Sequence of DPV Sabia virus
Sabia virus glycoprotein precursor and nucleocapsid protein genes, complete cds.
ACC No: U41071
Dated: 2000-03-04 | Length: 3366 | CRC: -146544977
!!NA_SEQUENCE 1.0
ID SVU41071 standard; genomic RNA; VRL; 3366 BP.
XX
AC U41071;
XX
SV U41071.1
XX
DT 10-AUG-1996 (Rel. 48, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 2)
XX
DE Sabia virus glycoprotein precursor and nucleocapsid protein genes, complete
DE cds.
XX
KW .
XX
OS Sabia virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-3366
RX MEDLINE; 96295431.
RX PUBMED; 8661442.
RA Gonzalez J.P., Bowen M.D., Nichol S.T., Rico-Hesse R.;
RT "Genetic characterization and phylogeny of Sabia virus, an emergent
RT pathogen in Brazil";
RL Virology 221(2):318-324(1996).
XX
RN [2]
RP 1-3366
RA Gonzalez J.P.J., Bowen M.D., Nichol S.T., Rico-Hesse R.;
RT ;
RL Submitted (21-NOV-1995) to the EMBL/GenBank/DDBJ databases.
RL Michael D. Bowen, Special Pathogens Branch, DVRD/NCID, Centers for Disease
RL Control and Prevention, 1600 Clifton Rd., N.E., Atlanta, GA 30333, USA
XX
DR GOA; Q90038.
DR SPTREMBL; Q90037; Q90037.
DR SPTREMBL; Q90038; Q90038.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3366
FT /db_xref="taxon:45709"
FT /mol_type="genomic RNA"
FT /organism="Sabia virus"
FT /strain="SPH114202"
FT CDS 59. .1525
FT /codon_start=1
FT /db_xref="SPTREMBL:Q90037"
FT /note="cleaved to yield G1 and G2 glycoproteins"
FT /product="glycoprotein precursor"
FT /protein_id="AAC55091.1"
FT /translation="MGQLFSFFEEVPNIIHEAINIALIAVSLIAALKGMINLWKSGLFQ
FT LIFFLTLAGRSCSFRIGRSTELQNITFDMLKVFEDHPTSCMVNHSTYYVHENKNATWCL
FT EVSVTDVTLLMAEHDRQVLNNLSNCVHPAVEHRSRMVGLLEWIFRALKYDFNHDPTPLC
FT QKQTSTVNETRVQINITEGFGSHGFEDTILQRLGVLFGSRIAFSNIQDLGKKRFLLIRN
FT STWKNQCEMNHVNSMHLMLANAGRSSGSRRPLGIFSWTITDAVGNDMPGGYCLERWMLV
FT TSDLKCFGNTALAKCNLDHDSEFCDMLKLFEFNKKAIETLNDNTKNKVNLLTHSINALI
FT SDNLLMKNRLKELLNTPYCNYTKFWYVNHTASGEHSLPRCWLVRNNSYLNESEFRNDWI
FT IESDHLLSEMLNKEYIDRQGKTPLTLVDICFWSTLFFTTTLFLHLVGFPTHRHIRGEPC
FT PLPHRLNSRGGCRCGKYPELKKPITWHKNH"
FT misc_feature 1528. .1542
FT /note="intergenic region hairpin structure 1"
FT misc_feature 1545. .1573
FT /note="intergenic region hairpin structure 2"
FT misc_feature 1576. .1613
FT /note="intergenic region hairpin structure 3"
FT CDS complement(1620. .3308)
FT /codon_start=1
FT /db_xref="GOA:Q90038"
FT /db_xref="SPTREMBL:Q90038"
FT /product="nucleocapsid protein"
FT /protein_id="AAC55092.1"
FT /translation="MSNSKEIPSFRWTQSLRRGLSEFTTPVKTDVLRDAKMILDGLDFN
FT QVSLVQRILRKSKRNDGDLDKLRDLNKEVDNLMSMKSSQRDTILKLGDLNKSELMDLAS
FT DLEKLKRKVGQTERSASGGVYLGNLSQSQLTKRSDLLRKLGFQQQQVRSPGVVRIWDVA
FT DPNRLNNQFGSVPALTIACMTKQSDNTMGDVVQALTSLGLLYTVKFPNLIDLEKLTAEH
FT DCLQIVTKDESGLNISGYNYSLSAAVKAGATLLDGGNMLETIRITPDNFSQIIKTTLSI
FT KKKEGMFVDEKPGNRNPYENLLYKICLSGEGWPYIGSRSQIKGRSWENTTVDLSTKPQQ
FT GPRTPEKAGQNIRLSHLTELQESVVREAMGKIDPTLTTWIDIEGTSNDPVELALYQPDT
FT GNYILCYRKPHDEKGFKNGSRHSHGMLLKDLESAQPGLLSYVIGLLPQNMVLTTQGSDD
FT IRRLVDTHGRKDLKIVDIKLASEQARKFEEPIWSDFGHLCKKHNGVIVPKKKKDKDIPQ
FT SSEPHCALLDCLMFQSAIAGQPPQTKLEGLLPDALLFTLEAAFTI"
XX
SQ Sequence 3366 BP; 907 A; 713 C; 727 G; 1019 T; 0 other;
U41071 Length: 3366 September 9, 2003 10:41 Type: N Check: 8625 ..
1 gcgcaccggg gatcctaggc gttttttagt cacgcttaaa tctttgattg
51 cgtcaatcat gggtcaattg ttcagctttt ttgaagaagt tccgaatatc
101 atccatgagg ctatcaacat agctctgata gcagtgagct taattgctgc
151 cttgaaaggg atgattaact tgtggaagag tggccttttc caattgatat
201 tctttttgac tctagcagga agatcgtgtt cttttagaat tggaaggagc
251 acagaattgc aaaacataac gtttgatatg ttgaaggtat tcgaggacca
301 ccccacatct tgcatggtga atcattccac ctactatgtc catgaaaaca
351 aaaatgccac ttggtgtctt gaggtgtctg tgactgatgt taccctgctc
401 atggctgaac atgatcgtca agtcctcaac aatctgtcaa actgtgtgca
451 ccctgcagtt gagcacagaa gcaggatggt tggcttactt gagtggattt
501 ttagagccct aaagtatgac ttcaatcatg atccaacacc gttgtgtcaa
551 aagcaaactt caacagtgaa tgaaacacgt gtgcagataa acatcactga
601 ggggtttggg tctcacgggt ttgaagatac catccttcaa agactagggg
651 ttctattcgg ttcaagaatt gcattttcaa atatccagga tttaggtaaa
701 aaaaggtttt tattgattag aaattcaact tggaaaaatc aatgcgaaat
751 gaatcatgta aactccatgc atttaatgtt ggcgaatgct ggtcgctctt
801 ctggttctag aagaccactc ggcattttct cctggacaat aactgatgca
851 gtgggcaatg acatgcctgg tggttattgt cttgaaagat ggatgctagt
901 gacgtcagat cttaagtgct ttggaaacac agcactagca aaatgtaacc
951 ttgaccacga ttcggaattc tgtgacatgt tgaaattgtt tgagttcaac
1001 aaaaaagcga tagagacatt gaatgacaat acaaaaaaca aggtaaactt
1051 gctgacccac tcaattaatg cattaatatc tgacaactta ctgatgaaga
1101 atcgacttaa agaattgttg aacactcctt attgtaatta caccaaattt
1151 tggtatgtca atcacacagc atcaggggaa cactcattgc cacggtgctg
1201 gcttgttaga aataatagct acttgaatga aagtgaattt agaaatgatt
1251 ggattattga gagtgatcat ttattgtctg aaatgctcaa taaagaatac
1301 atagatagac agggaaagac accgttgact ttggtggata tctgtttctg
1351 gagcactttg tttttcacaa caacactgtt tcttcacctg gtaggctttc
1401 caactcatag acacatacgt ggtgaaccct gcccactacc ccataggctc
1451 aacagtagag gaggatgtag atgtgggaaa taccctgaac taaaaaagcc
1501 aatcacctgg cacaagaacc actagaagga caatcattgt ctcccaccga
1551 cccgggcaat gcccgggtcg gtgtggcccc ccagtccgcg gcaaatgccg
1601 cggactgggg agcaccaatc tagatggtga atgctgcctc cagtgtgaag
1651 agcaatgcat caggcaataa accttccagt ttggtttgag gtggttggcc
1701 tgctatggct gactgaaaca ttagacaatc aagtagggca cagtgtggct
1751 ctgaggactg tgggatgtct ttgtctttct ttttctttgg cacaataact
1801 ccattgtgtt tcttacagag gtgaccaaaa tctgaccaga ttggctcctc
1851 aaactttctc gcctgttcag atgccaattt aatgtcgaca atctttaagt
1901 ctttgcgacc gtgtgtatct actaagcgcc ttatatcatc tgaaccttgg
1951 gtggtgagga ccatgttttg aggaaggagc cctataacat agctgagcaa
2001 gcctggctgt gcagattcta ggtcctttag caacatccca tgtgaatgcc
2051 tgctaccatt tttgaacccc ttctcatcat gtggtttcct ataacagagg
2101 atataattac ctgtgtctgg ttggtacaat gctaattcaa ccggatcatt
2151 actggtaccc tcaatgtcaa tccatgttgt cagagttggg tcaatcttac
2201 ccattgcctc tctcacaact gactcttgca actcagtcaa gtgggagagt
2251 ctaatgttct gacctgcctt ttctggtgtt ctcggccctt gttggggctt
2301 tgtgcttaaa tcaacagtgg tgttttccca tgacctaccc ttgatctggg
2351 atctggagcc aatgtaaggc caaccttctc ctgaaaggca gattttgtac
2401 agaaggtttt cataagggtt tctatttcca ggtttctcat ctacaaacat
2451 gccttccttt ttctttatgg atagggttgt ctttatgatc tgagaaaagt
2501 tgtcaggagt gatccttatg gtttccagca tgttaccacc atccagaagc
2551 gttgcaccag ctttaacagc tgcagaaaga ctatagttat atcctgagat
2601 gttcaagccg ctctcatctt tagtcactat ttgaagacag tcatgttctg
2651 ctgtaagttt ttctaggtca atcaggttgg ggaacttaac tgtataaaga
2701 agtcccaaag atgttagtgc ctgaacaaca tcccccatgg tattgtcact
2751 ttgtttagtc atacaagcga ttgtcagtgc agggacagat ccaaattgat
2801 tattcagcct gttcggatca gctacgtccc aaatccttac aacccctgga
2851 gacctcactt gctgctgttg aaaaccaagt ttccttaaaa gatcagacct
2901 tttggtgagc tgtgattggg aaaggtttcc caggtacaca cctcctgagg
2951 ctgatctttc tgtttgtcca acttttcttt tcagtttctc caggtctgat
3001 gcaagatcca tcagttcaga tttgttgaga tcaccaagtt ttaagattgt
3051 gtctctttgg gaactcttca tgctcatcag gttgtccact tctttattta
3101 ggtctctcag tttatcaaga tctccatcat tccttttaga ctttctaagg
3151 atcctttgaa caagagagac ttgattgaaa tcaagaccat caagtatcat
3201 tttggcatcc ctcagaacat cggtcttcac cggtgttgtg aactcactga
3251 gccctcttct cagggattga gtccatctga agctggggat ttcctttgag
3301 ttgctcattg tggaaaagac ttgctgacca gtaaaggtag acaatttgcc
3351 taggatccac tgtgcg