Sequence of DPV Cauliflower mosaic virus
Cauliflower mosaic virus genome.
ACC No: V00140
Dated: 2006-11-14 | Length: 8031 | CRC: 96484225
ID V00140; SV 1; circular; genomic DNA; STD; VRL; 8031 BP.
XX
AC V00140; J02046;
XX
DT 03-NOV-1982 (Rel. 02, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 13)
XX
DE Cauliflower mosaic virus genome.
XX
KW circular; genome.
XX
OS Cauliflower mosaic virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-8031
RX PUBMED; 6269062.
RA Gardner R.C., Howarth A.J., Hahn P., Brown-Luedi M., Shepherd R.J.,
RA Messing J.;
RT "The complete nucleotide sequence of an infectious clone of cauliflower
RT mosaic virus by M13mp7 shotgun sequencing.";
RL Nucleic Acids Res. 9(12):2871-2888(1981).
XX
RN [2]
RP 1-8031
RX PUBMED; 1627769.
RA Yanagisawa S., Izui K.;
RT "MNF1, a leaf tissue-specific DNA-binding protein of maize, interacts with
RT the cauliflower mosaic virus 35S promoter as well as the C4 photosynthetic
RT phosphoenolpyruvate carboxylase gene promoter";
RL Plant Mol. Biol. 19(4):545-553(1992).
XX
DR EPD; EP07015; CAMV_35MJ.
DR EPD; EP07016; CAMV_35MN.
DR GOA; P03555.
DR GOA; P03558.
DR TRANSFAC; R03626; CAMV$35SR_05.
DR TRANSFAC; R03627; CAMV$35SR_06.
DR UniProtKB/Swiss-Prot; P03555; POL_CAMVC.
DR UniProtKB/Swiss-Prot; P03558; IBMP_CAMVC.
XX
CC See also entries and .
XX
FH Key Location/Qualifiers
FH
FT source 1. .8031
FT /organism="Cauliflower mosaic virus"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:10641"
FT CDS 364. .1347
FT /note="reading frame I"
FT /db_xref="GOA:P03546"
FT /db_xref="InterPro:IPR001022"
FT /db_xref="UniProtKB/Swiss-Prot:P03546"
FT /protein_id="CAA23452.1"
FT /translation="MDLYPEENTQSEQSQNSENNMQIFKSENSDGFSSDLMISNDQLKN
FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI
FT TREEINKRLSSLKPEVRKIMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDC
FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYI
FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSDFCTIQNDECNWAIDIAQNKALLG
FT AKTQSQIGNSLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE"
FT CDS 1349. .1828
FT /note="reading frame II"
FT /db_xref="GOA:P03549"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="InterPro:IPR010989"
FT /db_xref="UniProtKB/Swiss-Prot:P03549"
FT /protein_id="CAA23453.1"
FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH
FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKNIFKSRGVDYSSQLKE
FT VKSLLEAQNTRIKNLENAIQSLDNKIEPEPLTKEEVKELKESINSIKEGLKNIIG"
FT CDS 1830. .2219
FT /note="reading frame III"
FT /db_xref="GOA:P03552"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProtKB/Swiss-Prot:P03552"
FT /protein_id="CAA23454.1"
FT /translation="MANLNQIQKEVSEILSDQKSMKSDIKAILELLGSQNPTKESLEAV
FT AAKIVNDLTKLINDCPCNKEILEALGNQPKEQLIEQPKEKGKGLNLGKYTYPNYGVGNE
FT ELGSSGNPKALTWPFKAPAGWPNQF"
FT CDS 2201. .3667
FT /note="reading frame IV"
FT /db_xref="GOA:P03543"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProtKB/Swiss-Prot:P03543"
FT /protein_id="CAA23455.1"
FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQIID
FT LTSLPSDNLQVEQVMTTTDDSISEESEFLLAIGEISEDESDSGEEPEFEQVRMDRTGGT
FT EIPKEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSMGMLNIDCQINRRTLIDD
FT WAAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTTGDIIEQVINAMY
FT TMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLFDICYLEEFTCDYEKNMYKTEMADFPG
FT YINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQKKLKKF
FT NKKCCSIGEASVEYGGKKTSKKKYHKRYKKRYKVYKPYKKKKKFRSGKYFKPKEKKGSK
FT RKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAENLGLQPVEEPYEGVQEV
FT FILEYKEEEEETSTEESDDESSTSEDSDSD"
FT mRNA 3633. .5666
FT /note="reading frame V"
FT mRNA 5554. .7333
FT /note="reading frame VI"
FT old_sequence 6407
FT /replace="c"
FT /citation=[1]
XX
SQ Sequence 8031 BP; 2931 A; 1658 C; 1570 G; 1872 T; 0 other;
v00140 Length: 8031 14-NOV-2006 Type: N Check: 99 ..
1 ggtatcagag ccatgaatcg gtttaaaaac caaactcaag agggtaaaac
51 ctcaccaaaa tacgaaagag ttcttaactc taaagataaa agatctttca
101 agatcaaaac tagttccctc acaccggtga ccgacaggtt taccaccgta
151 aggtttcaga acaacatcga atgcgtttac gccaacttcg actctcagct
201 caagtcgtcg tacgatggta gatctaaaaa gatcaagaat ctaagcctta
251 aaaatcttag atgttatgaa gccttcctca ggaagtacct tctggaacaa
301 taaatctctc tgagaatagt actctaacga gtatccacag gaaaaataat
351 cttctgtgtt gagatggatt tgtatccaga agaaaatacc caaagcgagc
401 aatcgcagaa ttctgaaaat aatatgcaaa tatttaagtc agaaaattcg
451 gatggattct cctccgatct aatgatctca aacgatcaat taaaaaatat
501 ctctaagacc caattaactt tggagaaaga aaagatattt aaaatgccta
551 acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagatt
601 ctttactgcg tctcgacaaa agaattatca gtggacattc acgatgccac
651 aggtaaggta tatctccctt taatcactag agaggagata aataaaagac
701 tttctagctt aaaacctgaa gtcagaaaga tcatgtccat ggttcatctt
751 ggagcggtca aaatattgct taaagctcaa tttcgaaatg ggattgatac
801 cccaatcaaa attgctttaa tcgatgatag aattaattct agaagagatt
851 gccttctcgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt
901 actgtatacc ccaagtttgg aataagcctt aatacccaaa gacttaacca
951 aaccttaagc cttattcatg attttgagaa taaaaatctt atgaataaag
1001 gtgataaagt tatgaccata acctatatcg taggatatgc attaactaat
1051 agtcatcata gcatagatta tcaatcgaat gctacaattg aactagaaga
1101 cgtatttcaa gaaattggaa atgtccagca atctgacttt tgtacaatac
1151 aaaatgacga atgcaattgg gccattgata tagcccaaaa caaagcctta
1201 ttaggagcta aaacccaatc ccaaattggt aatagtcttc aaataggaaa
1251 cagtgcttca tcctctaata ctgaaaatga attagctagg gtaagccaaa
1301 acatagatct tttaaaaaac aaattaaaag agatctgtgg agaataaaat
1351 gagcattacg ggtcaaccgc atgtttataa aaaggatact attattagac
1401 taaaaccatt gtctcttaat agtaataata gaagttatgt ttttagttcc
1451 tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga
1501 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg
1551 gactaagcaa agacccttcg gagtccaaat caaaaaaccc gtcagttttt
1601 aatactgcaa aaaacatttt taagagtagg ggggttgatt actcgagcca
1651 actaaaggaa gtaaaatccc ttttagaagc tcaaaatact agaattaaaa
1701 atctagaaaa tgcaattcaa tccttagata ataagattga accagagccc
1751 ttaactaaag aagaagttaa agagctaaaa gaatcgatta actcgatcaa
1801 agaaggatta aagaatatta ttggctgaaa tggctaatct taatcaaatc
1851 cagaaagaag tctctgaaat cctcagtgac caaaaatcca tgaaatcgga
1901 tataaaagct atcttagaat tgctaggatc ccaaaatcct actaaagaaa
1951 gcttagaagc cgttgcagcg aaaatcgtta atgacttaac caagctcatc
2001 aatgattgtc cttgtaacaa agagatatta gaagccttag gcaatcagcc
2051 taaagagcaa ctaatagaac aacctaaaga aaaaggcaaa ggccttaatc
2101 taggaaaata tacttacccc aattacggcg taggaaatga agaattagga
2151 tcctctggaa accctaaagc tttaacttgg cctttcaaag ctccagcagg
2201 atggccgaat caattttaga caggaccatt aaccggttct ggtataacct
2251 gggagaagat tgtctctcag aaagtcaatt tgaccttatg ataaggttaa
2301 tggaagagtc ccttgacggg gaccaaatta ttgatctaac ctctctacct
2351 agtgataatt tgcaggtcga acaggttatg acaactaccg acgactcgat
2401 ctcggaagaa tcagaattcc ttctagcaat aggagaaata tctgaagacg
2451 aaagtgattc aggagaagaa cctgaattcg aacaagttcg aatggatcga
2501 acaggaggaa cggagattcc caaagaagaa gatggtgaag gaccatctag
2551 atacaatgag agaaagagaa agaccccgga ggaccggtac tttccaactc
2601 aaccaaagac catcccagga caaaagcaaa cgtctatggg aatgctcaac
2651 attgactgcc aaatcaatcg aagaacttta atcgatgatt gggcagcaga
2701 aatcggattg atagtcaaaa ccaacagaga agactatctt gatccagaaa
2751 caatactact cttgatggaa cacaaaacat caggaatagc caaggagtta
2801 atccgaaata caagatggaa ccgtactacc ggcgatatca tagaacaggt
2851 gatcaatgca atgtacacca tgttcttagg acttaactac tccgacaaca
2901 aggttgctga aaagatagac gagcaagaga aggccaagat cagaatgacc
2951 aagctccagc tcttcgacat ctgctacctt gaagaattta catgtgatta
3001 tgagaagaac atgtacaaga cggaaatggc ggatttccct ggatacatca
3051 accagtacct gtcaaaaatc cccatcatag gagaaaaagc gctaacacgc
3101 tttaggcatg aagccaacgg aaccagcatc tacagcttag gtttcgcggc
3151 aaagatagta aaagaagaac tatcaaaaat ctgcgactta tcaaagaagc
3201 agaagaagtt gaagaaattc aacaagaaat gctgcagcat cggtgaagct
3251 tcagtagaat atggaggcaa gaaaacatcc aagaagaagt atcataagcg
3301 atacaagaaa agatataagg tctataaacc ttataagaag aagaagaaat
3351 tccgatccgg aaaatacttc aagcccaaag agaagaaggg ctcaaagcga
3401 aagtattgcc caaaaggcaa gaaggactgc agatgttgga tctgcaatat
3451 cgaaggccat tacgccaacg aatgtcctaa tcgacaaagc tcggagaagg
3501 ctcacatcct tcaacaagca gagaatttgg gtctccagcc cgttgaagaa
3551 ccctatgaag gagttcaaga agtattcatc ttagaataca aagaagagga
3601 agaagaaacc tctacagaag aaagcgatga tgaatcatct acttctgaag
3651 actcagactc agattgagca ggtgatgaac gtcaccaatc ccaattcgat
3701 ctacatcaag ggaagactct acttcaaagg atacaagaag atagagcttc
3751 actgttttgt agacacggga gcaagcttat gcatagcatc caagttcgtc
3801 ataccagaag aacattgggt taatgcagaa agaccaataa tggtcaaaat
3851 agcagatgga agttcaatta ccatcagcaa agtctgcaaa gacatagact
3901 tgatcatagc cggcgagata ttcaaaattc ccaccgtcta tcagcaagaa
3951 agtggcatcg atttcataat cggcaacaac ttttgtcaac tgtatgaacc
4001 attcatacag tttacagata gagttatctt cacaaagaac aagtcctatc
4051 ctgttcatat tacgaagcta acaagagcag tgcgagtagg catcgaagga
4101 tttcttgaat caatgaagaa acgttcaaag actcagcaac ctgagccggt
4151 gaacatttcg acaaacaaga tagaaaatcc actagaagaa attgctattc
4201 tttcagaggg gaggaggtta tcagaagaaa aacttttcat cactcaacaa
4251 agaatgcaaa aaatcgaaga actactagag aaagtatgtt cagaaaatcc
4301 attagatcct aacaagacta agcaatggat gaaagcttca atcaagctca
4351 gcgacccaag caaagctatc aaggttaaac ccatgaaata cagcccaatg
4401 gatcgtgaag aatttgacaa gcaaatcaaa gagttactgg accttaaagt
4451 cattaaaccc agtaaaagcc ctcacatggc accagccttc ttggtcaaca
4501 atgaagccga gaagcgaaga ggaaagaaac gtatggtagt caactacaaa
4551 gctatgaaca aagccaccat aggagacgca tacaatcttc ccaacaaaga
4601 cgagttactt acactcattc gaggaaagaa gatcttttct tccttcgact
4651 gtaagtccgg attctggcaa gttctacttg atcaagaatc aagacctcta
4701 acggcattca catgtccaca aggtcactac gaatggaatg tggtcccttt
4751 cggcctaaag caggcaccat ccatattcca gagacacatg gacgaagcat
4801 ttcgtgtgtt cagaaaattc tgttgcgtgt atgtcgacga catcctcgta
4851 ttcagtaaca acgaagaaga tcacctactt cacgtagcaa tgatcttaca
4901 aaagtgcaat caacatggaa tcattctttc caagaagaaa gcacaactct
4951 tcaagaagaa gataaacttc cttggtctag aaatagatga aggaacacac
5001 aagcctcaag gacatatctt ggaacatatc aacaaattcc cagataccct
5051 tgaagacaag aagcaacttc agagattctt aggcatccta acatatgcct
5101 ctgattatat cccgaagcta gctcaaatca gaaagcctct gcaagccaag
5151 cttaaagaaa atgttccatg gaaatggaca aaggaggaca ccctctacat
5201 gcaaaaggtg aagaaaaatc tgcaaggatt tcctccacta catcatccct
5251 taccagagga aaagctgatc atcgagaccg acgcatcaga cgactactgg
5301 ggaggtatgt taaaagctat caaaattaac gaaggtacta ataccgagtt
5351 aatttgcaga tacgcatctg gaagctttaa agctgcagaa aggaattacc
5401 acagcaatga caaagagaca ttggcggtaa taaatactat aaagaaattc
5451 agtatttatc taactcctgt tcattttctg attaggacag ataatactca
5501 tttcaagagt tttgttaacc ttaattacaa aggagattca aaacttggaa
5551 gaaacatcag atggcaagca tggcttagcc actattcgtt tgatgttgaa
5601 catattaaag gaaccgacaa ccactttgcg gacttccttt caagagaatt
5651 caataaggtt aattcctaat tgaaatccga agataagatt cccacacact
5701 tgtggctgat atcaaaaagg ctactaccta tataaacaca tctctggaga
5751 ctgagaaaat cagacctcca agcatggaga acatagaaaa actcctcatg
5801 caagagaaaa tactaatgct agagctcgat ctagtaagag caaaaataag
5851 cttagcaaga gctaacggct cttcgcaaca aggagacctc cctctccacc
5901 gtgaaacacc ggtaaaagaa gaagcagttc attctgcact ggccactttt
5951 acgccaactc aagtaaaggc tattccagag caaacggctc ctggtaaaga
6001 atcaacaaat ccgttgatgg ctagtatctt gccaaaagat atgaacccag
6051 ttcaaactgg gataaggctt gcagtgccag gggacttttt acgtcctcat
6101 cagggaattc caatcccaca aaaatctgag cttagcagca tagttgctcc
6151 tctcagagca gaatcgggta ttcaccaccc tcatatcaac tactacgttg
6201 tgtataacgg tccacacgcc ggtatatacg atgactgggg ttgtacaaag
6251 gcggcaacaa acggcgttcc cggagttgca tacaagaagt ttgccactat
6301 tacagaggca agagcagcag ctgacgcgta cacaacaagt cagcaaacag
6351 acaggttgaa cttcatcccc aaaggagaag ctcaactcaa gcccaagagc
6401 tttgcgaagg ccttaaccag cccaccaaag caaaaagccc actggctcac
6451 gctaggaacc aaaaggccca gcagtgatcc agccccaaaa gagatctcct
6501 ttgccccgga gatcaccatg gacgactttc tctatctcta cgatctagga
6551 agaaagttcg acggagaagg tgacgatacc atgttcacca ccgataatga
6601 gaagattagc ctcttcaatt tcagaaagaa tgctgaccca cagatggtta
6651 gagaggccta cgcggcaggt ctcatcaaga cgatctaccc gagtaataat
6701 ctccaggaga tcaaatacct tcccaagaag gttaaagatg cagtcaaaag
6751 attcaggact aactgcatca agaacacaga gaaagatata tttctcaaga
6801 tcagaagtac tattccagta tggacgattc aaggcttgct tcataaacca
6851 aggcaagtaa tagagattgg agtctctaag aaagtagttc ctactgaatc
6901 aaaggccatg gagtcaaaaa ttcagatcga ggatctaaca gaactcgccg
6951 tgaagactgg cgaacagttc atacagagtc ttttacgact caatgacaag
7001 aagaaaatct tcgtcaacat ggtggagcac gacactctcg tctactccaa
7051 gaatatcaaa gatacagtct cagaagacca aagggctatt gagacttttc
7101 aacaaagggt aatatcggga aacctcctcg gattccattg cccagctatc
7151 tgtcacttca tcaaaaggac agtagaaaag gaaggtggca cctacaaatg
7201 ccatcattgc gataaaggaa aggctatcgt tcaagatgcc tctgccgaca
7251 gtggtcccaa agatggaccc ccacccacga ggagcatcgt ggaaaaagaa
7301 gacgttccaa ccacgtcttc aaagcaagtg gattgatgtg atatctccac
7351 tgacgtaagg gatgacgcac aatcccacta tccttcgcaa gacccttcct
7401 ctatataagg aagttcattt catttggaga ggacacgctg aaatcaccag
7451 tctctctcta caaatctatc tctctctatt ttctccataa taatgtgtga
7501 gtagttccca gataagggaa ttagggttct tatagggttt cgctcacgtg
7551 ttgagcatat aagaaaccct tagtatgtat ttgtatttgt aaaatacttc
7601 tatcaataaa atttctaatt cctaaaacca aaatccagta ctaaaatcca
7651 gatcacctaa agtccctata gatctttgtc gtgaatataa accagacatg
7701 agacgactaa acctggagcc cagacgccgt tcgaagctag aagtaccgct
7751 taggcaggag gccgttaggg aaaagatgct aaggcagggt tggttacgtt
7801 gactcccccg taggtttggt ttaaatatga taaagtggac ggaaggaagg
7851 aggaagacaa ggaaggataa ggttgcaggc cctgtgcaag gtaagaagat
7901 ggaaatttga tagaggtacg ttactatacc tatactatac gctaagggat
7951 gcttgtattt taccctatac cccctaataa ccccttatcg attttaagaa
8001 ataatccgca taagcccccg cttaaaaaat t