Sequence of DPV Horseradish curly top virus
Horseradish curly top virus movement protein (V3), (V2), capsid protein (V1), (C2), replication initiator protein (C1) and (C4) genes, complete cds.
ACC No: U49907
Dated: 2005-04-17 | Length: 3080 | CRC: 931953014
!!NA_SEQUENCE 1.0
ID HC49907 standard; genomic DNA; VRL; 3080 BP.
XX
AC U49907;
XX
SV U49907.1
XX
DT 10-APR-1996 (Rel. 47, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Horseradish curly top virus movement protein (V3), (V2), capsid protein
DE (V1), (C2), replication initiator protein (C1) and (C4) genes, complete
DE cds.
XX
KW HrCTV.
XX
OS Horseradish curly top virus
OC Viruses; ssDNA viruses; Geminiviridae; Curtovirus.
XX
RN [1]
RP 1-3080
RX MEDLINE; 96335668.
RX PUBMED; 8757976.
RA Klute K.A., Nadler S.A., Stenger D.C.;
RT "Horseradish curly top virus is a distinct subgroup II geminivirus species
RT with rep and C4 genes derived from a subgroup III ancestor";
RL J. Gen. Virol. 77(Pt 7):1369-1378(1996).
XX
RN [2]
RP 1-3080
RA Stenger D.C., Klute K.A., Nadler S.A.;
RT ;
RL Submitted (24-FEB-1996) to the EMBL/GenBank/DDBJ databases.
RL Drake C. Stenger, Biological Sciences, Northern Illinois University,
RL DeKalb, IL 60115, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3080
FT /db_xref="taxon:46448"
FT /mol_type="genomic DNA"
FT /note="infectious; isolated from horseradish after passage
FT in Capsella bursa-pastoris"
FT /organism="Horseradish curly top virus"
FT /clone="pHRCT"
FT CDS 175. .441
FT /codon_start=1
FT /db_xref="InterPro:IPR009997"
FT /db_xref="UniProt/TrEMBL:Q68539"
FT /gene="V3"
FT /product="movement protein"
FT /protein_id="AAB18922.1"
FT /translation="MMVCLPDWVFLLFIASILLQACTNFYGTFHSGSISKKLSSLVSRF
FT DELFFQIQQVVYTRYPSRSRIVNPRRRGSLSGIPEGGEETVEA"
FT CDS 251. .628
FT /codon_start=1
FT /db_xref="InterPro:IPR009931"
FT /db_xref="UniProt/TrEMBL:Q68540"
FT /gene="V2"
FT /protein_id="AAB18923.1"
FT /translation="MGPFTVGQFPRNYPALLAVSTSCFFRYNKWCILGIRHEVESLTLE
FT EGEAFLGFQKEVKKLLKRKCTFSRKCELYEEIYKKYLSDGPEEKGSLPTVMVEEEEDWA
FT HEKIPMEEACSQDEGPEIEDV"
FT CDS 471. .1232
FT /codon_start=1
FT /db_xref="GOA:Q68541"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProt/TrEMBL:Q68541"
FT /gene="V1"
FT /product="capsid protein"
FT /protein_id="AAB18924.1"
FT /translation="MRRYTRNTYQMGQKRKAPYQPSWSKKRKTGPMRKYQWKRPARKTK
FT ALKLKMYDDMLGAGGLGSTISNNGMITMLNNYVQGIGDSQRSTNTTITKHMKFDMALMG
FT SSSFWDTPNYMTQYHWIIIDKDVGSVFPVKLDDIFDIPSNGQAMPSTFRIRRDSNERFI
FT VKRKWTTHLMSTGAAYGSKDIYKGPSMPNYKKGMNINIRNLNVKTIWKDTGGGKYEDVK
FT ENAILYIVVNDNADNTNMYATLFGNCRCYFY"
FT CDS complement(1576. .1980)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q68542"
FT /gene="C2"
FT /protein_id="AAB18925.1"
FT /translation="MPFLYSWILHYSTMESIKYSIKNLRRTIWEIEATKKQPDLYTLKI
FT KVIEGRGRTVPPGSFMTYYFSFLLDRSDQSFGLVIDEWIRIVRILFRVDDITHLDIEQI
FT GSSFNLALLTYDVNILEIVDSYCTTLKVLF"
FT CDS complement(1928. .2968)
FT /codon_start=1
FT /db_xref="GOA:Q68543"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q68543"
FT /note="replication initiator protein"
FT /gene="C1"
FT /product="rep"
FT /protein_id="AAB18926.1"
FT /translation="MPRQPNSFRIQARNIFLTYPQCTIPKDEMLQLLQNLNWTVVKPTY
FT IRVAAERHADGTPHLHCLIQLSGKSNIKDCRFFDITHPQRSTSFHPNVQSAKDTNAVKN
FT YITKEGDYCESGQYKVSGGTKANKDAVYHNAVNAGGVREALDIIKAGDPKTFVTQHHNV
FT KANLEHIFAKPPEPWNPPYPLSSFTNVPEEMQEWADDYFGRPVADSHKAKSIIIEGNSR
FT TGKTCWARALGTHNYLCGHLDFNMRVYSNEVEYNVIDDVAPTYLKMKHWKELIGAQRDW
FT QSNCKYGKPVQIRGGVPTIILCNPGEGSSFRDFLDKPENDGLRQWTLYNAIFIFLDTPL
FT FDNGIH"
FT CDS complement(2524. .2889)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q68544"
FT /gene="C4"
FT /protein_id="AAB18927.1"
FT /translation="MKCFNCFKTSTGQSSNQHISESPPRDTPTEHRTSTALYNFQESPT
FT SRTADFSTLLTPNGVPLSILMSNQPKTPMPSRITSPKKVIIVNPDNTRSLGEQKQTRTP
FT STTTPSMQEVYERLLTS"
XX
SQ Sequence 3080 BP; 864 A; 557 C; 710 G; 949 T; 0 other;
U49907 Length: 3080 May 10, 2005 10:09 Type: N Check: 3143 ..
1 accggatggc cgcgatgcta ccacgtgtct taaaattgtt ggctggtcaa
51 aagtggcggc gaccggtttt ataaagtaaa gtaaagtaga ccccactagg
101 aaacttggtc ggcaagttta actttatcct tttaaataaa tacggtattt
151 gtacatatat ttatatatgt acaaatgatg gtatgtctac cagactgggt
201 attcctacta ttcatagcta gtattcttct acaggcttgt acgaattttt
251 atgggacctt tcacagtggg tcaatttcca agaaattatc cagccttgtt
301 agccgtttcg acgagttgtt ttttcagata caacaagtgg tgtatactag
351 gtatccgtca cgaagtcgaa tcgttaaccc tagaagaagg ggaagccttt
401 ctgggattcc agaaggaggt gaagaaactg ttgaagcgta agtgtacttt
451 ttctagaaag tgtgagttgt atgaggagat atacaagaaa tacttatcag
501 atgggccaga agagaaaggc tccctaccaa ccgtcatggt cgaagaagag
551 gaagactggg cccatgagaa aataccaatg gaagaggcct gctcgcaaga
601 cgaaggccct gaaattgaag atgtatgatg atatgcttgg tgctggtgga
651 ttgggttcta ccattagcaa taatggtatg attactatgt tgaataatta
701 tgtccagggt attggagata gtcaacggtc tactaacacg actattacga
751 agcatatgaa gtttgatatg gcgctaatgg gcagttctag tttttgggat
801 actccaaatt acatgactca atatcattgg attatcatag acaaggatgt
851 tggttcggtg tttcctgtta agttggatga tatatttgat attccatcaa
901 atggtcaagc tatgccttct actttccgca ttaggagaga tagtaatgag
951 aggtttattg tgaagaggaa gtggactaca catttaatgt ctactggagc
1001 agcttatggt agcaaggata tttacaaggg tccttctatg cctaattaca
1051 agaagggtat gaacatcaat attcgcaact tgaatgtgaa gactatatgg
1101 aaggatactg gtggcgggaa atacgaagat gttaaggaga atgctatact
1151 ttatattgtt gttaatgata atgccgataa tactaatatg tatgctacat
1201 tatttggcaa ttgccgatgt tatttttatt aataaaataa gtaatgtatt
1251 ttaaagaatg tgcttgggtt cctacttttg ccctgccatg tccccttatc
1301 cttagggttt agttttgaag cagagcgagc gcagcgagcg taaacaaccc
1351 gaataaacgg actaggcttt gatctataaa tgcagggctt tagccctgca
1401 tttctagaca aaggcgtcaa tagactgtta actaacagtt atagtatcaa
1451 acgcaatgaa cccgaagggt tcacaaaaaa aaagcaagcg taactgtcaa
1501 gtagcgcgca gaagggggaa aaatcaagat acacacaaaa aggaagacaa
1551 tatattatta aactgcgctt ctttattaaa atagaacttt aagagtagta
1601 caatatgagt cgacgatttc taagatgttt acatcgtatg taagtagagc
1651 aagattgaaa gaagatccta tttgttctat gtccagatga gttatatcgt
1701 ctactctgaa caagatacgt acaatcctta tccattcatc gattaccaaa
1751 ccaaaagatt ggtctgaacg atcaagaaga aaagaaaaat agtaagtcat
1801 aaatgatcca ggtggtactg tcctccctcg gccttcgata accttgattt
1851 tcaaagtgta aagatccggc tgcttctttg ttgcttcgat ctcccatatt
1901 gtgcgcctga gattttttat tgaatattta atggattcca ttgtcgaata
1951 atggagtatc caggaatata aaaatggcat tatataatgt ccattgtctc
2001 aagccgtcat tttcaggctt gtctaaaaaa tctcgaaagc tagatccctc
2051 accaggatta caaagtataa tggtggggac ccctcctcta atttgaaccg
2101 gtttcccgta tttgcaattg ctttgccagt ccctttgggc cccgatgagc
2151 tctttccaat gcttcatctt caagtatgtc ggggctacgt catctatgac
2201 gttatattcc acttcgttgg aatacacgcg catgttgaag tcgaggtgtc
2251 cacacaagta gttgtgtgta cctaacgctc ttgcccagca cgtttttccc
2301 gttctactgt tcccttctat gataatggat ttggccttat ggctgtcggc
2351 aacaggcctg ccaaagtaat catcggccca ctcttgcatt tcttcgggga
2401 cgtttgtgaa ggaggagaga ggatacggcg gattccaggg ttctggtggt
2451 ttcgcgaata tgtgttcaag gttggctttt acattgtgat gttgagtcac
2501 gaatgtcttt ggatccccag cctttatgat gtcaagagcc tctcgtacac
2551 ctcctgcatt gacggcgttg tggtagacgg cgtccttgtt tgcttttgtt
2601 cccccagaga ccttgtattg tccggattca caataatcac cttctttggt
2651 gatgtaattc ttgacggcat tggtgtcttt ggctgattgg acattaggat
2701 ggaaagaggt actccgttgg gggtgagtaa tgtcgaaaaa tctgcagtcc
2751 ttgatgttgg actttcctga aagttgtata aggcagtgga ggtgcggtgt
2801 tccgtcggcg tgtctctcgg cggcgactct gatatatgtt ggtttgacga
2851 ctgtccagtt gaggttttga agcagttgaa gcatttcatc ttttggtatt
2901 gtacactgag gataagtgag aaaaatattt cttgcttgaa tacggaaaga
2951 attaggctgt cttggcattt tgaactggga ctccaggttt taggtttaat
3001 cctgtcatat tcgtggagtt ctggagtctc atttatacta aaacctctta
3051 aggccaatag cggccatccg ttctaatatt