Sequence of DPV Lassa virus
Lassa virus Z protein and L protein genes, complete cds.
ACC No: U73034
Dated: 1999-10-11 | Length: 7279 | CRC: -1058299878
!!NA_SEQUENCE 1.0
ID U73034 standard; RNA; VRL; 7279 BP.
XX
AC U73034;
XX
SV U73034.2
XX
DT 18-MAR-1998 (Rel. 55, Created)
DT 11-OCT-1999 (Rel. 61, Last updated, Version 2)
XX
DE Lassa virus Z protein and L protein genes, complete cds.
XX
KW .
XX
OS Lassa virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC 1-LCMV-LASV complex.
XX
RN [1]
RP 1-7279
RX MEDLINE; 97428590.
RA Djavani M., Lukashevich I.S., Sanchez A., Nichol S.T., Salvato M.S.;
RT "Completion of the Lassa fever virus sequence and identification of a RING
RT finger open reading frame at the L RNA 5' End";
RL Virology 235(2):414-418(1997).
XX
RN [2]
RP 1-7279
RA Djavani M., Lukashevich I., Sanchez A., Nichol S.T., Salvato M.S.;
RT ;
RL Submitted (01-OCT-1996) to the EMBL/GenBank/DDBJ databases.
RL Pathology and Laboratory Medicine, University of Wisconsin-Madison, 1300
RL University Ave, 512 SMI, Madison, WI 53706, USA
XX
RN [3]
RC Sequence update by submitter
RP 1-7279
RA Djavani M.;
RT ;
RL Submitted (08-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Wisconsin, 1300 University Ave., SMI, Rm.#512,
RL Madison, WI 53706, USA
XX
DR SPTREMBL; O09705; O09705.
DR SPTREMBL; O73557; O73557.
XX
CC On Oct 8, 1999 this sequence version replaced gi:2967632.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7279
FT /db_xref="taxon:11620"
FT /organism="Lassa virus"
FT CDS 66. .365
FT /codon_start=1
FT /db_xref="SPTREMBL:O73557"
FT /note="ring finger protein"
FT /product="Z protein"
FT /protein_id="AAC05816.2"
FT /translation="MGNKQAKAPESKDSPRASLIPDATHLGPQFCKSCWFENKGLVECN
FT NHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPTAPPTGAADSIRPPPYSP"
FT CDS complement(466. .7122)
FT /codon_start=1
FT /db_xref="SPTREMBL:O09705"
FT /note="L polymerase"
FT /product="L protein"
FT /protein_id="AAC05817.1"
FT /translation="MEEDIACVKDLVSKYLVDNERLSRQKLAFLVQTEPRMLLMEGLKL
FT LSLCIEVDSCNANGCEHNSEDKSVERILHDHGILTPSLCLWYPDGYKLTGNVLILLECF
FT VRSSPANFEQKYIEDFKKLEQLKEDLKSVDINLIPLIDGRTSFYNEQIPDWVNDKLRDT
FT LFSLLKYAQESNSLFEESEYSRLCESLFMTSGRLSGVESLNVLMDNRSNHYEEVIASCH
FT QGINNKLTAHEVKLQIEEEYQVFRNRLRKGEIEGQFLKVDKSQLLNELNNLYADKVVAE
FT DNIEHLIYQFKRASPILRFLYANVDEGNEKRGNQTIGECQVQCWRSFLNKVKSLRILNT
FT RRKLLLIFDALILLASKHDLMKQKCLKGWLGSCFLRVKDRLVSLEATKRDLEKWGERGN
FT RLRSRITQSSQCLSKNQILNSIFQKTILKATTALKDVGISVDHYKIDMEVICLNSYDLI
FT MDFDVSGVVPTISYQRTEEETFPYVMGDVELLGTTDLERLSSLSLALVNSMKTSSTVKL
FT RQNEFGPARYQVVRCKEAYCQEFSLGNTELQLIYQKTGECSKCYAINDNKVGEVCSFYA
FT DPKRYFPAIFSAEVLQTTISTMISWIEDCNELEGQLNNIRSLTKMILVLILAHPSKRSQ
FT KLLQNLRYFVMAYLSDYHHKDLIDKIREELITDVEFLLYRLIRTLMNLVLSEDVKSMMT
FT NRFKFILNVSYMCHFITKETPDRLTDQIKCFEKFLEPKVRFGHVSTNPADTATEEELDD
FT MVYNAKKFLSKDGCTTIEGPDYKRPGVSKKYLSLLTSSFNNGSLFKEREVKREIKDPLI
FT TSGSAALDLASKKSVVVNKYTDGSRILNYDFNKLTALAVSQLTEVFSRKGKYLLNKQDY
FT EYKVQQAMSNLVLGSGQLKSDADGADLDEILLDGGASDYFDQLKETVEKIVDQYREPVK
FT LGSGPNGDGQPSINDLDEIVSNKFYIRLIKGELSNHMVEEFDHDILPGKFYEEFCNAVY
FT ENSRLKQKYFYCGHMSQCPIGELTKAVSTRTYFNHEYFQCFKSILLIMNANTLMGRYTH
FT YKSRNLNFKFDMGKLSDDVRISERESNSEALSKALSLTNCTTAMLKNLCFYSQESPQSY
FT DSVGPDTGRLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEAISLQLSGSCLNNE
FT KEFENAILSMKLNVSLAHVSYSMDHSKWGPMMCPFLFLTVLQNLIFLSKDLQADIKGRD
FT YLSTLLMWHMHKMVEIPFNVVTAMMKSFIKAQLGLRKKTKQSITEDFFYSNFQAGVVPS
FT HISSILDMGQGILHNTSDFYALISERFINYAISCICGGTIDAYTSSDDQISLFDQSLTE
FT LLQRDPEEFRTLIEFHYYMSDQLNKFVSPKSVIGRFVAEFKSRFFVWGDEVPLLTKFVA
FT AALHNIKCKEPHQLAETIDTIIDQSVANGVPVHLCNLIQKRTLNPLQYARYPIDPFLLN
FT CETDVRDWVDGNRSYRIMRQIEGLIPNACSKIRSMLRKLYNRLKTGQLHEEFTTNYLSS
FT EHLSSLRNLCELLDVEPPSESDLEYSWLNLAAHHPLRMVLRQKIIYSGAVNLDDEKIPT
FT IVKTIQNKLSSTFTRGAQKLLSEAINKSAFQSSIASGFVGLCRTLGSKCVRGPNKENLY
FT IKSIQSLISDVKGIKLLTNSNGIQYWQVPLELRNGSGGESVVSYFRPLLWDYMCISLST
FT AIELGAWVLGEPKTVKVFDFFKHNPCDYFPLKPTASKLLEDRVGLNHIIHSLRRLYPSV
FT FEKHILPFMSDLASTKMKWSPRIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSS
FT ELRLSHSRTHEPMVEERVVSTSDAVDNFMRQIYFESYVRPFVATTRTLGSFTWFPHKTS
FT VPEGEGLHRMGPFSSFVEKVIHKGVERPMFKHDLMMGYAWIDFDIEPARFNQNQLIASG
FT LVDPKFDSLEDFFDAVASLPPGSAKLSQTVRFRVKSQDASFKESFAIHLEYTGSMNQQA
FT KYLVHDVTVMYSGAVSPCVLSDCWRLVLSGPTFKGKSAWYVDTEIINEFLIDTNQLGHV
FT TPVEIVVDMERLQFTEYDFVLVGPCTEPTPLVVHRGGLWECGKKLASFTPVIQDQDLEI
FT FVREVGDTSSDLLIGALSDMMIDRLGLRMQWSGVDIVSTLRAAAPSCEGILSAVLEAVD
FT NWVEFKGYALCYSKSRGKVMVQSSGGKLRLKGRTCEELTRKDECIEDIE"
XX
SQ Sequence 7279 BP; 2103 A; 1737 C; 1256 G; 2183 T; 0 other;
U73034 Length: 7279 September 18, 2002 10:52 Type: N Check: 93 ..
1 cgcaccgggg atcctaggca atttggttgt ctttttttga ggccttgtgc
51 gctgtacttc tccaaatggg aaacaagcaa gccaaagccc cagaatcaaa
101 agacagtccg agagccagcc tgatcccaga tgccacacat ctagggccac
151 agttctgtaa gagctgctgg ttcgaaaaca agggcctggt tgagtgcaac
201 aaccactatc tgtgtctcaa ctgcctcacc ttacttctaa gtgtcagcaa
251 caggtgtccc atttgcaaga tgcctctccc cacaaaactg agaccatcag
301 ccgctccaac agcacctcca accggagcag cggacagcat cagaccccca
351 ccctacagtc cctgaatctc ccaccgaccc ccaccactcc catcctcccc
401 ccgacacccc ccggggggac cccccgccgg gggccccccc gggggagcca
451 accatcacca aaaaactact caatgtcttc gatgcattca tccttcctag
501 tcagctcctc acatgttctg cccttcaatc tcaatttacc accacttgat
551 tgtaccatca cctttcccct tgacttacta taacagagag cataaccctt
601 gaactccacc cagttgtcca ctgcctcaag aaccgcactc aagatcccct
651 cacaactcgg cgctgcagcc ctaagtgtgg agacaatgtc cacccctgac
701 cactgcatcc ttaaccccag cctgtctatc atcatatcac tcaatgcccc
751 aatcagcagg tcagacgaag tgtccccaac ctctctcaca aatatctcaa
801 gatcctggtc ttgtataaca ggtgtaaagg atgccaattt ctttccacat
851 tcccacaagc ctcccctatg cacaaccagg ggggttggtt cagtgcaagg
901 acccaccaat acaaagtcat actccgtaaa ctgcaacctt tccatatcaa
951 caacaatctc aacaggggtc acatgcccta gttgatttgt gtcaattaaa
1001 aactcattaa tgatctcggt gtcaacatac catgctgatt tgcccttgaa
1051 agtaggtcct gacaaaacca gtctccaaca gtctgacaag acacacggac
1101 tcactgcacc tgagtacata acggttacat catgtactag atacttggcc
1151 tgttgattca ttgagccagt atactcaagg tggatggcaa agctttcctt
1201 aaaactagca tcttgacttt taacacggaa cctcactgtc tgactcagtt
1251 ttgcagaccc tggaggtagt gaagctacgg catcaaagaa atcctccaat
1301 gagtcaaact taggatcaac taaacctgat gcgatcaatt gattttgatt
1351 gaatctagct ggctcaatat caaagtctat ccaagcataa cccatcatca
1401 gatcatgctt aaacattggc ctttcaacac ctttgtgaat aactttctct
1451 acaaatgaag aaaatggacc cattctatgc aacccttcac cctctggaac
1501 tgatgtcttg tgtggaaacc acgtgaagga ccccaatgtt cttgtagtcg
1551 caacaaatgg tctcacgtaa gactcaaaat aaatttgcct catgaaattg
1601 tcaacagcat cactagtgct cactactctt tcttccacca tgggttcatg
1651 tgtcctactg tgagacaacc tcaattcaga tgataacaca atgtaatgtt
1701 cctctctttt ccattttact atgtgtgaga caagagacaa ggcttcacag
1751 ttaacatcca acgctacaca gagatctaga aattttattc tgggtgacca
1801 cttcattttg gttgacgcta gatcgctcat gaatggtaat atgtgtttct
1851 caaacactga tgggtacagc cttcttaaag aatgaatgat gtgattcaaa
1901 ccaaccctat cctccaatag ttttgatgca gttggcttta agggaaaata
1951 gtcacaaggg ttatgtttga aaaaatcaaa caccttaact gtcttaggtt
2001 cccctaagac ccatgcaccc agttctattg cagttgataa ggagatgcac
2051 atataatccc ataacaaggg tctgaaataa ctgaccacac tttcacctcc
2101 acttccattt ctaagttcta gcggaacttg ccaatattga atgccattag
2151 aatttgtcaa caatttgatt cccttgacat cagaaatcag agactgaatg
2201 gacttaatat acagattctc tttatttggt ccccgaacac atttgctacc
2251 caatgttctg cacaatccta caaagccaga tgcaatggaa ctttggaatg
2301 cagatttgtt gatagcttca gacagcaatt tttgcgcacc tcgagtgaaa
2351 gtggaagaca acttattttg gattgttttg acaatggtag gaatcttctc
2401 atcatctagg ttcacagcac ctgaatatat tatcttttgt ctcaacacca
2451 ttcttaaagg atgatgcgca gccaagttta gccaagaata ctcaaggtca
2501 gactcagatg ggggctcaac atccaacagc tcacaaagat ttcttagtga
2551 tgagaggtgc tcactagaca aatagtttgt tgtgaactct tcatggagtt
2601 gcccagtctt caacctattg tacagttttc ttaacataga tctaatcttg
2651 ctgcaagcat taggaatcaa tccctctatt tgcctcataa tcctataact
2701 acggttgcca tctacccagt ctctaacatc tgtctcgcaa ttcaataaga
2751 atgggtcaat agggtatctt gcatattgca aaggatttaa ggttcttttc
2801 tgtattagat tacataagtg aacagggaca ccattcgcaa ccgactgatc
2851 aatgattgtg tcaattgttt ctgccagttg gtgtggctct ttacacttta
2901 tattgtgaag agctgctgca acgaactttg tcaataatgg cacttcatct
2951 ccccaaacaa aaaatctaga tttaaactct gcaacaaacc tgccaatgac
3001 acttttaggg ctcacaaact tattgagttg atcactcata taatagtgga
3051 actctattag agtcctaaat tcttctgggt ctctttgcaa aagctctgtg
3101 agagattgat caaagagaga aatctgatca tcactagagg tataagcatc
3151 tatcgtacca ccgcatatac aactgatagc ataattaatg aacctctctg
3201 aaatgagggc ataaaaatct gatgtgttgt gtaatattcc ttgacccatg
3251 tcaagtattg aactgatgtg agaaggcact acaccagctt ggaaattaga
3301 gtaaaagaaa tcttctgtta ttgactgttt agttttcttc cttaacccta
3351 gttgggcttt aatgaaagac ttcatcatgg ctgtcaccac attaaaaggt
3401 atttccacca ttttgtgcat atgccacata agtagggttg agagatagtc
3451 cctccctttt atgtcagctt gcaagtcctt tgagaggaaa attaaattct
3501 gtaagacagt caagaacaaa aatggacaca tcattgggcc ccacttacta
3551 tgatccatgc tataagacac atgtgccaat gaaacattca atttcatgga
3601 aaggatagca ttttcaaatt ccttctcgtt gttcaggcaa ctccctgata
3651 actgtaggct tatagcttca aagtaatctt ctataagtct agtaaacatc
3701 tttgttctaa gatcaccaat atataattct ctgttaccac ccacttgttc
3751 tttatatgac aaagaaaact taagccttcc tgtatcaggt cccactgagt
3801 cataagattg tggcgactct tggctataaa aacacaaatt ctttaacatt
3851 gctgtggtac agtttgtcag tgacagagcc ttactaagtg cctctgaatt
3901 gctctccctt tcactaattc ttacatcatc agagagttta cccatatcaa
3951 acttgaaatt aaggttcctt gacttataat gagtgtacct ccccataagt
4001 gtattcgcat tcatgatcaa gagtatggac ttaaaacact gaaagtattc
4051 atggttaaag tatgtccttg ttgacactgc ctttgtcaac tctccaatag
4101 gacactgtga catatgtcca cagtaaaaat acttctgctt caatctacta
4151 ttctcataga cagcattaca gaattcttca taaaatttac ctggtaagat
4201 atcatgatca aactcctcaa ccatgtgatt ggataattca cccttgatca
4251 acctaatgta aaacttattt gagacaatct catctagatc atttattgat
4301 ggttggccat caccattagg gcctgagcct agcttgacag gttccctata
4351 ctgatcaaca attttttcaa cagtctcctt tagctgatca aaataatcgc
4401 ttgcacctcc atcgagcaaa atttcgtcta ggtcagcccc atcagcatca
4451 cttttgagct gcccagatcc tagaaccaaa ttgctcattg cctgctgaac
4501 tttgtactca tagtcctgct tgttgagaag gtactttcct ttccttgaga
4551 agacttcagt gagctgcgac acggccagtg ctgtgagctt attgaagtca
4601 tagtttaata ttctagaacc atctgtgtat ttattaacaa caacactttt
4651 cttgctggct aaatccaagg ctgcactgcc actggtgatg agaggatctt
4701 tgatttccct ttttacttcc ctctccttaa atagtgaacc attgttaaaa
4751 gaggatgtaa gaagagataa atacttcttt gaaacaccag gccttttata
4801 atctggtccc tcgatagttg tgcatccatc tttacttaaa aacttttttg
4851 cattgtagac catgtcatcc aattcttcct cagtggctgt gtctgcagga
4901 ttagtgctca catgaccaaa tctcaccttt ggttccagaa acttctcaaa
4951 acattttatc tgatctgtca atctatctgg tgtttctttc gtaatgaagt
5001 ggcacatgta ggaaacattc aaaatgaact tgaacctatt agtcatcatg
5051 ctcttcacat cctcagataa aaccagattc attaatgtcc ttattaacct
5101 atagagcagg aactcaacat cagtgattaa ttcttccctt attttgtcaa
5151 tgaggtcctt atgatgataa tctgatagat aagccattac aaagtaccta
5201 agattttgga ggagcttttg agaacgttta ctggggtgag ctaaaattaa
5251 aaccaggatc atctttgtca gagacctgat attgttcaac tgcccttcca
5301 gctcattgca atcttctatc caagaaatca tagtgcttat tgttgtttgt
5351 aaaacctcag ctgaaaatat tgctggaaaa tatcttttag gatcagcata
5401 aaatgagcac acctcaccaa ctttgttatc attaatagca tagcacttcg
5451 agcactcccc tgtcttttga taaatcagtt gtaattcagt gttacccaat
5501 gaaaactctt gacaatatgc ttctttgcat ctgaccactt gataccttgc
5551 gggtccaaat tcattctgtc tcagctttac ggtagaagaa gttttcatag
5601 agttcaccaa agcgaggctc aatgaggaaa gtctctctaa gtcagtggtt
5651 cccagtagtt ccacatcccc catcacataa gggaatgttt cttcctctgt
5701 tctctgataa ctgattgttg ggacaactcc ggagacatca aagtccataa
5751 tcaaatcata gctgttaagg cagatcacct ccatatcaat tttatagtgg
5801 tccacactga tcccaacatc ctttaaagca gtggtggcct tcaaaatggt
5851 tttctggaat attgaattga ggatttgatt cttactcaaa cactgggagg
5901 actgtgtgat tctagatctt agcctgttgc ctcgctctcc ccatttctcg
5951 agatccctct ttgttgcctc caaagaaact agtctatctt taactcttaa
6001 gaagcaagac cccaaccacc cttttaaaca cttttgtttc atcaggtcat
6051 gcttacttgc aaggagaatt agtgcatcaa aaattaatag aagtttcctc
6101 cttgtgttca atatcctcaa agattttact ttatttagga atgatctcca
6151 gcattgaacc tgacattctc caatagtttg gtttcccctt ttttcattcc
6201 cctcatcaac atttgcatac aaaaatctca atattggtga tgctctcttg
6251 aactggtaaa ttaagtgttc gatattgtct tctgcaacta ccttatcagc
6301 gtacaaattg ttaagctcat taagtaactg gctcttatca acctttaaaa
6351 actgaccttc tatctctcct ttcctcaatc tgttcctaaa cacttgatac
6401 tcctcttcga tctgcagctt tacctcatga gctgttaatt tattattgat
6451 gccctggtgg catgaggcaa tcacttcctc ataatgatta gagcgattgt
6501 ccatcagaac atttaaactc tccacccctg ataatctacc cgaagtcatg
6551 aataaagatt cacagagtct gctatactct gactcttcaa aaagtgaatt
6601 actctcctgt gcatacttta aaagtgagaa gagcgtatcc ctcaacttat
6651 cattgaccca gtcaggtatt tgttcattgt agaatgatgt tctcccgtct
6701 ataagtggta ttaaattgat gtcgacactc ttcaggtctt ctttcagctg
6751 ctctaatttt ttgaagtcct caatgtactt ctgctcaaag ttagcaggag
6801 atgatctaac aaaacactcc agcagtatta gaacattgcc cgtcagtttg
6851 taaccgtccg ggtaccacaa acatagtgaa ggtgtcaaga ttccatggtc
6901 atggagaatt ctttccacag atttgtcctc actgttatgc tcgcaaccat
6951 ttgcgttgca agaatcaacc tcaatacaga gggacaagag tttcaaccct
7001 tccattaata gcatcctagg ctctgtctgc acaagaaatg ctaacttctg
7051 tcttgacaat ctctcgttgt ccactaggta ttttgatact aagtctttga
7101 cacaggctat gtcttcctcc atgtttagct gcaggtatga tgttcagaac
7151 cctcagaaca tgtggtctgc tagagcaaca gttcgctatg ggatagggtc
7201 ccgtaggggc acagaagaca caagaggcaa ttaaagacaa ttaaataaga
7251 tagccttaat gcctaggatc ctcggtgcg