Sequence of DPV Tobacco streak virus
Tobacco streak virus putative viral replicase mRNA, complete cds.
ACC No: U80934
Dated: 2001-08-06 | Length: 3491 | CRC: -1429693395
!!NA_SEQUENCE 1.0
ID TSU80934 standard; RNA; VRL; 3491 BP.
XX
AC U80934;
XX
SV U80934.1
XX
DT 06-MAR-1997 (Rel. 51, Created)
DT 06-AUG-2001 (Rel. 68, Last updated, Version 4)
XX
DE Tobacco streak virus putative viral replicase mRNA, complete cds.
XX
KW .
XX
OS tobacco streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Ilarvirus.
XX
RN [1]
RP 1-3491
RX MEDLINE; 98352566.
RX PUBMED; 9687875.
RA Scott S.W., Zimmerman M.T., Ge X.;
RT "The sequence of RNA 1 and RNA 2 of tobacco streak virus: additional
RT evidence for the inclusion of alfalfa mosaic virus in the genus Ilarvirus";
RL Arch. Virol. 143(6):1187-1198(1998).
XX
RN [2]
RP 1-3491
RA Scott S.W.;
RT ;
RL Submitted (04-DEC-1996) to the EMBL/GenBank/DDBJ databases.
RL Clemson University, Plant Pathology & Physiology, Long Hall, Clemson, South
RL Carolina 29634-0377, USA
XX
DR SPTREMBL; P89680; P89680.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3491
FT /db_xref="taxon:12317"
FT /organism="tobacco streak virus"
FT /lab_host="Nicotiana tabaccum cv Samsun"
FT 5'UTR 1. .37
FT CDS 38. .3322
FT /codon_start=1
FT /db_xref="SPTREMBL:P89680"
FT /product="putative viral replicase"
FT /protein_id="AAB48983.1"
FT /translation="MDSLSLPTVCDVVVPALNVDNLIRDYVSNVRADDSNNVSRFLGEV
FT ALKEIKSQVDTSNGDFQKLNVGFRLTPDEKNALKANFPGLEIAFRDSCHSSHSFAAAHR
FT VCETLNIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLA
FT ASVENRHRELPVDFCCHKFEECDVKAPFAMAIHSISDIPISTVATHCVRRGVRKLIASV
FT MMDPLMMLYDKGHIPLLNVDWEKEDVEETGKTLIHFHFVDAPGLSYSHDFDTLSQYMIT
FT NQVIVNNSYSFRVERTACLSGVYIVEMTLSMTDGHSLAYLKPMRDVSCAWLSSLRKKVF
FT VKLAVPISAEWYTEQFEVRHALMDESLVRYVSEAAFRQFSKTKDPETLVQYIATMLSSS
FT SNHVVINGITMRSGSPIKFDEYVPLAVTFYVMAAWRYKMIAPGIDAVKTRTEKNVDILD
FT EKGLIKEDFNVVNALLEDAGLIEPKLPHFTDVIKNAGLRGFGKKTIEKTRDDVLLIKPR
FT SLLREVIYTVRSVFGLTILDSDYNLVSGVPSHMKATHVWSVFVGNLAFPSCLNVNECVN
FT ELLVNHMEMMEETKKEETRQQAFKDARDRALMTIAKAIEKDQTIKDGLLPILDLCKIKE
FT ELTAASNSLSLTPEAIEQTDSRLMKASGSDVNPYADSIKEAIHYFNEVEVANTRNLRSL
FT GIYLGWSIPKNKQTYDALQGRNESVRVYVPYENKWYPSAPTSQYERAMTVDGYFSLPME
FT FEAITDGCRREISKYHLLVVDDSCIFCSGQRMIPALEAALKLVPTFKITIVDGVAGCGK
FT TTHLKKIARIDSSAAGSPDLVLTSNRSSSDELKEVIDCPDVMKYRIRTVDSYLMLKSWF
FT SAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKI
FT SCTTDHLQMSKRCHSLFKENFLQKQDCEVSERCSSLAELCPIQSVIQIQPERDVLYMTH
FT TRADKETLMRIPGMPKDRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGPDLGPCHNL
FT VAISRHRKSFRYFTVAPHDNDDQIVKCINYARSLSSGDLDGVRVLI"
FT 3'UTR 3323. .3491
XX
SQ Sequence 3491 BP; 984 A; 693 C; 807 G; 1007 T; 0 other;
U80934 Length: 3491 December 21, 2001 16:00 Type: N Check: 4244 ..
1 gtattactgt tttgtatccg aaacagaacc tccagaaatg gattccttat
51 ctttacccac cgtgtgtgac gttgttgttc cggctttgaa cgttgacaat
101 ctcattcgag attatgtcag taatgtgaga gccgatgata gcaacaacgt
151 cagccgcttc cttggtgaag tagccctgaa agaaattaaa tctcaggtag
201 acaccagtaa tggtgatttc cagaagttga acgtcggttt tcgtttgact
251 cctgatgaga aaaatgcact gaaagcgaat tttcccggtc tcgaaattgc
301 gtttagagac tcgtgtcatt cgtcacacag ttttgccgca gctcatagag
351 tctgtgagac cctaaatata tacaatcggt ttaaaacaaa aaccgagcgc
401 attatcgatc ttggcggtaa ctatgttaca cacgccaaac aaggtcgttc
451 taatgtgcat tcctgctgtc ccatccttga tgttagggac ggtgctaggc
501 ataccgatcg gtatatatct ttagctgcct ctgttgagaa tcgccacaga
551 gagttaccag ttgatttctg ttgccataag tttgaggagt gtgatgttaa
601 ggcacctttt gccatggcta tccattccat cagtgacatt cccatctcaa
651 cggtcgcgac acattgcgtt aggcgtggtg tgcggaaact tattgcgtcc
701 gttatgatgg atccacttat gatgctttat gacaagggtc atataccttt
751 actcaatgtt gattgggaaa aagaggacgt tgaagaaacg ggaaaaacac
801 tcattcattt ccattttgtt gacgctcccg ggttgagcta ttcacacgat
851 tttgatacac tgtcccaata catgattaca aaccaggtta ttgttaataa
901 ttcctactct tttagggtag agaggacagc ctgtttatca ggtgtgtata
951 tcgtggagat gactttgtct atgacagacg gtcattcttt agcttacctg
1001 aagcccatgc gtgatgtttc atgcgcttgg ttgtcaagtt tgaggaagaa
1051 agtcttcgtt aaattagccg tacctattag tgccgaatgg tatactgaac
1101 aattcgaagt taggcacgcg ctaatggacg agtcattagt tcgctatgtt
1151 tccgaagctg ctttccgaca gttttcgaag acaaaagacc ccgaaacact
1201 ggttcagtac atagcaacta tgttatcttc ttcatcaaat cacgtggtca
1251 taaacggaat aacgatgcga agtggtagcc ctataaaatt tgatgaatat
1301 gttccattag ccgttacttt ctatgttatg gccgcgtggc gttacaaaat
1351 gattgcccct ggtatcgatg ctgtaaaaac aagaaccgag aagaacgttg
1401 atattctcga tgagaagggt cttatcaagg aagactttaa tgttgtcaat
1451 gcgcttcttg aagacgctgg gttaattgaa cccaagttgc cccatttcac
1501 ggatgtcata aaaaacgcag gactccgagg atttgggaag aaaacgatcg
1551 aaaaaaccag ggatgatgtt ttattgataa aaccaaggag cctgttgcgt
1601 gaagtgattt acacggtccg aagtgttttc gggctcacga ttttagactc
1651 ggactacaat ttggtttccg gtgttccttc tcacatgaag gcgactcatg
1701 tgtggtctgt ttttgtcgga aatcttgcat tcccatcttg cctcaacgtc
1751 aatgagtgtg ttaacgagtt acttgttaat cacatggaaa tgatggaaga
1801 gacaaagaag gaagaaacac gtcaacaggc ctttaaggat gccagagatc
1851 gtgctctgat gacgatagcg aaagctattg agaaagatca aactatcaaa
1901 gatggtttgt taccgattct tgacctttgt aaaattaaag aagaattgac
1951 ggcggcctcg aattccttga gcttgactcc agaggccatt gaacaaacag
2001 attcgagatt gatgaaagcc tccggaagcg acgtcaatcc atatgccgat
2051 tcgataaaag aagccatcca ttactttaat gaagtggaag tggctaacac
2101 gagaaatctt cgcagtctgg gaatttatct tggatggtct attcccaaga
2151 ataaacagac ttacgatgcc ctacagggta ggaatgaatc tgtcagggtg
2201 tatgtaccat atgaaaataa atggtacccc tctgcaccca ccagtcagta
2251 tgaaagggct atgactgttg atgggtattt ttcgcttcca atggaattcg
2301 aagcgattac cgacggttgt agacgtgaga tatccaaata ccacctcttg
2351 gttgtcgatg attcgtgtat tttctgttca ggtcagagaa tgatcccagc
2401 tttagaagct gccttgaaac tggtcccaac ctttaaaatc acaattgttg
2451 atggtgtcgc gggttgtgga aagactacac atctgaagaa gattgcacgc
2501 attgattcaa gcgctgcagg tagtcctgat ctggtactga cgagtaatcg
2551 tagttcatca gatgagctca aagaagttat cgactgtcct gatgtgatga
2601 aataccgcat tagaacggtc gatagttatt tgatgctcaa atcctggttt
2651 tcggctgagc gtctattgtt tgatgaatgc ttcttgacgc atgcgggttg
2701 cgtgtatgca gcagccactc tggctcaggt gaaagaagta attgcttttg
2751 gtgacacaga gcaagttcct ttcatatcta gattaccaga gtttcgcatg
2801 gaacatcata aggttaaagg gaagatatca tgtacaaccg accacttaca
2851 gatgtccaag agatgccaca gcttgtttaa agaaaatttt ctacaaaaac
2901 aagactgtga agtcagcgag cgttgttcat cgctcgctga attgtgccca
2951 attcaaagtg tgattcaaat tcaaccggag cgtgatgttt tgtacatgac
3001 acacacgcga gcagataagg agaccctgat gagaattccc gggatgccga
3051 aagacaggat aaaaaccact catgaagccc aaggagaaac ctgggatcat
3101 gtggtaatgt ttcgtctgtc gaagactaca aatctgctac attcgggtaa
3151 gggacctgat ttaggtccat gtcacaattt ggttgccata tctagacatc
3201 ggaaatcatt taggtacttt acagttgcgc ctcatgataa cgatgatcag
3251 atagtgaagt gtatcaatta cgctagatcc ttaagttcag gggatttaga
3301 cggggttcgt gttttaattt gatacaatat gtttaatgta ctccctctat
3351 agagagttgc cgcagatttt ctgcgaagtt tcggaactgt attttgccgg
3401 tggataggcg ggtgtagtgc ttctccaaca cacttccact gatgctgttt
3451 atatctaatg atataaacaa tgcctccttt aaaggagatg c