Sequence of DPV Tomato bushy stunt virus
Tomato bushy stunt virus pepper isolate, complete genome.
ACC No: U80935
Dated: 2005-04-18 | Length: 4776 | CRC: -1448642447
!!NA_SEQUENCE 1.0
ID TBU80935 standard; circular genomic RNA; VRL; 4776 BP.
XX
AC U80935;
XX
SV U80935.1
XX
DT 25-DEC-1996 (Rel. 50, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE Tomato bushy stunt virus pepper isolate, complete genome.
XX
KW .
XX
OS Tomato bushy stunt virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4776
RX MEDLINE; 98285798.
RX PUBMED; 9621100.
RA Havelda Z., Szittya G., Burgyan J.;
RT "Characterization of the molecular mechanism of defective interfering
RT RNA-mediated symptom attenuation in tombusvirus-infected plants";
RL J. Virol. 72(7):6251-6256(1998).
XX
RN [2]
RP 1-4776
RX DOI; 10.1016/S0168-1702(00)00178-7.
RX MEDLINE; 20473138.
RX PUBMED; 11018282.
RA Szittya G., Salamon P., Burgyan J.;
RT "The complete nucleotide sequence and synthesis of infectious RNA of
RT genomic and defective interfering RNAs of TBSV-P";
RL Virus Res. 69(2):131-136(2000).
XX
RN [3]
RP 1-4776
RA Szittya G., Burgyan J.;
RT ;
RL Submitted (04-DEC-1996) to the EMBL/GenBank/DDBJ databases.
RL Institute for Plant Sciences, Agricultural Biotechnology Center,
RL Szent-Gyorgyi street 4. P.O. Box 411, Godollo H-2101, Hungary
XX
FH Key Location/Qualifiers
FH
FT source 1. .4776
FT /db_xref="taxon:12145"
FT /mol_type="genomic RNA"
FT /organism="Tomato bushy stunt virus"
FT /isolate="pepper"
FT CDS 167. .1057
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:P90340"
FT /note="TBSV-P ORF1"
FT /product="33K protein"
FT /protein_id="AAC32731.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV
FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVK"
FT CDS 167. .2623
FT /codon_start=1
FT /db_xref="GOA:P89211"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:P89211"
FT /note="TBSV-P ORF2; fusion gene of the first 2 TBSV-P ORFs;
FT translation product of terminator readthrough at UAG
FT terminator of ORF1"
FT /transl_except=(pos:1055. .1057,aa:OTHER)
FT /product="92K protein"
FT /protein_id="AAC32730.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIDCDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAAIPIIPLLSYATWV
FT RAVSVRAFGNELSFNVRVPRPSVPKKGLLLRLAAGLAFRPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLITGSRLTKVIASTGTPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRAGPPNAKDRNIF
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARAPQPTKGAFGRLSPFRKAV
FT CEKVGVAHRLGYDGFLSYYDGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK
FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYSADEVGAIFREK
FT WDRFDKPVAIGLDAWRFDQHCSVEALQYEHSFYRAMYPGNKLLGKLLEWQLHNKGKGYV
FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER
FT RNLKQVQRTLPEYFLNLGYTMKVERPVFQLEEVEFDQAHPVQFQGGWKMVGNVRTAMRK
FT DVHCVNNIRDLATRRAWSNAQHHGGLALRAGIPVVETFYSRFKLYDTPRKHQRIDTVTN
FT VHKWRGSGGSYVVTPESRASFWAAFCLTGDEQLALEDRLERWEMDLFGEEGVDAHEPSI
FT LDSAVA"
FT CDS 2653. .3819
FT /codon_start=1
FT /db_xref="GOA:P89212"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000169"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:P89212"
FT /note="TBSV-P ORF3"
FT /product="41K protein"
FT /protein_id="AAC32732.1"
FT /translation="MAMVRRNNNTGMIPVSTKQLLALGAAAGATALQGYVKNNGMAIVK
FT GAVYLTKREYKAVRRRGGKKQQMINHVGGTGGAIMAPVAVTRQLVGSKPKFTGRTSGSV
FT TVTHREYLSQVNNSTGFQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYTFNNVVLH
FT YVPLCSTTEVGRVAIYFDKDSEDPEPADRVELANYSVLKETAPWAEAMLRVPTDKIKRF
FT CDDSSTSDHKLIDLGQLGIATYGGAGTNAVGDIFICYSVTLYFPQPTNTLLSTRRLDLA
FT GALVTASGPGYLLVSRTATVLTMTFRATGTFVISGTYRCLTATTLGLAGGVNVNSITVV
FT DNIGADSAFFINCTVSNLPSVVTFTSTGITSATVHCVRATGQNDVSLI"
FT CDS 3857. .4426
FT /codon_start=1
FT /db_xref="GOA:Q76S74"
FT /db_xref="InterPro:IPR005332"
FT /db_xref="UniProt/TrEMBL:Q76S74"
FT /note="TBSV-P ORF4"
FT /product="22K protein"
FT /protein_id="AAC32733.1"
FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVPLLPSNFLT
FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI
FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW
FT KVMYQEDALKVLKPSKKKASKTDSSV"
FT CDS 3889. .4407
FT /codon_start=1
FT /db_xref="GOA:P89213"
FT /db_xref="HSSP:1R9F"
FT /db_xref="InterPro:IPR004905"
FT /db_xref="UniProt/TrEMBL:P89213"
FT /note="TBSV-P ORF5"
FT /product="19K protein"
FT /protein_id="AAC32734.1"
FT /translation="MERAIQGNDAREQANSERWDGGSGSSTSPFQLPDESPSWTEWRLH
FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFG
FT VNQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG
FT VETFEEESE"
XX
SQ Sequence 4776 BP; 1255 A; 966 C; 1322 G; 1233 T; 0 other;
U80935 Length: 4776 May 10, 2005 10:09 Type: N Check: 4081 ..
1 agaaattccc caggatttct cgacctagta cgtctacctg gtgacttgcg
51 ctgtctgttg ctttgcgtag ggaatttctc tccaatatta ttatctttaa
101 tttggggttt gaaggttggg tctacccttc ggggggataa attgtaactt
151 ccaacaaata agcgacatgg agaccattaa gaggatgatc tggcctaaga
201 aagagatttt tgtgggtgat ttcgcgatcg gagttaatag gacggcaccg
251 gtggacattt tccaattggt gtgtcgtgtg gttctaagat acatgaggac
301 agggaaaata gactgtgatt ctgacagcat gactaagttt atagttgaat
351 tacttaaaac tgattgtgct gccaaatggg agtggtttat gaagagacgg
401 cagaggggcg actatgttat ccctctatct atagccgcca tcccaatcat
451 accgctgttg agttatgcca catgggtacg cgcagtctca gtcagggcct
501 ttgggaatga actttcgttc aatgtcagag tacctagacc atctgtacct
551 aagaaaggat tgctcctcag actggcggca ggcctagcgt tcagacctat
601 atgcgcgctg gcagtgtacg ctaccctacc tagggaaaaa ctgtcggtat
651 ttaagctgag aaccgaggca cgcgcacata tggaggatga gagagaagcg
701 acagattgct tggtggttga gccggcacgg gaactcaagg gtaaggatgg
751 tgaggatctc atcactggta gtagattaac taaggtgatt gcgtccacag
801 ggacgcctcg caggaggccg tatgcagcca agatcgcaca ggttgcgaga
851 gctaaggtgg gttaccttaa gaatagtcct gagaatagac taatctacca
901 gcgagtgatg attgagatca tggacaaaga ctgcgtcagg tatgttgaca
951 gggatgtcat attgccattg gctattggat gctgttttgt ctatccggat
1001 ggagtggagg agtcggcggc actatggggt tcccaggaat cccttggtgt
1051 caaataggga ggcctagtac gtctacctgg tgttgtaaca cagatcaatc
1101 gagatatccc atctgatgtg ttacttcccc aggaggtgct agaggttcgt
1151 gcaggacctc ccaatgctaa ggaccgtaat atatttatgg ttgcaggttg
1201 cccatcacag gcacggttct tagtacataa tcactgcctg aaaaacctta
1251 aaaggggtct tgtggagaga gtcttctgcg tagagagaaa cgggaagctc
1301 gctcgcgctc cacaacctac caaaggagct tttggacgtc tttccccgtt
1351 caggaaagcg gtttgtgaga aggttggggt agcccaccga cttgggtatg
1401 atgggtttct gtcatactac gacggtgcga aactccgtac ttacacacga
1451 gccgtggaga gtctgcatat cacacctgtt tccgagaggg atagtcattt
1501 gactaccttc gtgaaagcag agaagatatc gacgtctaaa ggtgacccag
1551 cacctcgggt gattcagcct cgaaacccga ggtacaatgt ggaacttgga
1601 agatatctac ggcatatgga atccaagctg atgaaagctg ttgatggcgt
1651 gttcggagaa acaacatgca tcaaaggata ctctgccgac gaggtgggtg
1701 caatttttcg ggagaaatgg gataggtttg ataaacctgt agccataggt
1751 ctcgatgcat ggaggtttga tcaacactgt tccgtggagg ctttgcaata
1801 tgagcatagt ttctacaggg ccatgtaccc tggcaacaag cttttgggca
1851 agttgttgga atggcaactc cataataaag gtaaaggtta tgtccctgat
1901 gggactataa cttatcgtaa ggagggttgt cgtatgagtg gggatataaa
1951 cacttcgttg gggaactatc tgttgatgtg tgcaatggta catgggtaca
2001 tgcgtcattt ggggattaat gaatttagtc tggcgaactg tggggatgat
2051 tgcgttctca ttcttgagcg caggaatctt aaacaggtgc agagaactct
2101 gcctgagtat ttccttaatt tgggttatac catgaaggtt gagcgacctg
2151 tatttcaatt ggaagaggtt gaatttgacc aggcacaccc agtacagttt
2201 caagggggtt ggaagatggt gggaaatgtc cgtactgcta tgagaaaaga
2251 cgtgcactgt gtcaataata tacgcgattt ggcgacgagg agagcttgga
2301 gtaatgctca acatcatgga gggctagcac ttagggctgg tatacctgtg
2351 gttgagactt tttactccag gttcaagctg tatgatacac ctcgtaagca
2401 tcaacgcatt gacacagtca ctaatgttca taagtggcgt ggatcgggtg
2451 ggagctatgt tgtgacccct gaatcaagag ctagcttttg ggctgctttt
2501 tgcctcacgg gggatgagca actggctctg gaggatcgtc tggagagatg
2551 ggagatggat ctattcggag aggagggtgt tgacgctcat gagcccagca
2601 tccttgactc cgccgtagct tgaccaagga tacacaaacg caggatagac
2651 acatggcaat ggtgagaaga aacaacaata cgggaatgat cccggtgagt
2701 acgaagcaat tactggcatt gggtgcggcc gctggggcca cagccttaca
2751 gggatatgtc aagaataatg ggatggccat cgtgaagggg gctgtctatc
2801 tgactaaaag agagtacaaa gcagtgcgga gaagaggagg taagaaacag
2851 cagatgatta atcatgtagg tgggacaggt ggtgctataa tggcgccggt
2901 tgcagtcacc agacaacttg ttggtagtaa gcctaagttt actggcagga
2951 cgtctgggtc tgtaacagtc acccaccgtg agtatctgtc acaagtgaat
3001 aattccacag gtttccaggt taatggggga attgtcggca atttgttaca
3051 actcaacccg ttgaatggta cattgttctc ttggttgcca gcaatagcat
3101 ccaattttga ccagtacaca tttaacaatg ttgtgttaca ttatgtcccc
3151 ctatgttcca ccactgaggt ggggagagtg gctatttact ttgataagga
3201 ctcagaagat cctgagcctg ctgatagagt tgagttggcg aattacagcg
3251 tgcttaaaga gacagcccct tgggctgaag cgatgctcag agtacccaca
3301 gataagatta agagattttg tgatgacagt tcaacatctg atcacaagct
3351 tatcgacctg ggtcagttgg gtattgctac atatggtggc gctgggacta
3401 acgctgttgg ggatatcttt atctgttaca gtgttacgtt atatttccct
3451 caacctacaa atacactcct tagtaccaga aggctcgacc ttgctggcgc
3501 tcttgtcaca gcatccggtc cggggtacct cttggtgtct cggactgcca
3551 ctgtcttgac gatgacattt cgtgcaactg gtacgtttgt catatccggt
3601 acgtacaggt gccttacagc aacaacacta ggcttggcag gcggggtgaa
3651 cgtcaatagt atcacagtag tcgacaatat aggtgctgac agtgcatttt
3701 tcataaattg cactgtctct aacctaccat ctgtggtgac gttcacatct
3751 accggcatca catcagccac agtacattgc gtgcgtgcaa ccggacagaa
3801 tgatgtttct ctaatctagt gtgtcctgcg aggggcctgt tgaacaagac
3851 cagttcatgg atactgaata cgaacaagtc aataaaccat ggaacgagct
3901 atacaaggaa acgacgctag ggaacaagct aacagtgaac gttgggatgg
3951 aggatcagga agttccactt ctcccttcca acttcctgac gaaagtccga
4001 gttggactga gtggcggcta cataacgatg agacgaattc gaatcaagat
4051 aatccccttg gtttcaagga aagctggggt ttcgggaaag ttgtatttaa
4101 gagatatctc agatacgaca ggacggaagc ttcattgcac agagtccttg
4151 gatcttggac gggagattcg gttaactatg cagcatctcg atttttcggt
4201 gtcaaccaga tcggatgtac ctatagtatt cggtttcgag gagttagtgt
4251 caccatttct ggagggtcga gaactcttca gcatctctgt gagatggcaa
4301 ttcggtctaa gcaagaactg ctacagctta ccccagtcga agtggaaagt
4351 aatgtatcaa gaggatgccc tgaaggtgtt gaaaccttcg aagaagaaag
4401 cgagtaagac agactcttca gtctgagttt gcggaaacga gtgtaaatct
4451 ggcatagcat acaggttact cttgttgggt tctagatgtt atgatgacga
4501 gtcggtcggg ctccgcgcta ggtttggtcg cctaggggat ggagatatgg
4551 aaagggtctc gtgtgctgtc agtcggtcga aagacgcgct tgcaacatgg
4601 gcctataacc ggataagtca tagcaatact agccaacatg aattggattc
4651 ctgtttacga aagttaggtg acacttgtgg aaacggacct ggacacggtt
4701 gatctcacct tcgggggggc tatagagatc gctggaagca ctaccggaca
4751 accggaacat tgcagcaatg cagccc