Sequence of DPV Tomato leaf curl Taiwan virus
Tomato leaf curl virus - Taiwan complete genome.
ACC No: U88692
Dated: 2005-04-18 | Length: 2739 | CRC: -1527983426
!!NA_SEQUENCE 1.0
ID TLU88692 standard; circular genomic DNA; VRL; 2739 BP.
XX
AC U88692;
XX
SV U88692.1
XX
DT 19-JUN-1997 (Rel. 52, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Tomato leaf curl virus - Taiwan complete genome.
XX
KW .
XX
OS Tomato leaf curl Taiwan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2739
RA Chiang B.T., Green S.K., Tsai W.S., Nakhla M.K., Maxwell D.P.;
RT "Molecular characterization of a tomato leaf curl geminivirus associated
RT with tomatoes in Taiwan";
RL Unpublished.
XX
RN [2]
RP 1-2739
RA Chiang B.T., Green S.K., Tsai W.S., Nakhla M.K., Maxwell D.P.;
RT ;
RL Submitted (06-FEB-1997) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Wisconsin, 1630 Linden Dr., Madison, WI
RL 53706-1598, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /db_xref="taxon:196093"
FT /mol_type="genomic DNA"
FT /note="TwToLCV"
FT /organism="Tomato leaf curl Taiwan virus"
FT /strain="Taiwan"
FT /clone="pTW1"
FT rep_origin join(1. .13,2602. .2739)
FT CDS 131. .472
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:O12276"
FT /gene="V2"
FT /product="precoat protein"
FT /protein_id="AAB61141.1"
FT /translation="MWDPLLNDFPESVHGLRCMLAIKYLHFVENTYSPDTLGYDLIRDL
FT ILVIRARDYVEATRRYSHFHSRFQGSSPSELRQPIWQPCSCPHCPRHKQKEFMGESALV
FT QKAQDVQDV"
FT CDS 291. .1064
FT /codon_start=1
FT /db_xref="GOA:O12277"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:O12277"
FT /note="CP"
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AAB61142.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFASPYGNRVAAPTVLVTNKKSSW
FT VNRPLFRKPKMYRMYKSPDVPRGCEGPCKVQSFEQRHDIAHVGKVICVSDVTRGNGLTH
FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGQYACKEQALVRKFMKINNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT CDS complement(1061. .1465)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:O12278"
FT /gene="C3"
FT /function="may enhance replication"
FT /protein_id="AAB61143.1"
FT /translation="MDSRTGELITAAQAENGVYTWTVNNPLYFKITQHNQRPFLQNHDV
FT MTIQIQFNYNLRKALGIHQCFLICQIWTRLQPQTSHFLRVFKYQCMKYLDNLGVISLNN
FT VIRAMTNVLYNVIEGTVDAQFSHIITFKIY"
FT CDS complement(1206. .1613)
FT /codon_start=1
FT /db_xref="GOA:O12279"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:O12279"
FT /gene="C2"
FT /function="likely involved in regulation of CP gene
FT expression"
FT /product="Trap protein"
FT /protein_id="AAB61144.1"
FT /translation="MRNSSPSPSHSTHVPIKVQHKIAKKRPIRRRRVDLPCGCSYYLGI
FT NCASHGFSHRGTHHCSSSREWRVYLDSQQSPLFQNNTTQPETISTEPRRHDNTNSIQLQ
FT PEESVGNTPVFSNLPDLDSFTTSDLAFLEGI"
FT CDS complement(1513. .2601)
FT /codon_start=1
FT /db_xref="GOA:O12280"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:O12280"
FT /note="rep gene; helicase homolog; replication-associated
FT protein"
FT /gene="C1"
FT /function="DNA-nicking protein; binds to the origin of
FT replication"
FT /product="Rep protein"
FT /protein_id="AAB61145.1"
FT /translation="MHPLNKFRINAKNYFLTYPHCSLTKEEALSQIQALQTPTNKLFIR
FT VCRELHEDGAPHLHILIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM
FT EKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKAEALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPLEVYISPFNSSSFDQVPVELVEWVAENVRDSAARPWRPMSIVVEGE
FT SRTGKTLWARSLGPHNYLCGHLDLSPRVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSDTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNFALKDWALKNAEFITLTEPL
FT YSRANQGPTQNSEEETNSQAEG"
FT CDS complement(2151. .2444)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:O12281"
FT /gene="C4"
FT /protein_id="AAB61146.1"
FT /translation="MGLLTCTFSSNSKENSNVKITDSSTSHPQPGQHISIRTFRELRAQ
FT QMSKPIWRKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY"
XX
SQ Sequence 2739 BP; 721 A; 537 C; 612 G; 869 T; 0 other;
U88692 Length: 2739 May 10, 2005 10:09 Type: N Check: 4000 ..
1 accggatggc cgcgattttt taagtgggtc ctacgcacta atgttggtcg
51 gccaatagaa acgctccctc aaagcttatt tacaaaaata cccgttataa
101 atacttggtg gctaagttac aatcagtaaa atgtgggatc cacttttaaa
151 tgattttccg gagtctgtgc atggtctacg gtgtatgctt gccattaagt
201 atctacattt tgtagaaaat acatattccc cggatacttt gggttacgat
251 ctcatacgtg atttgatttt agttatccgt gctagagatt atgtcgaagc
301 gacccgccga tatagtcatt tccactcccg cttccaaggt tcgtcgccgt
351 ctgaacttcg ccagcccata tggcaaccgt gtagctgccc ccactgtcct
401 cgtcacaaac aaaaagagtt catgggtgaa tcggcccttg ttcagaaagc
451 ccaagatgta caggatgtat aaaagcccag atgttcctcg tggttgtgaa
501 ggcccatgta aggtacagtc atttgaacag cgtcatgata tagcccatgt
551 gggcaaggta atatgtgtgt ccgatgtcac acgaggtaat gggctgaccc
601 atcgtgttgg gaagaggttt tgtgttaagt ccatttatgt gttgggtaag
651 atatggatgg atgagaatat caagacgaag aatcacacaa atactgtgat
701 gttcttctta gtccgtgata gaaggccttt tggtactcca caagatttcg
751 gtcaggtctt taatatgtat gataatgagc ctagcactgc aacggtgaag
801 aatgacaata gagataggtt tcaagttctc cgtcgattcc aggctacggt
851 gactggcggt cagtatgcgt gcaaagaaca agctctagtt aggaagttta
901 tgaaaatcaa caaccatgtt acttataatc accaagaggc tgctaaatat
951 gataaccata cagagaatgc tttgttgttg tatatggcat gtactcatgc
1001 cagtaatcct gtgtatgcta ctttgaaaat cagaatttat ttctatgatt
1051 ctgttcaaaa ttaataaatt ttaaatgtta ttatatgtga aaactgagca
1101 tcgactgtgc cctctattac attgtatagt acatttgtca ttgctctaat
1151 tacattgttt aaactaataa ctcctaaatt gtctaaatac ttcatacatt
1201 gatatttaaa taccctcaag aaatgcgagg tctgaggttg taaacgagtc
1251 caaatctggc aaattagaaa acactggtgt attcccaacg ctttcctcag
1301 gttgtagttg aattgaattt gtattgtcat gacgtcgtgg ttctgtagaa
1351 atggtctctg gttgtgttgt gttattttga aatagagggg attgttgact
1401 gtccaggtat acacgccatt ctctgcttga gctgcagtga tgagttcccc
1451 tgtgcgagaa tccatgtgat gcgcagttaa ttccaagata ataagagcac
1501 ccacaaggaa gatcaaccct ccgcctgcga attggtctct tcttcgctat
1551 tttgtgttgg accttgattg gcacgtgagt agagtggctc ggtgagggtg
1601 atgaattccg cattctttaa agcccagtct ttgagtgcga aattcttttc
1651 ttcgtctaag tactctttat atgatgatgt tggccctgga ttgcaaagga
1701 agattgttgg gataccacct ttaatttgaa ttggtttccc gtatttggtg
1751 tcgctttgcc agtccctttg ggcccccatg aattctttaa agtgctttag
1801 atagtgggga tcgacgtcat caatgacgtt gtaccatgcc tcattgttgt
1851 agactcttgg gcttaggtca agatgaccac acaagtaatt gtgtgggcct
1901 agagacctgg cccaaagtgt cttccctgta cgactctctc cctctaccac
1951 aatactcatg ggtctccatg gccgcgcagc ggaatccctc acgttctcgg
2001 caacccattc tacaagttct actggaactt gatcaaatga agaagaatta
2051 aaaggagaaa tataaacctc taatggaggt gtaaaaatcc tatctaaatt
2101 actatttaaa ttatgaaact gtaaaacaaa atctttggga gctttctccc
2151 ttaatatatt gagggcctca gctttggacc ctgaattgat tgcctcggca
2201 tatgcgtcgt tggcagattg gcaacctcct ctagctgatc ttccatcgac
2251 ctggaaaatt ccatgatcaa gcacgtctcc gtctttctcc atataggttt
2301 tgacatctgt tgagctctta gctccctgaa tgttcggatg gaaatgtgct
2351 gacctggttg gggatgtgag gtcgaagaat ctgttatttt tacattggaa
2401 ttttccttcg aattggatga gaatgtgcag gtgaggagcc ccatcttcgt
2451 gaagctctct gcaaacccta atgaatagct tatttgttgg ggtttgtaga
2501 gcttgtattt gggaaagtgc ctcttctttg gttagggagc agtgtggata
2551 tgtgaggaag tagttcttcg catttatcct gaatttatta agtggatgca
2601 tgttgacttg gtcaatcggt gtctctcaaa cttctctatg tatcggtgta
2651 ttggggtctt atttatacct ggacactaaa tggcatttat gtaattacat
2701 aaatttacca atgggtaaag cggccatccg tttaatatt