Sequence of DPV Sorghum mosaic virus
Sorghum mosaic virus strain M polyprotein mRNA, partial cds.
ACC No: U57360
Dated: 2006-11-14 | Length: 2053 | CRC: 249179188
ID U57360; SV 1; linear; mRNA; STD; VRL; 2053 BP.
XX
AC U57360;
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DT 06-FEB-1997 (Rel. 50, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 4)
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DE Sorghum mosaic virus strain M polyprotein mRNA, partial cds.
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KW .
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OS Sorghum mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-2053
RA Mirkov T.E., Yang Z.N.;
RT "Sequence and relationships of Sugarcane Mosaic and Sorghum Mosaic Virus
RT strains, and development of RT-PCR based RFLPs for strain discrimination";
RL Phytopathology 87:932-939(1997).
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RN [2]
RP 1-2053
RA Mirkov T.E.;
RT ;
RL Submitted (02-MAY-1996) to the EMBL/GenBank/DDBJ databases.
RL T. Erik Mirkov, Plant Pathology, Texas A&M, 2415 E. Hwy 83, Weslaco, TX
RL 78596, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2053
FT /organism="Sorghum mosaic virus"
FT /strain="M"
FT /mol_type="mRNA"
FT /db_xref="taxon:32619"
FT mat_peptide <1. .828
FT /product="nuclear inclusion II protein"
FT CDS <1. .1818
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:P89210"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR005121"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:P89210"
FT /protein_id="AAB70864.1"
FT /translation="CDADGSQFDSSLTPYLINAVLDIRLHFMEDWSIGEKMLRNLYTEI
FT VYTPIATPDGSVIKKFKGNNSGQPSTVVDNTLMVIIAFNYTMFSCGIEADMIDEICKMY
FT ANGDDLLLAIRPDYEHLLDNFSKHFADLGLNFDFTSRTRDRTELWFMSTRGIKIDNMYI
FT PKLEQERIVAILEWDRSLLPQYRLEAICAAMVESWGYPQLLHEIRKFYAWILEMQPFAT
FT LAKEGLAPYIAETALRNLYTGEGIKEGELDVYYTQFLKDLPEYIEDELIDVRHQAGGGT
FT VDAGAATAEATAQAQRDAAAKAQRDADAKKKADDEAAERQRQEAAAKKKADDDAKAKAD
FT ADAKAKSDADAKKKADDEAARKAQNQKDKDVDVGTSGTVAVPKLKAMSKKMKLPQAKGK
FT NILHLDFLLGYKPQQQDISNTRATRDEFDRWYDALQKEYELDDTQMTVVASGLMVWVIE
FT NGCSPNINGVWTMMDGDEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERY
FT MPRYGLQRNLTDYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNV
FT GESQENTERHTAGDVSRNMHSLLGVQQHH"
FT variation 9
FT /replace="a"
FT /note="nucleotide difference between two independent clones
FT for this strain"
FT variation 264
FT /replace="g"
FT /note="nucleotide difference between two independent clones
FT for this strain; results in amino acid change from F to L"
FT mat_peptide 829. .1815
FT /product="coat protein"
FT 3'UTR 1819. .2053
XX
SQ Sequence 2053 BP; 681 A; 385 C; 491 G; 496 T; 0 other;
u57360 Length: 2053 14-NOV-2006 Type: N Check: 3345 ..
1 tgtgatgccg atggttcgca attcgatagt tcactaacac cttatctcat
51 caatgcagtg ttggacatca gattgcattt tatggaagat tggagtatcg
101 gagagaaaat gctcaggaac ctttatacag aaattgttta tactcctata
151 gcaacaccag atggatccgt cataaagaaa ttcaaaggaa ataatagcgg
201 acaaccatca accgtcgttg ataacacact aatggtgatc atagcgttta
251 actatacaat gttttcatgt gggatcgaag ctgatatgat agatgaaata
301 tgcaaaatgt atgcaaatgg ggacgatctt ttgttagcaa tacggccaga
351 ttacgaacat ttattggata atttctcaaa acactttgct gatctaggtc
401 ttaacttcga ttttacatca cgcacaagag ataggacgga attgtggttt
451 atgtcgacac gaggcattaa aattgacaat atgtacatcc caaaattgga
501 acaggaaaga atcgttgcta ttttagaatg ggatagatca ttattaccac
551 aatatagact ggaggcgata tgtgctgcaa tggtggaatc atggggatat
601 ccacaattat tacatgagat taggaaattt tatgcttgga ttctcgaaat
651 gcagccattc gccactctag cgaaagaagg acttgccccg tacatagcag
701 aaacggcttt gcgtaatctt tatacagggg aaggaataaa agaaggggag
751 ttggatgttt attacacaca attcctcaaa gatttgcctg aatacataga
801 ggatgaacta attgacgtgc gccatcaggc aggaggcggt acagtagatg
851 caggagcagc cacagcagaa gcaacagcac aagcacagcg tgatgcagca
901 gcgaaagctc aacgagatgc tgatgcaaag aagaaggcgg atgatgaagc
951 ggcagagagg cagagacaag aagccgcggc aaagaagaaa gctgatgatg
1001 atgcaaaagc taaagctgat gcggatgcta aagcaaaatc agatgctgat
1051 gcgaaaaaga aagcagacga cgaagcagca agaaaagcac aaaatcaaaa
1101 agacaaggat gtggatgttg gcacatctgg cacggtggca gtgcctaagc
1151 tcaaagcaat gtccaagaaa atgaaattac cacaagcaaa agggaaaaac
1201 attttacact tggattttct tttgggatat aagccacaac aacaagacat
1251 ttcaaacacc agagccacac gggatgagtt cgataggtgg tatgatgcat
1301 tgcagaagga atatgaacta gatgatacgc agatgacagt agtcgcaagc
1351 ggactcatgg tttgggtcat agagaacgga tgctcaccca atattaatgg
1401 tgtttggaca atgatggatg gagatgagca aaggaaattt ccactcaagc
1451 ccgttattga atatgcatct ccaacattca gacagataat gcaccacttt
1501 agtgatgcag ctgaagcgta catagagtat cggaactcga cagagcgtta
1551 catgccaaga tacggacttc agcgaaactt aaccgactat aacctagccc
1601 gatacgcatt cgatttctat gaaataactt cgcgtacacc agcgagagct
1651 agagaggccc acatgcagat gaaagcagca gcagtgcgtg gatcaaacac
1701 gcgcatgttt ggcttggatg ggaatgtcgg tgagagtcag gagaatacag
1751 aacgtcacac agctggtgat gtgagtcgca atatgcactc ccttcttgga
1801 gtgcaacagc atcactgatg tactgagatc ttcattgcag ttttaagagt
1851 attttatata tttactattt cagtgagggt ctccctcctt agtattatat
1901 atgtacttta gaaatagtag tcattctgca ggggagtgag gtttacctcc
1951 aaccctatgg ttactatttc ctactagcgt cgaactacat tacggacacc
2001 ctgttgtgtg gttctaccac gagtcaggag ctgcgagtat tgtagcaaga
2051 gac