Sequence of DPV Maize stripe virus
Maize stripe virus genomic RNA2, complete sequence.
ACC No: U53224
Dated: 2000-03-04 | Length: 3337 | CRC: -1265277409
!!NA_SEQUENCE 1.0
ID MS53224 standard; RNA; VRL; 3337 BP.
XX
AC U53224;
XX
SV U53224.1
XX
DT 04-MAY-1996 (Rel. 47, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE Maize stripe virus genomic RNA2, complete sequence.
XX
KW .
XX
OS maize stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-3337
RX MEDLINE; 97037714.
RA Estabrook E.M., Suyenaga K., Tsai J.H., Falk B.W.;
RT "Maize stripe tenuivirus RNA2 transcripts in plant and insect hosts and
RT analysis of pvc2, a protein similar to the Phlebovirus virion membrane
RT glycoproteins";
RL Virus Genes 12(3):239-247(1996).
XX
RN [2]
RP 1-3337
RA Estabrook E.M., Suyenaga K., Tsai J.H., Falk B.W.;
RT ;
RL Submitted (01-APR-1996) to the EMBL/GenBank/DDBJ databases.
RL E.M. Estabrook, Plant Pathology, UCD, Davis, CA 95616, USA
XX
DR SPTREMBL; Q83468; Q83468.
DR SPTREMBL; Q83469; Q83469.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3337
FT /chromosome="RNA2"
FT /db_xref="taxon:12330"
FT /note="RNA2 is an ambisense RNA with two ORFs in opposite
FT orientations"
FT /organism="maize stripe virus"
FT CDS 82. .687
FT /codon_start=1
FT /db_xref="SPTREMBL:Q83468"
FT /note="23.5 kDa protein"
FT /gene="pv2"
FT /product="pv2"
FT /protein_id="AAB50194.1"
FT /translation="MAYLMWNKEYYQFLLNNNRHAGSYENIFKMTCSKEDHYMNSHDAI
FT WLLTFCSDFTNPALRTYASQIATESNVFLVRDMQMLSESKVKCWLCDKPVYQETQNLKV
FT ISLPNLLNGFQFATESYHICMKNHCGDDPTKFLTEMVFPPHLRAYYKPNQKMEHKYIVI
FT TNGIPLSKNFNTVTLQTHVEDTEDYVIVGSVECPIKTK"
FT repeat_region 729. .774
FT CDS complement(809. .3307)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q83469"
FT /note="93.9 kDa glycoprotein"
FT /gene="pvc2"
FT /product="pvc2"
FT /protein_id="AAB50195.1"
FT /translation="MRFNIFFIYATLCSLSLSSVIGKVVEDTWMRDRYEPIKSVVKVSC
FT YATAPPCRGNYKLTGFYIEEGEICHNQASINLSETCYSGKYNKELVPHYQFSLFGGIRY
FT KRCKDEPLYDISIIGFKQVKNKAFTLQINTINAELVTYARLKDGFYGLVYVVNTTYCPS
FT EVESESIIHKQVGLTIKPLCTDGVLVYKNSECKVVVKEQEFTMPSCGKIVLPTYDDKIN
FT VCDSTGCQSVSCTASDVCVVYDKMDSIMKIKNYHCSDTYIKSVYIIIVLVVLIICIGTI
FT TIINILCFLRPAFWLCKKILFTITGLCHYQPAIQEVEVDLSTIRVIQDEDDHLIAIEDS
FT IAPNTNLPSRSMTKARKMENGLLYIPMILFFYIAPMTESACQDLVSSLSNIEVCQDGQC
FT GYNTKVQLSLMNTPQDFCFKTKSDVYKIRFNFLKVKCLSTPEYYTNSYSREIAKSDWKC
FT FEGEGCPVDGSYSIWDKSDTLSYDYCVKEFVFFSYCPATHYNWKRIIYKAISTRPCVVR
FT TCNSFKFEIQGYVQKNGVILSELSGFTDKYISKIVDISLLSFNTMNMPKTYVECDNKAY
FT IRAANDLGSFNKELLGHIQCPTREDALTLTRKCVTKVVTEEDQPMIRYEEKDGLNMLEY
FT VGSKPLIGVAVTPDGLSLDTNDVLPVTLSLKIKEPITSLITSTIKLNSTTCKITGVERK
FT FKKTKVRVDLHSKSSISDILSCSGLALCSLTINNEQYGECITTSYHSTDQGSSIRCLLM
FT YSGIPIQCTYNVSPLEITVVAPSLDFNSMEAVKESTTNWMNLIASIIRDNPKLTLMASI
FT LPIGMIIKTIKGFLTDMRQD"
FT misc_feature complement(830. .886)
FT /note="encodes potential transmembrane segment"
FT /gene="pvc2"
FT misc_feature complement(1016. .1018)
FT /note="encodes potential glycosylation site"
FT /gene="pvc2"
FT misc_feature complement(1256. .1258)
FT /note="encodes potential glycosylation site"
FT /gene="pvc2"
FT misc_feature complement(2165. .2167)
FT /note="encodes putative cleavage site"
FT /gene="pvc2"
FT misc_feature complement(2168. .2242)
FT /note="encodes potential transmembrane segment"
FT /gene="pvc2"
FT misc_feature complement(2438. .2518)
FT /note="encodes potential transmembrane segment"
FT /gene="pvc2"
FT misc_feature complement(2837. .2839)
FT /note="encodes potential glycosylation site"
FT /gene="pvc2"
FT misc_feature complement(3080. .3082)
FT /note="encodes potential glycosylation site"
FT /gene="pvc2"
FT sig_peptide complement(3242. .3307)
FT /note="potential signal peptide"
FT /gene="pvc2"
XX
SQ Sequence 3337 BP; 1061 A; 650 C; 549 G; 1077 T; 0 other;
U53224 Length: 3337 December 21, 2001 15:59 Type: N Check: 3474 ..
1 acacaaagtc ctgggtataa caaatagttt atatcaatta atctaatctc
51 gcacaagcaa agagataaga cgtgctatat catggcctat ttgatgtgga
101 ataaggaata ctatcagttc ctcttgaata acaatagaca tgctggatca
151 tatgagaaca tcttcaaaat gacatgctct aaagaagacc actatatgaa
201 ctctcatgat gcaatctggt tgttgacatt ttgctctgac ttcacaaacc
251 cagctctaag aacctatgct agccagattg ccactgagtc aaatgtcttc
301 ttagtgagag acatgcaaat gctttctgaa tcaaaagtga agtgctggtt
351 gtgtgacaaa cctgtatatc aggagaccca gaatttgaaa gtcatatctt
401 tgcctaactt actgaatggt tttcaatttg caacagaatc ataccatata
451 tgcatgaaaa atcattgtgg agatgatcca acaaaatttc tgaccgagat
501 ggtgtttcct ccccacctga gggcttatta caaaccaaat caaaagatgg
551 agcacaaata tattgttatt accaatggaa ttcccctctc aaagaatttc
601 aacactgtta ctctgcaaac acatgttgaa gatactgagg attatgtgat
651 tgttgggagt gtagaatgcc ctatcaagac aaagtagggc ttacactcct
701 aacggacaac atggactgga ccaacggaaa atggtgctaa gcaccacatc
751 cggatgtgga gcttagctca ttttctatta tctaataact atgatcactg
801 aaccttattt aatcttgtct catatctgtc aaaaatcctt ttattgtctt
851 tattatcata cctattggga gtatggaagc cattagagtc agttttgggt
901 tatctctaat gattgatgca atcaagttca tccaattagt ggtagactcc
951 ttgactgctt ccatagagtt gaaatctagg cttggagcca caactgttat
1001 ctccaaagga gacacattgt atgtgcattg tataggaatt cctgagtaca
1051 tcagcaaaca tcttatacta gatccttgat ctgttgaatg ataggatgta
1101 gttatacatt caccatattg ttcattattt atagtcagag agcacaatgc
1151 cagtcctgag caagagagta tatcactaat agaggatttg ctatgcaaat
1201 ccactctaac tttggtcttc ttgaactttc tctcaacacc tgttatcttg
1251 caagtggtag agttcaattt gatagtgcta gttatcaaac tagttatagg
1301 ttccttgatt tttaaggata gagtgactgg aagcacatca tttgtgtcta
1351 aagacagacc atccggtgtg actgccactc caatcagagg ctttgatcct
1401 acatattcta gcatattcaa accatccttt tcttcatatc gaatcatggg
1451 ctggtcttct tcagtaacca ctttagtgac acatttcctt gttagagtga
1501 gtgcatcttc tctggttgga cattgtatgt gtcctaaaag ctccttgttg
1551 aaagaaccta gatcatttgc tgcccgtata tatgccttat tatcgcattc
1601 cacatacgtc tttggcatat tcatggtatt aaaacttaat agagaaatat
1651 caacaatttt ggatatatac ttgtctgtaa aaccagataa ctcagacaaa
1701 attacaccgt tcttttgcac atagccttga atctcaaact taaaactatt
1751 gcaagttctg acaacacagg gcctagtaga tatagctttg tatattattc
1801 ttttccaatt ataatgtgtt gccggacaat aagaaaagaa aacaaattct
1851 ttaacacaat aatcataact caaagtgtct gatttgtccc atatagagta
1901 cgaaccatcc actggacatc cttctccttc aaaacatttc caatcacttt
1951 tggctatctc tctggagtag ctattagtat agtattcagg tgtagataga
2001 cacttgactt tcagaaaatt gaatctaatt ttgtaaacat cagattttgt
2051 cttgaagcag aagtcttgag gtgtattcat caaactcaat tgcacttttg
2101 tattataacc gcattgacca tcttgacaaa cttctatatt agagagacta
2151 gacactaaat cttgacaagc actctctgtc attggtgcta tataaaaaaa
2201 caaaatcatg ggaatgtaca ataacccatt ctccatcttt ctagcctttg
2251 tcatagatct agatgggaga ttagtgtttg gtgcaataga atcttctatt
2301 gctattagat gatcatcttc atcctgaatc actcgaattg tagataagtc
2351 aacctcaact tcttgaatag ctggttggta gtgacacaat ccagtgatgg
2401 tgaataaaat ctttttacat aaccaaaaag ctggtctaag gaaacacaaa
2451 atattaataa tggttatagt tcctatgcaa attatgagaa caactaacac
2501 tattattata tacactgact taatataagt atcagaacaa tgatagtttt
2551 taatcttcat tatagaatcc attttgtcat aaacaacaca tacatcacta
2601 gccgtacagg aaacactttg acaccctgta gaatcacata catttatctt
2651 atcatcatat gttggcaaca cgatcttacc acatgatggc atggtaaact
2701 cttgctcttt gactaccact ttgcactcac tattcttata caccaaaact
2751 ccatctgtac aaagaggttt aatagtcagt cccacctgtt tatggataat
2801 tgattcagac tctacttccg atggacagta agtggtgttt actacgtaca
2851 ctaatccata aaatccatcc ttaagtctag cataagtaac caattctgcg
2901 ttaatagtat ttatttgaag agtaaaagct ttatttttca cttgcttgaa
2951 ccctatgatt gatatatcgt ataaaggttc atctttgcat ctcttgtatc
3001 taatgcctcc aaataaggag aattggtagt gaggaactaa ttctttgtta
3051 tacttaccag aataacacgt ttcagataag ttaattgaag cttgattatg
3101 acaaatctct ccttcctcta tgtagaatcc agtcaattta taattgcctc
3151 tacatggtgg tgctgttgca tagcaagata ctttcacaac tgactttatt
3201 ggttcatatc tatctctcat ccaagtgtct tccaccactt tccctatcac
3251 agatgagagt gataaactac acaatgtggc gtagatgaag aaaatgttga
3301 aacgcattgt aataacaata ttacccagac tttgtgt