactgg ctaagcttct gctcgaacat ggatggaaat
2051 gacaaggtaa cttctgcagc atcgtttgtg agagcgtact caacgcgctc
2101 agattgaata tacccaccta ctcccatacc cataccatca tttcctattg
2151 acatattggc cgcgcagcgc aaaacccact gaaacacaga aggacagact
2201 acgatcaaag aaaccccgac gaagaagaaa ccctagcaaa caacgaagtt
2251 gttttgcaaa gaacggatgt agatggtttt ataatgctat tgcatgtcat
2301 gtctatgtca taccaattac cctaaaatga acggcacata tttttctacg
2351 aaaaaggagt tgtgcatgca tatgggatgt ctgtttattt acggtataaa
2401 ttggaagccc aatttattta attgggctga agtttaaatt cagaagaagt
2451 ccatgaaatt ggcccagcat ccaggtccat tgttaaaatg acatcgtttg
2501 tgtgttattg tgtgtataga agttagagag aagcagcagt ttctctctct
2551 agaactcatc gggtgtctct caacttatct atataattgg tgtctggagt
2601 cctatatata ggtaagacac catatggcat tattgtaatt gtgaaaagaa
2651 aattacttta attcaaattc cctatagcgg cctttcgtat aatatt