Sequence of DPV Lettuce infectious yellows virus
Lettuce infectious yellows virus RNA 1 methyltransferase and RNA-dependent RNA polymerase genes, complete cds.
ACC No: U15440
Dated: 2004-06-19 | Length: 8118 | CRC: 528207211
!!NA_SEQUENCE 1.0
ID LI15440 standard; genomic RNA; VRL; 8118 BP.
XX
AC U15440;
XX
SV U15440.1
XX
DT 17-FEB-1995 (Rel. 42, Created)
DT 19-JUN-2004 (Rel. 80, Last updated, Version 4)
XX
DE Lettuce infectious yellows virus RNA 1 methyltransferase and RNA-dependent
DE RNA polymerase genes, complete cds.
XX
KW .
XX
OS Lettuce infectious yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Crinivirus.
XX
RN [1]
RP 1-8118
RA Klaassen V.A.;
RT ;
RL Submitted (03-OCT-1994) to the EMBL/GenBank/DDBJ databases.
RL Vicki A. Klaassen, Plant Pathology, University of California at Davis, 570
RL Hutchison Hall, Davis, CA 95616, USA
XX
RN [2]
RP 1-8118
RX MEDLINE; 21820275.
RX PUBMED; 11831736.
RA Klaassen V.A., Boeshore M.L., Koonin E.V., Tian T., Falk B.W.;
RT "Genome structure and phylogenetic analysis of lettuce infectious yellows
RT virus, a whitefly-transmitted, bipartite closterovirus";
RL Virology 208(1):99-110(1995).
XX
FH Key Location/Qualifiers
FH
FT source 1. .8118
FT /db_xref="taxon:31713"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Lettuce infectious yellows virus"
FT /isolate="92"
FT /lab_host="Nicotiana clevelandii"
FT /segment="RNA 1"
FT CDS 98. .5719
FT /codon_start=1
FT /db_xref="GOA:Q83044"
FT /db_xref="UniProt/TrEMBL:Q83044"
FT /note="helicase"
FT /product="methyltransferase"
FT /protein_id="AAA61797.1"
FT /translation="MALEVESAFSLSYLLKENKQTSNNLFSLIQVPYTKMTHAKGKKTH
FT LLRCILGSPFETLTKSSIRRSLKNLREVCNLPYCNFKKIPKNISYKYQNPFLKLYEINN
FT NFINCKVGATGNTNSTYDWRNLSTIGNGWSVTSYHNDSVSRLHVSMVNNIPNSNTKKLS
FT WWVTRVRSKNPWKRPYKVIYQRDFRDDGIKPYVSEFILYAPKNRADLEMQSILLSSVEC
FT FQDIKYALNYWTNLKFKEICNSALKRFTQTNIIITPVKPRVVSVNKAREVSSSVEVKLQ
FT RYEREGEVFVVSKAGKEDTRVLNDDNAIRNLFNATLNGGKYKLHPEAKSATGKRFKYYK
FT DGFCWLDVFADANRRIPEWVKPHCLLTGSVLMSCGLWDFAKRKMVSVSHGLLHYDRKLE
FT RSSARAGVRDFVGASNEAVQREDFRDLDLRVEEFAERVLETANLRSDNRLIDNILTRAS
FT DYINKKSKESKELDINVCLSMDEKKMITNLFPDIQMSFNQKSYSNHGVFNAMRACENFY
FT FSRKFKNSDYIDAGGDVVSTLRSKNHNVHICSPRLDLKDAARHIQRATVIDGLKGYGET
FT ISFCTNKTEDCAVNRDIIIAVEVYDMTLRDMAKAMLSHGSRKFEFSCIIPPEIFTKECN
FT VELYEGRLKVTRIGDNVEYYYGSNGETFSHSCQTLKDILSVQVFQFGGRVFKKTLEHSR
FT GQLHFFSICICEKIEPGSVKLKTYYQRSELDKVTLRIPVKDSFGVVTHYIIKEDREFVS
FT SMIEYVANTGIKIDDKMVEWTYSQYRAKKTVTIKSGKVTQKETRIRKELIPGFIAIIMS
FT EGIRAREKTHYLAKMLYTSHYKPSIVNIIFRLIMHFLGGTKRFIYESLVDCLKFLTNSD
FT YIDTIVNTESRIEDLDKWFVFEQNVTITTDAEDQPSILEQSVKTFLSKYSEDVYERGDR
FT SEFELEEFSSEQDLVDQLLNSGGGSKEDEWFYSYIFSIVRTKCTLSLAWRWTNRIFNFI
FT TSCRAKGKDFVKYIYEIIKIIINKPWEALCHYLVQGYKTVLKIPMTCVDSVNYLKRKSL
FT EKILSYFSHERADDEYIFPGYDSDFSEESGDYGDENTELDSRSRCTVIKSKVEMLFRNI
FT KGHIEKFLQRCGIIDQYNKIYHWFKSILTDVDCFNSVLNFITHTGCDALLAVLTGHFSI
FT ASCALKFMTDVVIEKNLSEKHHTTTKLIAGNLTQCIYKLDFIHPIWIPIRWGVKEISKI
FT HIKKKLLNWRSTKEVTNESICKDLVHKSYIKYFDIKKAVWLLWFSLLIIFLHPTLGFFI
FT LFSIYPAIEIKRYYNNVVCFNNIKMSYPHVIDRLGGTYNFAKLKKAVREKFSENKSQGV
FT KISEIPAEKDEDVMPPLEEVETPKRSVGRPSSKQDDIEDECNIKEDPTESLNFSNIEAT
FT SNRYDTLRVGNSKLCKFLRFYPKSKCYANIQTGDLIRDSIEEFYHLERSKLDIEISKMQ
FT RVVEIMNDTGRMLDNVRRMIDDRSMYVTLDGVSWYRLGCKDKNPAKEDFKAIFDHNFNI
FT MEGNAKVKEFAVSSDEWRGMYSNERCRAIEQLFNDNNEMVRRPDVNGLKFYNKPPGAGK
FT TTTIAKLMSKDLKNKVKCLALSYTKVGRLELIDKLKKDGIEKPEKYVKTYDSFLMNNDN
FT ILEIVNLYCDEVFMMHAGHFLTLLTKIAYQNGYCYGDVNQIPFINRDPYTPAYLSREFF
FT RKQDLNYDTYTYRCPLDTCYLLSNLKDEMGNIIYAGGVKNVNEVYPTIRSLNLFGINVV
FT GEVPVEYNAKYLTFTQDEKLNLQRHIDSQGGCRNAVSTVNEAQGCTFSEVNLVRLVQFD
FT NPVMSDINQFVVAISRHTTTFKYFTPHSRLNDRVSNAISSLQSVSDFVLKDYHFRQCL"
FT CDS 5808. .7238
FT /codon_start=1
FT /db_xref="GOA:Q83045"
FT /db_xref="UniProt/TrEMBL:Q83045"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAA61798.1"
FT /translation="MDIISPGVAFYNYLHRTLIFEYSDYYLPPCEDLRITLSKSKPYHP
FT GAYVVSKILGKGERNRPNTWKQVIQSLSHRNFNAPIINHKLDVKRSAQILYDSVVKSLR
FT QDRLTEWYEPILPDLFKIGKWLDDRDGSKYRMLNRRLDFASLADKFKTLNLMVKGETKP
FT KMDLSTYDSYNAPANIVYYQQIVNLYFSPIFLECFARLTYCLSDKIVLYSGMNTDVLAE
FT LIESKLPLGLNAYHTLEIDFSKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDFKYTEYF
FT CRAKATCGVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSLIFS
FT RKHLPNKTQEINKNFGMEAKYIEKSSPYFCSKFIVELNGKLKVIPDPIRFFEKLSIPIR
FT QEDFVNGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSIPVGCSYAALCYIHCCM
FT SNFVSFRRIYDNCEIVWI"
FT CDS 7075. .7899
FT /codon_start=1
FT /db_xref="GOA:Q83046"
FT /db_xref="UniProt/TrEMBL:Q83046"
FT /product="unknown"
FT /protein_id="AAA61799.1"
FT /translation="MIMMSPLYALTKQCVIDTAYRLAVPTQHCAIYTVACRILFLSVGF
FT MTIVKLCGFKMDTSSFIASIEKDNLMDCLISLVEMRDRLRLCNDFPILNYGVNILELLI
FT GKRLNKINNLKNCYVIRELITINISKEWVGKQALKVGLHCFLNLSQAESRHVKYLLSDK
FT ESLNKMNFSRYYVPKVVTDLYLDLIGVLYVNTGYNIDLVEKFIFDKLEFLVYDGEEGFK
FT SPQVEYNDICTVYNLKPIIKYNRWHTDGSIVIECGDVIGKGINKTKKKICNK"
XX
SQ Sequence 8118 BP; 2807 A; 1296 C; 1677 G; 2338 T; 0 other;
U15440 Length: 8118 June 22, 2004 12:21 Type: N Check: 1497 ..
1 ggtaaagtta tacatttacc gttggacaag gtaagattac cgacatccta
51 atagaattgt ataacttttg ctctttcaat cttcttggag aatttcgatg
101 gcactcgaag ttgaaagcgc tttttcttta tcttatttgc taaaagaaaa
151 caaacaaacc tcaaataatc tcttttcgct gatacaagta ccctacacga
201 aaatgaccca tgcgaaagga aagaagacac atcttcttag atgtatttta
251 ggatctccgt ttgagacttt aaccaagtct agcatccgta ggtccctgaa
301 aaacctaaga gaagtctgta atttacctta ttgcaatttt aagaaaatac
351 caaaaaatat aagttataag tatcaaaacc ctttccttaa attatatgaa
401 ataaacaata attttattaa ttgtaaagtg ggcgccactg gtaacacgaa
451 ttcaacgtac gattggcgta atttgtccac tattggtaat ggttggagtg
501 tgacgtcata tcataatgat tctgtcagta ggttacatgt aagtatggta
551 aataacattc ctaattccaa cacgaagaag ctcagttggt gggttactcg
601 agttaggagt aaaaatcctt ggaaacgtcc ctacaaggtt atttaccaaa
651 gggattttcg agatgacggg attaaaccct atgtcagtga atttatttta
701 tatgccccta aaaatagagc tgacttggaa atgcaatcca tactactgtc
751 ttcagtagaa tgtttccagg acattaagta tgccctcaat tactggacca
801 atttaaaatt taaagagatc tgcaatagtg cgcttaaaag gttcactcaa
851 accaatatca ttatcacccc tgtaaaaccc agggttgtga gtgtaaacaa
901 agcgcgagag gtttcgagta gtgtagaagt gaagttgcag agatatgagc
951 gagagggtga agtattcgtt gtgtccaagg caggtaaaga agatacgcga
1001 gtcttgaatg acgacaacgc cattaggaat ctgttcaacg ccactctcaa
1051 tggtggtaaa tacaagcttc atccagaagc aaaatctgca actggaaaaa
1101 gattcaagta ttataaagac ggattttgtt ggctcgacgt ctttgctgat
1151 gccaacagaa gaataccaga gtgggtaaaa ccacattgtc ttctcacggg
1201 atcagttttg atgtcgtgtg gcttgtggga ttttgcaaaa agaaagatgg
1251 ttagtgtgtc gcacggattg cttcattatg ataggaagtt agaaagatct
1301 tcagctagag cgggggtgag ggactttgtt ggtgcctcaa atgaagccgt
1351 gcagagggaa gacttcagag atttagatct acgggttgaa gagttcgccg
1401 agagagtgct agagacggcc aatttgagat ctgataacag attgatagac
1451 aatatattga ccagggcatc agattacatt aataaaaaga gtaaagagtc
1501 taaggagtta gatattaacg tttgtctgtc catggatgag aagaagatga
1551 tcaccaattt atttccggac attcaaatga gttttaacca aaaatcttac
1601 tcaaaccatg gtgtcttcaa tgcaatgagg gcttgcgaaa atttttactt
1651 ctcaaggaag tttaaaaatt cagactatat agacgcaggt ggtgatgtgg
1701 tatccacttt acgttctaaa aaccacaatg tccacatctg ttcgcccagg
1751 ttagatttga aagatgctgc tagacacatc caaagggcca cagttattga
1801 cgggctgaaa ggatatggtg aaaccatatc attctgcacc aacaaaacgg
1851 aagactgcgc ggtgaacaga gatataatca ttgcagttga ggtttatgac
1901 atgactttaa gggacatggc aaaagctatg ttgtctcatg gaagtaggaa
1951 atttgagttt agttgtatca taccacctga gatattcact aaggagtgta
2001 atgtcgaatt gtatgaaggc agactcaaag tgacgaggat tggagataat
2051 gtagaatatt attacgggag caacggagag acgttcagtc atagttgtca
2101 gactctaaaa gacattctat cagttcaagt cttccaattc ggcggccgtg
2151 tgtttaagaa aaccttggag cactctagag gacaattaca cttcttctcc
2201 atatgcattt gcgaaaaaat tgaacctggg agtgtaaaat tgaaaacgta
2251 ttaccagaga agtgaattag ataaagtcac cctgagaata ccagttaaag
2301 acagctttgg ggtggtaaca cattatatca taaaagaaga tagagaattt
2351 gtcagttcta tgatagagta tgttgcgaat acaggcataa aaatagatga
2401 taaaatggtg gaatggacct attctcagta tagggctaag aaaactgtga
2451 ctataaaatc cggaaaggta actcaaaaag agaccaggat tagaaaagaa
2501 ctaattccag ggtttatagc cataatcatg tcagagggga tcagggcaag
2551 agaaaagact cattatcttg ctaaaatgtt gtacaccagt cattataaac
2601 cttcgatagt taatatcatc tttaggttga taatgcattt tttaggtggc
2651 actaaacgat ttatatacga gtcgttggta gactgtttaa aatttttgac
2701 aaacagtgac tacatcgata caatagtcaa caccgagagt cgtatagaag
2751 acttagataa gtggtttgta tttgaacaaa acgtcacgat aaccacggac
2801 gcagaagatc aaccttctat attagaacaa agtgtgaaaa cattcttgag
2851 caagtatagt gaagatgtat atgaaagggg tgatcgtagt gagttcgaat
2901 tagaagaatt ttcaagcgaa caagatctgg ttgatcagtt gttgaactct
2951 ggaggtgggt ctaaggaaga cgaatggttc tattcatata ttttttcaat
3001 agtcagaacc aagtgcactc tgagtttagc ctggagatgg acaaatagaa
3051 tattcaattt cataacatct tgtagagcta aggggaaaga ttttgtaaaa
3101 tatatttatg agatcataaa aattataatc aacaaaccct gggaagcgtt
3151 atgtcactat ttagtccagg gatataaaac tgtattaaaa atacccatga
3201 cttgtgtcga tagtgtaaat tatttgaaga ggaagagtct agagaaaata
3251 ctgtcgtatt tttctcatga gagagctgat gatgagtaca ttttccccgg
3301 atatgatagt gattttagtg aagagtccgg tgattatgga gatgaaaata
3351 ctgaattaga cagtcgcagt cgttgtacag tcattaaatc aaaagtagaa
3401 atgttgttta gaaatatcaa aggtcacatc gaaaaattcc ttcaaagatg
3451 tgggataata gatcaataca ataagatcta tcattggttc aaatctattt
3501 taacagacgt agattgtttt aattcagtat taaattttat aacacacact
3551 ggctgtgatg cattattagc agtcctcaca ggtcatttct caatagctag
3601 ttgtgcgtta aaatttatga ccgatgtggt gattgaaaag aatctcagtg
3651 aaaaacacca caccacaact aaattaatag caggcaattt gacgcaatgc
3701 atatacaaat tggatttcat tcatccaatt tggatcccta ttagatgggg
3751 cgtcaaagaa atatcaaaaa ttcacatcaa aaagaaactt ctaaattggc
3801 gatcaaccaa agaagtcacc aacgagagta tttgtaaaga tttagtgcat
3851 aagtcttaca tcaaatactt tgatataaag aaagcagttt ggttgttatg
3901 gtttagtctt ctaatcatat ttttgcatcc aacgttgggt ttctttatat
3951 tgtttagcat ttatcctgcg attgagataa agaggtacta caacaacgta
4001 gtctgcttta acaacattaa aatgagttat ccacatgtta ttgacagatt
4051 aggaggtacc tacaatttcg ccaaattaaa gaaagccgtt agggagaaat
4101 tttctgagaa caagtctcaa ggggtaaaaa tttcagaaat accagcagag
4151 aaggatgaag atgtcatgcc accactagaa gaagtagaaa cacctaagag
4201 atcagtagga agaccttctt cgaagcaaga tgatattgaa gatgaatgta
4251 atattaaaga agaccctact gagagtttaa atttttcaaa cattgaagcc
4301 acatcaaaca ggtatgacac tcttcgtgta gggaacagca aattgtgcaa
4351 attcctaaga ttttacccca agtctaaatg ttatgctaac atacagactg
4401 gagatttgat tagggatagc atagaggaat tttaccattt agaaagaagt
4451 aaactggata ttgagatcag taaaatgcaa agggtagtag agatcatgaa
4501 tgatactggt cgtatgttgg ataatgtcag acgtatgatc gacgacagat
4551 ccatgtacgt taccttagat ggagtaagct ggtataggtt aggatgtaaa
4601 gataagaatc ccgccaaaga ggactttaaa gccattttcg accacaattt
4651 caacatcatg gaagggaatg cgaaggttaa agaatttgct gtatcatctg
4701 atgaatggag gggtatgtac agcaatgaaa gatgtagagc tatagaacaa
4751 ctcttcaatg ataataatga aatggtaaga agacccgatg tgaatggtct
4801 aaaattttat aataaaccac caggggcagg gaagacgact acaatagcca
4851 aattaatgag caaagattta aaaaataagg tcaaatgtct ggctctatcc
4901 tacaccaaag ttgggcgttt agagttgata gataaattga agaaagatgg
4951 aatcgaaaag cctgagaagt acgttaagac atacgacagt ttcttgatga
5001 acaacgacaa tatcttagaa attgtcaatt tatactgcga tgaggtcttc
5051 atgatgcatg cgggtcactt cttaactcta ttaaccaaga tagcatacca
5101 aaatgggtat tgttatggag atgtcaatca aattcccttc attaataggg
5151 acccatacac acctgcttac ttatcaagag aattctttag gaaacaagat
5201 ctaaactatg acacttatac gtacaggtgc ccattagata cctgttactt
5251 gttgtcgaat ttaaaagatg agatgggtaa catcatttac gctggtggag
5301 tcaaaaatgt gaatgaggtt tatccaacca tcaggtcact aaatttgttc
5351 ggtatcaatg ttgtgggtga agtcccagtc gaatataatg ccaaatattt
5401 aacttttaca caagatgaga agttgaacct acagaggcat atagattcgc
5451 aaggaggttg cagaaacgcg gtcagcactg taaatgaagc gcagggatgc
5501 actttcagtg aagtaaacct ggtcaggttg gttcaatttg ataaccctgt
5551 tatgagcgac ataaatcaat ttgtcgtagc aatttccagg catacaacaa
5601 cattcaaata cttcacacct cactctcgat taaatgatag agtgtccaac
5651 gccatatcat cactacaatc tgttagtgat tttgttttga aagactatca
5701 ttttagacag tgcctttgac gtgtatacgc tgaacttaac gcacagggac
5751 tttaagttac cactgtgtcg accaccagct gcgagatatg agagcataat
5801 agacctgatg gacataatat caccaggggt ggccttttac aattatttac
5851 acaggacgtt gatttttgaa tactcagatt actacttacc tccatgtgaa
5901 gatttgagaa taactttgag caagtccaaa ccataccacc ctggagctta
5951 tgttgtctcg aaaattctcg ggaagggaga aagaaacaga ccgaacactt
6001 ggaaacaagt tattcagtca ctatctcaca ggaattttaa tgcgccaatt
6051 atcaatcaca agttagatgt taaaagaagc gcacaaatac tatatgactc
6101 ggtggtgaaa tcgttaagac aagacaggtt gactgagtgg tatgaaccta
6151 ttttacctga ccttttcaaa atcggtaagt ggttggatga tagagatggt
6201 agcaaatatc gtatgttgaa ccgtagacta gactttgcca gtttagcaga
6251 caagttcaaa actctcaacc tcatggttaa gggtgagacc aagcccaaga
6301 tggatcttag cacatacgac agttacaatg ctccagctaa tatagtctat
6351 taccagcaga tagtcaattt gtatttttca cccatctttt tagagtgttt
6401 cgcaaggttg acttactgtt taagtgataa aatcgttcta tacagcggca
6451 tgaacacaga cgttctagct gagttaattg aaagcaaact accattaggt
6501 cttaacgcat atcacacgct tgagatagat ttcagcaaat ttgataagtc
6551 tcaaggcaca tgcttcaaat tatatgaaga aatgatgtat aagatgtttg
6601 gattttctcc tgagttgtac gatcgagact tcaaatacac ggagtacttc
6651 tgtagagcga aagcaacttg tggagtggat ctcgagttag gaacacagcg
6701 cagaactgga tctccaaaca cttggttgtc taacactcta gttactttag
6751 gtatgatgtt atcatcttac gacattgatg atatagacct actccttgtt
6801 agcggggatg acagtttaat tttttccagg aaacatctac cgaataaaac
6851 ccaagagata aacaaaaact ttgggatgga ggccaagtat atagagaaat
6901 catctccata cttctgctcc aaattcatag ttgagttaaa tggtaagttg
6951 aaagtcatac ctgatccaat acgattcttt gaaaaattgt caattccaat
7001 tagacaagaa gatttcgtaa acggaagcgt agtcaaagaa cggttcatat
7051 cattcaaaga tttgatgaaa gaatatgata atgatgtcgc cgttatacgc
7101 attgacgaag cagtgtgtta tagatacagc ataccggttg gctgttccta
7151 cgcagcattg tgctatatac actgttgcat gtcgaatttt gtttctttcc
7201 gtaggattta tgacaattgt gaaattgtgt ggatttaaga tggacacttc
7251 aagttttatc gcctcgattg aaaaagacaa tttgatggat tgcttgatca
7301 gtttagttga gatgagagat cgtcttaggt tgtgcaacga tttcccaata
7351 ttgaattatg gagttaacat tttagaatta ctaataggca aaaggttgaa
7401 taaaattaat aatttaaaga attgttatgt aattagagaa ctaataacaa
7451 taaatataag taaggagtgg gttggaaagc aagctctaaa agttggctta
7501 cattgcttct taaatctatc tcaagccgaa agcagacatg tcaagtatct
7551 tttgagcgac aaagagtcct taaataagat gaacttctct agatactatg
7601 tccccaaagt ggtaacagat ttgtatttag atttgattgg ggtgttatac
7651 gtgaatacag gatacaacat agatttagta gaaaaattta ttttcgataa
7701 attagaattt ctagtttatg atggagagga gggtttcaaa agtccacagg
7751 ttgaatacaa tgacatatgt acggtctaca atttgaaacc aataataaaa
7801 tacaatcgtt ggcacacaga tggttctata gttatagagt gtggtgacgt
7851 aataggaaaa ggtattaata aaacaaagaa aaaaatttgc aataaatgat
7901 gccaaagcgg agttcgtaaa gaacttcaaa gcaaaaaata aaaataacga
7951 atagggtgtt ttgatagtag ttccccccta tggtctataa gtgttagtat
8001 taataagtct tataataaaa ccaaaaatat attaatatta tatctatgtc
8051 atgtagttaa cataaatata atgtcttcct aaaatccttg gaagactgta
8101 tatatagaat aaaggtcg