Sequence of DPV Cassava vein mosaic virus
Cassava vein mosaic virus, complete genome.
ACC No: U59751
Dated: 2005-04-18 | Length: 8159 | CRC: 673505162
!!NA_SEQUENCE 1.0
ID CV59751 standard; genomic DNA; VRL; 8159 BP.
XX
AC U59751;
XX
SV U59751.1
XX
DT 02-JUL-1996 (Rel. 48, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE Cassava vein mosaic virus, complete genome.
XX
KW .
XX
OS Cassava vein mosaic virus
OC Viruses; Retroid viruses; Caulimoviridae; Cavemovirus.
XX
RN [1]
RP 1-8159
RX DOI; 10.1007/s007050050344.
RX MEDLINE; 98309070.
RX PUBMED; 9645200.
RA de Kochko A., Verdaguer B., Taylor N., Carcamo R., Beachy R.N., Fauquet C.;
RT "Cassava vein mosaic virus (CsVMV), type species for a new genus of plant
RT double stranded DNA viruses?";
RL Arch. Virol. 143(5):945-962(1998).
XX
RN [2]
RP 1-8159
RA Kochko de A., Verdaguer B., Beachy R.N., Fauquet C.;
RT ;
RL Submitted (02-JUN-1996) to the EMBL/GenBank/DDBJ databases.
RL Cell Biology, ORSTOM/The Scripps Research Institute, 10666 N. Torrey Pines
RL Rd., La Jolla, CA 92037, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .8159
FT /db_xref="taxon:38062"
FT /mol_type="genomic DNA"
FT /note="double stranded DNA plant pararetrovirus that was
FT originally considered to be a caulimovirus"
FT /organism="Cassava vein mosaic virus"
FT CDS 30. .4148
FT /codon_start=1
FT /db_xref="GOA:Q66283"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001969"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/TrEMBL:Q66283"
FT /note="polyprotein; MW 163745.30 Daltons; contains the coat
FT protein and the movement protein consensus sequences at the
FT C terminus. Unknown function(s) at the N terminus."
FT /product="ORF 1"
FT /protein_id="AAB03325.1"
FT /translation="MDSKDFTQLNLEEHSYKVNREKLPIDSYIQYGGFTYANFTPYIIH
FT GDDGFGEHKQLNWTNKLLWNKLGKLNIKDTQILMQNNISEEQHNELISLEAQKIARENL
FT ADRINYLQNINTSIDFKLWKMNKENLERQELLLRQINELKEEIKSLKNIPSTVAIIPTN
FT TYTINMIRTETEDWKYFKYIEKELVQNKTEAIAKILDNSYIINDNLGLLYERYEEINPT
FT PKPYKRPETIFDTPQYAKYIRNQKRQEEYEKQQELKKENENKEYQEFLEWKEKQQKDKG
FT KGIQTVYPTLIIPDIKPEKQKKEDMMLEMIKNLQNELEQLKIQRHKEHEKQAELTKIQM
FT LEEELEEELDPDNLEKEVLNNIQNIQISSDISESSEINEISDNETEQISGSDSDYNNEQ
FT INVKIEGEEYEYKDNYRYYKPQPPYYKKDIRRERQYKGQSSQRADYIKNRREQFESTYQ
FT ANMNTTINDSGEILNLDCTTPEEAEDRIQKWTQSMSIALVKQQLSNEQAKQFIRRTFIG
FT NVKEWYKNLTNEAKQKLEGNAPLLSLTHMELGLRAEFGKLGIESDVEKHEKKTSIARHK
FT ILQLQICSMDHQNLNAYLCEFQEYYYSANYTEAESENILNMFYSKLPEPWGQQVLNGYL
FT SEIKGKNLLDSIGARMTYLQEFISDKCKENWTQKQARKIQLSKNLDCSYYEVGKYGCKQ
FT IRPHKRKRYYKKYIPIKRKYFNKKRYKKYYRPKKFLKRKNPHKACKCYNCGEEGHISPN
FT CKKPKKKTRINNLEALEFKNTEMENLEFETNKNDIIWVEEIEVIQPLHYEEEEKYKGNY
FT SDRILQNPYYINSISIEELDNLDWEFEYQEDIEDDLEYQNFVYQESNDNWYSDQENWYS
FT DEQYLGIYMFIGETSGENNQDNMEGIIKEYNKTEPEKINKIIFTSEKFKQIMENDLNMT
FT KDKIFHNNKLKKLFGKKEIEYYIVTDIEHPIDVKYVQNQDKIINLPLYNQEIFENEIQK
FT IPDKDQNKIRNIHLAAVEIVVKAYFREGIDTPFEIILCDDRITYPQEGSLVEVLIGNLI
FT YQKVKFTKIINYSISIEDKNLDKSLVMYWNLEGIKMIKDSKIFSIRLRNLYVLSNKHIV
FT KNKKQYNGNIIIEPIFQDVIQNNNRNYIEYGKPGKFDRTKLKSYSRRFNEPLRLDDRTN
FT IQREKDQIEKADHNLELQKELNNLNYYSQQGQSSNVLDIPKILKIENTKNNYKQFHIIG
FT KITEGRLNKFYPILIDTGAADSYISSKILEDEKLVSNKLSKVVTSYNADNEKHIYDRNT
FT EVIIELIDKNNEKYKINFIGLVDQLRLLEGGKAEILLGMNILQNLKPYCITDDYLEINL
FT GFRCIKINRIKKDIFEIREDLQQMNVLNE"
FT CDS 4132. .4347
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q89635"
FT /note="MW 8797.30 Daltons"
FT /function="unknown"
FT /product="ORF 2"
FT /protein_id="AAB03326.1"
FT /translation="MSLMNSTNPEFIEYYHTSWKPHKIELVDNIYHSYGYYVYTRSVIK
FT RFNKHLIKTTYKRIFSHPENIVLHFR"
FT CDS 4344. .6302
FT /codon_start=1
FT /db_xref="GOA:Q89703"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="UniProt/TrEMBL:Q89703"
FT /note="MW 77063.30 Daltons; polyprotein, contains an
FT aspartic proteinase and reverse transcriptase (with
FT ribonuclease H domain) consensus"
FT /product="ORF 3"
FT /protein_id="AAB03327.1"
FT /translation="MNKITYMTIKISIPKYMSRIYHGLFDTGANICICKKKVLPDELWH
FT KTENLVLRGFNDEKHVAEYRADNITIMIAKEKFIIPYIYAMDEMSPDIIIGATFYNKYS
FT PIELDIGKGIIKFTKNNEKYPNYLVKYPKKRKLVPWTKGNPSVTETMENIGINQIESRN
FT PIEEEINQILGTDIYGENPLEKWEKHKTLAKIELKNETDNIYKPPMLYQETDLPEFKMH
FT IEEMIKEGFIEEKTNFEDKKYSSPAFIVNKHSEQKRGKTRMVIDYKDLNKKAKVVKYPI
FT PNKDTLIHRSIQARYYSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYQWKVLPFGYHNS
FT PSIFQQFMDRIFRPYYDFIIVYIDDILVFSKTIEEHKIHIAKFRDITLANGLIISKKKT
FT ELCKEKIDFLGVQIEQGGIELQPHIINKILEKHTKIKNKTELQSILGLLNQIRHFIPHL
FT AQILLPIQKKLKIKDEEIWTWTKEDEEKIKLIQDYSKNLVIKMKYPINKEDMNWIIEVD
FT ASNNAYGSCLKYKPKNSKIEYLCRYNSGTFKENEQKYDINRKELIAVYQGLQSYSLFTC
FT EGNKLVRTDNSQVYYWIKNDTNKKSIEFRNIKYLLAKIAVYNFEIQLIDGKTNIIADYL
FT SRYNSSDTDGRYDEANT"
FT CDS 6274. .7452
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q66284"
FT /note="MW 46297.90 Daltons; putative transactivator factor
FT (TAV)"
FT /product="ORF 4"
FT /protein_id="AAB03328.1"
FT /translation="MEDMMKQILEKLNTIEKNISETNIRIEKIEKEQELKRKVELYGKE
FT PEKKLHKENIEKLSSSIEDKIIQNIDKKLKKIENVEEQYQWKNIVKINKPLSVGEKYME
FT NFKKILVYLGEKHPKLEELYSLTDYNKLVADIYTDRNLVISAYNYGLLQVLYIEHPSQL
FT ELFDENIKLAYMKFRNVTKAQLIYMRIYSAMAEPYDKGVIPKIEIIKFGITYSKLKYDE
FT VYEHQPIEKLDLKKFISQKRALGILVIQKEIENLNGNVWLYSNLDGRLILSNHNKAENV
FT EVKNILSDWSKKLSIPEGNYPRCSIKNPMFTGKTMEVLCELSKKQINMRHICNLCSKMK
FT NVQIQDPILPEYEEEYVEIEKEEPGEEKNLEDVSTDDNNEKKKIRSVIVKET"
FT CDS 7973. .8137
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q66285"
FT /note="putative ORF; MW 6293.50 Daltons; putative role in
FT transcription regulation"
FT /function="unknown"
FT /product="ORF 5"
FT /protein_id="AAB03329.1"
FT /translation="MKGIKCLSITCFLSDNSIIRVVLIRRMLKILLFSLLVLIILCFID
FT PILFYFICL"
XX
SQ Sequence 8159 BP; 3804 A; 826 C; 1208 G; 2321 T; 0 other;
U59751 Length: 8159 May 10, 2005 10:09 Type: N Check: 6093 ..
1 tggtatcaga gcttagttta aaaataataa tggatagtaa agattttaca
51 caacttaatc tagaagaaca tagttataaa gttaatagag aaaaattacc
101 tatagactca tatattcagt atggaggatt tacttatgca aattttacac
151 catatattat acatggagat gatggatttg gagaacataa acaactgaat
201 tggactaata aattattatg gaataaatta ggtaaattaa atatcaaaga
251 tacacaaatt ctaatgcaga ataatattag tgaagaacaa cataatgaat
301 taataagctt agaagcacaa aaaatagcta gagaaaattt agctgataga
351 attaattatt tacaaaatat taatacttca atagatttta agttatggaa
401 aatgaataaa gaaaatttag aaaggcaaga attattatta agacaaataa
451 atgaattaaa agaagaaata aaatcattaa aaaatatacc aagtacagta
501 gcaataatac caactaatac ttatactatt aatatgatta ggacagaaac
551 agaagattgg aaatatttta aatatattga aaaagaatta gttcagaata
601 aaactgaagc aatagcaaaa atattagata atagttatat aataaatgat
651 aatttaggat tattatatga aagatatgaa gaaattaatc ccacacctaa
701 accatataaa agaccagaaa ctatatttga tacacctcaa tatgcaaaat
751 atattaggaa tcaaaaaaga caagaagagt atgaaaaaca acaagaatta
801 aaaaaggaaa atgaaaataa agaataccaa gaatttttag aatggaaaga
851 aaaacaacaa aaagataaag gtaaaggaat acaaactgta tacccgacat
901 taataatacc agatataaaa cctgaaaaac aaaagaaaga agatatgatg
951 ttagaaatga ttaaaaattt acaaaatgaa ttagaacaat taaaaattca
1001 aagacataaa gaacacgaaa aacaagcaga gttaactaaa atacagatgt
1051 tagaagagga attagaagaa gaattagatc ctgataatct agaaaaagaa
1101 gttttaaata acattcaaaa tatacaaatc agtagtgata taagtgaatc
1151 atcagagata aatgaaattt cagataacga aacagaacaa atttcaggaa
1201 gtgatagtga ttataataat gaacaaatta atgttaagat agaaggagaa
1251 gaatatgaat acaaagacaa ttatagatat tataaaccac aaccaccata
1301 ttacaaaaaa gatataagaa gagaaaggca atataaaggt caaagttcac
1351 aaagagcaga ttacataaaa aacagaagag aacaatttga atctacatat
1401 caagcaaata tgaatacaac cataaacgat agtggagaaa ttcttaattt
1451 agattgcaca acaccagagg aagcagaaga tagaatacaa aaatggactc
1501 aatctatgtc aatagcatta gttaaacaac aattatctaa tgaacaagca
1551 aaacaattca taagaagaac ttttatagga aatgtaaaag aatggtataa
1601 aaatttaaca aatgaagcta aacaaaaatt agaagggaat gcaccattac
1651 taagtttaac tcatatggaa ttaggactta gagcagaatt tggaaaatta
1701 ggaatagaat cagatgtaga aaaacatgaa aagaaaacat ctattgcaag
1751 acataaaata ttacaattac aaatatgtag tatggatcat caaaacttaa
1801 atgcatattt atgtgaattt caagaatatt attatagtgc aaattataca
1851 gaagcagaat cagaaaatat attaaatatg ttttatagta aactcccaga
1901 accatgggga caacaagtat taaatggata tttatcagaa ataaaaggta
1951 aaaatttact agatagtatt ggagctcgaa tgacatattt acaagaattt
2001 atatcagata aatgtaaaga aaactggaca caaaaacaag ctagaaaaat
2051 acaattatca aagaatctag attgtagcta ttatgaagta ggaaaatatg
2101 gatgtaaaca aataagacct cataagagaa aaagatatta taaaaaatat
2151 attcctataa aaaggaaata ttttaataag aaaagataca aaaaatatta
2201 tagacctaaa aaattcttaa aaaggaaaaa tccgcataaa gcatgtaaat
2251 gttataattg tggagaagaa ggacacataa gtccaaattg taaaaaacca
2301 aaaaagaaaa ctagaattaa taatttagaa gctttagaat ttaaaaatac
2351 tgagatggag aatctagaat ttgaaacaaa taaaaatgat ataatatggg
2401 tagaagaaat agaagttata caacctttac attatgaaga agaagaaaaa
2451 tacaaaggaa attactcaga tagaatatta caaaatcctt attatataaa
2501 ttcaataagt attgaagaat tagataattt agattgggaa tttgaatatc
2551 aagaagatat tgaagatgat ttagaatacc aaaattttgt atatcaagaa
2601 tcaaatgata attggtatag tgatcaagaa aattggtata gtgatgaaca
2651 atatttagga atatatatgt ttataggaga aacatcagga gaaaataatc
2701 aagacaatat ggaaggaata ataaaagaat ataataaaac agaaccagaa
2751 aaaataaata aaataatatt tacctcagaa aaatttaaac aaattatgga
2801 aaatgattta aatatgacga aagataaaat atttcataat aataaactta
2851 aaaaattatt tggaaagaaa gaaatagaat actatatagt tacagatatc
2901 gaacatccta ttgatgtaaa atatgtacaa aatcaagata aaataataaa
2951 cctaccatta tataatcaag aaatttttga aaatgaaata caaaaaatac
3001 ctgacaagga tcaaaataaa ataagaaata tacatttagc agcagtagaa
3051 attgtagtaa aagcatattt tagagaagga atagacacac catttgaaat
3101 tatattatgc gatgatagaa taacatatcc acaagaggga agtttagtag
3151 aagttttaat aggaaattta atatatcaga aagtaaaatt tacaaaaata
3201 attaattatt ctataagcat agaagataaa aatttagata aaagtttagt
3251 aatgtattgg aacttagaag gaattaaaat gataaaagat agcaaaatat
3301 ttagtataag attaagaaat ctttatgttt taagtaataa acatatagtg
3351 aaaaataaaa aacaatataa tggaaatata attattgaac ctatatttca
3401 agatgtaata caaaataata atagaaatta tatagaatat ggtaaaccag
3451 gaaaatttga tagaacaaaa ttaaaatcat atagtagaag atttaatgaa
3501 ccgttaagac ttgatgatag aacaaatatc cagagagaaa aggaccaaat
3551 cgaaaaggca gaccataatt tagaattaca aaaagaacta aataatttaa
3601 attattattc tcaacaagga caaagttcta atgttttaga tataccaaaa
3651 atattaaaga tagagaacac taagaataat tataagcaat ttcatattat
3701 tggaaaaatt actgaaggaa gattaaataa attttatccg atattaatag
3751 atacaggagc agcagattca tatataagtt caaagatctt agaagatgag
3801 aaattagttt caaataaatt atctaaagta gttacatcat ataacgcaga
3851 taatgaaaaa catatttatg acagaaacac agaagtaata attgaattaa
3901 tagataaaaa taatgaaaaa tataaaatca attttatcgg attagtagat
3951 caattaagac ttttagaagg aggaaaagct gaaatattat taggaatgaa
4001 catattacaa aatttaaaac cctattgtat aacagatgat tacctagaaa
4051 ttaatttagg ctttagatgt ataaaaatta atagaataaa gaaagatatt
4101 ttcgaaatta gagaagattt acaacaaatg aatgtcctta atgaatagta
4151 caaatccaga atttatagaa tattatcata cttcatggaa accacataaa
4201 atagaattag ttgataatat atatcattca tatggatatt atgtgtatac
4251 aagaagtgta ataaaaagat ttaataaaca tttaattaaa actacatata
4301 aaagaatatt tagtcatcca gaaaatatag tattgcattt tagatgaata
4351 agattaccta tatgacaatc aaaatatcaa tacctaaata tatgtcaaga
4401 atttatcatg gattgtttga tactggagca aatatatgta tttgtaaaaa
4451 gaaagtttta ccagatgaat tatggcataa gacagaaaat ttagtactaa
4501 gaggatttaa tgatgaaaag catgttgctg aatatagagc agataatata
4551 acaataatga tagcaaaaga aaaatttata atcccatata tatatgctat
4601 ggatgaaatg tcaccagata ttattattgg agcaactttt tataataaat
4651 atagtcccat agaactagac ataggaaaag gaattataaa atttacaaaa
4701 aataatgaaa aatacccaaa ttatttagta aaatatccta agaagagaaa
4751 attagtacca tggactaaag gaaacccgag tgttactgaa acaatggaaa
4801 atataggaat aaatcagatt gaaagtagaa atcctataga agaagaaata
4851 aatcaaatat taggaacaga tatatatggc gaaaatccat tagaaaaatg
4901 ggaaaaacat aaaacattag caaaaataga attaaaaaat gaaacagata
4951 atatttataa accaccaatg ttatatcaag aaacagattt accagaattt
5001 aaaatgcata tagaagaaat gattaaagaa ggttttatag aagaaaaaac
5051 taattttgaa gataaaaaat attctagccc agcttttata gtaaataaac
5101 attcagaaca aaaaagagga aaaactagaa tggtaattga ttataaagat
5151 ttaaataaaa aagctaaagt agtaaaatat cctatcccaa ataaagatac
5201 attaatacat agaagtatac aggcaagata ctatagtaaa tttgattgta
5251 aatcaggatt ttatcatata aagttagaag aagatagtaa aaaatataca
5301 gcttttacag ttccgcaggg atattatcag tggaaagtat taccatttgg
5351 atatcataac tcaccaagta ttttccaaca atttatggat agaatattta
5401 gaccatatta tgattttatt attgtgtata ttgatgatat attagtcttt
5451 tctaagacta ttgaagagca taaaatacat attgcaaaat ttagagatat
5501 aacacttgca aatggattaa ttattagtaa gaaaaaaaca gaattatgta
5551 aagaaaaaat agatttcctt ggagtccaaa tagaacaagg aggtatagaa
5601 ttacagcctc atattattaa taaaatatta gaaaaacata cgaaaataaa
5651 aaataaaact gaattacaaa gtatattagg attattaaac cagattagac
5701 attttatacc acatttagca cagattttat tacctataca gaaaaaatta
5751 aaaataaaag atgaagagat ttggacttgg actaaagaag atgaagaaaa
5801 aataaaactt atacaagatt atagtaaaaa tttagtaata aaaatgaaat
5851 atcctattaa taaagaagat atgaattgga ttattgaagt agacgcaagt
5901 aataatgctt atggtagttg tttaaaatat aaaccgaaaa actcaaaaat
5951 agaatattta tgtagatata actcaggaac ttttaaagaa aatgagcaaa
6001 aatatgatat taatagaaaa gaactgattg cagtatacca aggattgcag
6051 agttattctt tatttacatg tgaaggaaat aaattagtta gaacagataa
6101 ttcacaagta tattattgga taaaaaatga tactaataaa aaatcaattg
6151 aatttagaaa tataaaatat ttattagcta aaattgcagt ctataatttc
6201 gaaattcaac taatagatgg aaaaacaaat attattgctg attatttgag
6251 caggtacaat tcatctgata ctgatggaag atatgatgaa gcaaatactt
6301 gagaaactca atacaattga aaaaaatatt tctgaaacaa atatacgaat
6351 tgaaaaaata gaaaaagaac aagagcttaa aagaaaagta gagctctatg
6401 gaaaagaacc agagaaaaaa ttacataaag aaaatataga aaaattaagc
6451 tcttctattg aagacaaaat catacaaaat attgataaga aattaaagaa
6501 aattgaaaat gtcgaagaac aatatcagtg gaaaaatata gtcaaaataa
6551 ataaaccact ttctgtggga gaaaaatata tggagaattt caaaaagata
6601 cttgtttatc ttggagaaaa acatcctaaa ttggaagaat tatattcttt
6651 gacagattac aacaaattag tagcagatat ttatactgat agaaatttag
6701 taatttcagc atataattat ggattacttc aagtgcttta tattgagcat
6751 ccgtctcaat tagagttatt tgatgaaaat ataaaacttg cttatatgaa
6801 atttagaaat gttaccaagg cacaacttat atatatgcga atttacagtg
6851 caatggctga accctatgat aaaggggtga ttccaaaaat tgaaataatt
6901 aaatttggaa ttacttattc aaaacttaaa tatgatgaag tatatgaaca
6951 tcaaccaata gaaaaacttg atttgaaaaa atttatatca caaaaaagag
7001 cattagggat acttgttatc caaaaagaaa tagaaaactt gaatggaaac
7051 gtatggttgt actccaacct agatggaaga cttatattat caaatcacaa
7101 caaagcagaa aatgtagaag tcaaaaatat attatcagat tggtcaaaaa
7151 aattatccat tccagaaggt aattatccaa gatgtagcat caagaatcca
7201 atgtttacgg gaaaaactat ggaagtatta tgtgagctca gcaagaagca
7251 gatcaatatg cggcacatat gcaacctatg ttcaaaaatg aagaatgtac
7301 agatacaaga tcctatactg ccagaatacg aagaagaata cgtagaaatt
7351 gaaaaagaag aaccaggcga agaaaagaat cttgaagacg taagcactga
7401 cgacaacaat gaaaagaaga agataaggtc ggtgattgtg aaagagacat
7451 agaggacaca tgtaaggtgg aaaatgtaag ggcggaaagt aaccttatca
7501 caaaggaatc ttatccccca ctacttatcc ttttatattt ttccgtgtca
7551 tttttgccct tgagttttcc tatataagga accaagttcg gcatttgtga
7601 aaacaagaaa aaatttggtg taagctattt tctttgaagt actgaggata
7651 caacttcaga gaaatttgta agtttgtaat gtttttagtt tttataataa
7701 tatgtttatg tttgttttaa taatgagtga gtagtttctt aattcttcta
7751 attaatatga aataattatg ctgtctagaa acaagtttaa atctgtttga
7801 tattcccaga agctatgaac tgttacgatc tagataatct ttcaattatc
7851 cccatgatat cctgcgtgtg atattactga gccctttata gaccatgtgt
7901 gtcgtttgta tgggcatgaa catctgtgta tgttagggag aaagagagat
7951 tgaatgatca ttgaaagttt taatgaaggg aatcaaatgt ttatctatta
8001 cttgttttct atcagacaat agcataatta gagtagtatt aattaggaga
8051 atgttaaaaa tattattgtt ttcactctta gttttaatta tcctttgttt
8101 tatcgatcct atattatttt actttatttg tttataattc cgctttcttt
8151 tcacccctt