Sequence of DPV Subterranean clover stunt virus

Subterranean clover stunt virus coat protein (SCSV5) gene, complete cds.

ACC No: U16734

Dated: 2000-03-04 | Length: 998 | CRC: 1385972877

                !!NA_SEQUENCE 1.0
ID   SC16734    standard; circular DNA; VRL; 998 BP.
XX
AC   U16734;
XX
SV   U16734.1
XX
DT   17-NOV-1994 (Rel. 41, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 4)
XX
DE   Subterranean clover stunt virus coat protein (SCSV5) gene, complete cds.
XX
KW   .
XX
OS   Subterranean clover stunt virus
OC   Viruses; ssDNA viruses; Nanovirus.
XX
RN   [1]
RP   1-998
RX   MEDLINE; 95193233.
RA   Boevink P., Chu P.W., Keese P.;
RT   "Sequence of subterranean clover stunt virus DNA: affinities with the
RT   geminiviruses";
RL   Virology 207(2):354-361(1995).
XX
RN   [2]
RP   1-998
RA   Boevink P.C.;
RT   ;
RL   Submitted (28-OCT-1994) to the EMBL/GenBank/DDBJ databases.
RL   Petra C. Boevink, C.S.I.R.O. Division of Plant Industry, GPO Box 1600,
RL   Canberra ACT 2601, Australia
XX
DR   SPTREMBL; Q87012; Q87012.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .998
FT                   /chromosome="component 5"
FT                   /db_xref="taxon:36772"
FT                   /organism="Subterranean clover stunt virus"
FT                   /isolate="F"
FT                   /lab_host="Trifolium subterraneum cv. Mt. Barker"
FT                   /specific_host="Trifolium subterraneum L."
FT   CDS             367. .876
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q87012"
FT                   /note="coat protein"
FT                   /gene="SCSV5"
FT                   /protein_id="AAA68021.1"
FT                   /translation="MVAVRWGRKGLRSQRRKYSRIAYKPPSSKVVSHVESVLNKRDVTG
FT                   AEVKPFADGSRYSMKKVMLIATLTMAPGELVNYLIVKSNSPIANWSSSFSNPSLMVKES
FT                   VQDTVTIVGGGKLESSGTAGKDVTKSFRKFVKLGSGISQTQHLYLIIYSSDAMKITLET
FT                   RMYIDV"
FT   stem_loop       join(988. .998,1. .17)
FT                   /note="region of sequence and predicted structural
FT                   similarity with the conserved stem-loop sequence in the
FT                   intergenic region of the geminiviruses, which is the origin
FT                   of replication"
XX
SQ   Sequence 998 BP; 270 A; 147 C; 253 G; 328 T; 0 other;

 U16734  Length: 998  December 21, 2001 15:58  Type: N  Check: 5101  ..

       1  tagtattacc ccgtgccggg gtcagagaca tttgactaaa tattgacttg
      51  gaataatagc ccttggatta gatgacacgt ggacgctcag gatctgtgat
     101  gctagtgaag cgcttaagct gaacgaatct gacggaagag cgtcatggtc
     151  cacatgtcta aagaataatg ctttacagct gtattgattt gactttacgc
     201  gctttacttt aattgcttta agtaaagtaa gatgctttac tttgctcgcg
     251  acgaagcaaa gtgattgtag ctgcagaaat tgatgcttta attaccgggt
     301  aacacggttt gattgtgggt ataaatatgt tctgttcgtt ttcttcgttg
     351  tcattttaca acgaagatgg ttgctgttcg atggggaaga aagggtctga
     401  ggtctcaaag gagaaaatat tcgcgaattg cttacaaacc tccttcgtct
     451  aaggttgtaa gtcatgtgga gtctgttctg aataagagag atgttactgg
     501  agcggaggtt aagccattcg ctgatggttc aaggtatagt atgaagaagg
     551  taatgttgat tgcaacatta actatggctc ctggagaatt agttaattat
     601  cttattgtga agagtaattc gcctattgcg aattggagtt cgtctttcag
     651  taatccttcg ttgatggtga aagagtctgt tcaagataca gttacgattg
     701  ttggaggagg aaagcttgag tcttctggta ctgctggtaa agatgtaact
     751  aagtctttta ggaagtttgt taagctgggt tcaggtatta gtcagaccca
     801  gcatttgtat ttaattattt attccagtga tgcgatgaag atcacactgg
     851  agacgagaat gtatattgat gtataattgt gatgattaat gaataaagag
     901  ttgtttttat tctttgaatt actccgcgaa gcggtgtgtt atgtttttgt
     951  tggagacata tgacgtcata tgtctccgcg acaggctggc acggggct