Sequence of DPV Cauliflower mosaic virus
Cauliflower mosaic virus genome.
ACC No: V00141
Dated: 2005-04-18 | Length: 8024 | CRC: -1163658501
!!NA_SEQUENCE 1.0
ID CAMVG2 standard; genomic DNA; VRL; 8024 BP.
XX
AC V00141; J02048;
XX
SV V00141.1
XX
DT 03-NOV-1982 (Rel. 02, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 8)
XX
DE Cauliflower mosaic virus genome.
XX
KW genome.
XX
OS Cauliflower mosaic virus
OC Viruses; Retroid viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-8024
RX DOI; 10.1016/0092-8674(80)90136-1.
RX MEDLINE; 81001865.
RX PUBMED; 7407912.
RA Franck A., Guilley H., Jonard G., Richards K., Hirth L.;
RT "Nucleotide sequence of cauliflower mosaic virus DNA";
RL Cell 21(1):285-294(1980).
XX
DR EPD; EP07015; CAMV_35MJ.
DR EPD; EP07016; CAMV_35MN.
XX
CC KST CAULIFLOWER
XX
FH Key Location/Qualifiers
FH
FT source 1. .8024
FT /db_xref="taxon:10641"
FT /mol_type="genomic DNA"
FT /organism="Cauliflower mosaic virus"
FT CDS 364. .1347
FT /db_xref="GOA:P03545"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/Swiss-Prot:P03545"
FT /note="reading frame (I)"
FT /protein_id="CAA23456.1"
FT /translation="MDLYPEENTQSEQSQNSENNMQIFKSENSDGFSSDLMISNDQLKN
FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI
FT TKEEINKRLSSLKPEVRKTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRRDC
FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYV
FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSEFCTIQNDECNWAIDIAQNKALLG
FT AKTKTQIGNNLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE"
FT CDS 1349. .1828
FT /db_xref="GOA:P03548"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="InterPro:IPR010989"
FT /db_xref="UniProt/Swiss-Prot:P03548"
FT /note="reading frame (II)"
FT /protein_id="CAA23457.1"
FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH
FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQLKE
FT IKSLLEAQNTRIKSLEKAIQSLENKIEPEPLTKEEVKELKESINSIKEGLKNIIG"
FT misc_feature 1628. .1628
FT /note="single-stranded gap (gap3)"
FT CDS 1830. .2219
FT /db_xref="GOA:P03551"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProt/Swiss-Prot:P03551"
FT /note="reading frame (III)"
FT /protein_id="CAA23458.1"
FT /translation="MANLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETV
FT AAKIVNDLTKLINDCPCNKEILEALGTQPKEQLIEQPKEKGKGLNLGKYSYPNYGVGNE
FT ELGSSGNPKALTWPFKAPAGWPNQF"
FT CDS 2201. .3670
FT /db_xref="GOA:P03542"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProt/Swiss-Prot:P03542"
FT /note="reading frame (IV)"
FT /protein_id="CAA23459.1"
FT /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQIID
FT LTSLPSDNLQVEQVMTTTEDSISEEESEFLLAIGETSEEESDSGEEPEFEQVRMDRTGG
FT TEIPKEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSMGMLNIDCQTNRRTLID
FT DWAAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTTGDIIEQVIDAM
FT YTMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFP
FT GYINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQKKLKK
FT FNKKCCSIGEASTEYGCKKTSTKKYHKKRYKKKYKAYKPYKKKKKFRSGKYFKPKEKKG
FT SKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIEEPYEGVQ
FT EVFILEYKEEEEETSTEESDGSSTSEDSDSD"
FT CDS 3633. .5672
FT /db_xref="GOA:P03554"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="InterPro:IPR001969"
FT /db_xref="InterPro:IPR009007"
FT /db_xref="UniProt/Swiss-Prot:P03554"
FT /note="reading frame (V)"
FT /protein_id="CAA23460.1"
FT /translation="MDHLLLKTQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVD
FT TGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEIFRIPTVY
FT QQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMK
FT KRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSE
FT NPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP
FT HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFD
FT CKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCC
FT VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHK
FT PQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWT
FT KEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELIC
FT RYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKG
FT DSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS"
FT misc_feature 4210. .4210
FT /note="single-stranded gap (gap2)"
FT CDS 5776. .7338
FT /db_xref="GOA:P03559"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="InterPro:IPR009027"
FT /db_xref="UniProt/Swiss-Prot:P03559"
FT /note="reading frame (VI)"
FT /protein_id="CAA23461.1"
FT /translation="MENIEKLLMQEKILMLELDLVRAKISLARANGSSQQGDLSLHRET
FT PEKEEAVHSALATFTPSQVKAIPEQTAPGKESTNPLMANILPKDMNSVQTEIRPVKPSD
FT FLRPHQGIPIPPKPEPSSSVAPLRDESGIQHPHTNYYVVYNGPHAGIYDDWGCTKAATN
FT GVPGVAHKKFATITEARAAADAYTTSQQTDRLNFIPKGEAQLKPKSFAKALTSPPKQKA
FT HWLMLGTKKPSSDPAPKEISFAPEITMDDFLYLYDLVRKFDGEGDDTMFTTDNEKISLF
FT NFRKNANPQMVREAYAAGLIKTIYPSNNLQEIKYLPKKVKDAVKRFRTNCIKNTEKDIF
FT LKIRSTIPVWTIQGLLHKPRQVIEIGVSKKVVPTESKAMESKIQIEDLTELAVKTGEQF
FT IQSLLRLNDKKKIFVNMVEHDTLVYSKNIKDTVSEDQRAIETFQQRVISGNLLGFHCPA
FT ICHFIVKIVEKEGGSYKCHHCDKGKAIVEDASADSGPKDGPPPTRSIVEKEDVPTTSSK
FT QVD"
FT modified_base complement(6658. .6658)
FT /note="modified D-C residue"
FT /mod_base=OTHER
FT misc_feature complement(8024. .8024)
FT /note="single-stranded gap (gap1)"
XX
SQ Sequence 8024 BP; 2946 A; 1649 C; 1558 G; 1871 T; 0 other;
V00141 Length: 8024 May 10, 2005 10:09 Type: N Check: 4541 ..
1 ggtatcagag ccatgaatcg gtttaagacc aaaactcaag agggtaaaac
51 ctcaccaaaa tacgaaagag ttcttaactc taaaaataaa agatctttca
101 agatcaaaca tagttccctc acaccggtga ccgacaggat taccaccgta
151 aggtttcaga acaacatcga aagcgtttac gccaacttcg actctcaact
201 caagtcgtcg tacgatggta gatctaaaaa gatcaagact ctaagcctta
251 aaaatcttag atgttacgaa gccttcctca ggaagtacct tctggaacaa
301 taaatctctc tgagaatagt actctattga gtatccacag gaaaaataac
351 cttctgtgtt gagatggatt tgtatccaga agaaaatacc caaagcgagc
401 aatcgcagaa ttctgaaaat aatatgcaaa tatttaaatc agaaaattcg
451 gatggattct cctccgatct aatgatctca aacgatcaat taaaaaatat
501 ctctaaaacc caattaacct tggagaaaga aaagatattt aaaatgccta
551 acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagatt
601 ctctactgcg tctcgacaaa agaattatca gtggacattc acgatgccac
651 aggtaaggta tatcttccct taatcactaa ggaagagata aataaaagac
701 tttccagctt aaaacctgaa gtcagaaaga ccatgtccat ggttcatctt
751 ggagcggtca aaatattgct taaagctcaa tttcgaaatg ggattgatac
801 cccaatcaaa attgctttaa tcgatgatag aatcaattct agaagagatt
851 gtcttcttgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt
901 actgtatacc ctaagtttgg aataagcctt aacacccaaa gacttaacca
951 aaccctaagc cttattcatg attttgaaaa taaaaatctt atgaataaag
1001 gtgataaagt tatgaccata acctatgtcg taggatatgc attaactaat
1051 agtcatcata gcatagatta tcaatcaaat gctacaattg aactagaaga
1101 cgtatttcaa gaaattggaa atgtccagca atctgagttc tgtacaatac
1151 agaatgatga atgcaattgg gccattgata tagcccaaaa caaagcctta
1201 ttaggagcta aaaccaagac tcaaattggt aataaccttc aaataggtaa
1251 cagtgcttca tcctctaata ctgaaaatga attagctagg gtaagccaga
1301 acatagatct tttaaagaat aaattaaaag aaatctgtgg agaataatat
1351 gagcattacg ggacaaccgc atgtttataa aaaagatact attattagac
1401 taaaaccatt gtctcttaat agtaataata gaagttatgt ttttagttcc
1451 tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga
1501 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg
1551 gattaagcaa agacccttcg gagtccaaat caaaaaaccc gtcagttttt
1601 aatactgcaa aaaccatttt taagagtggg ggggttgatt actcgagcca
1651 actaaaggaa ataaaatccc ttttagaagc tcaaaacact agaataaaaa
1701 gtctagaaaa agcaattcaa tccttagaaa ataagattga accagagccc
1751 ttaactaaag aggaagttaa agagctaaaa gaatcgatta actcgatcaa
1801 agaaggatta aagaatatta ttggctaaaa tggctaatct taatcagatc
1851 caaaaagaag tctctgaaat cctcagtgac caaaaatcca tgaaagcgga
1901 tataaaagct atcttagaat tattaggatc ccaaaatcct attaaagaaa
1951 gcttagaaac cgttgcagca aaaatcgtta atgacttaac caagctcatc
2001 aatgattgtc cttgtaacaa agagatatta gaagccttag gtacccaacc
2051 taaagagcaa ctaatagaac aacctaaaga aaaaggtaaa ggccttaact
2101 taggaaaata ctcttacccc aattacggag taggaaatga agaattagga
2151 tcctctggaa accctaaagc tttaacctgg cccttcaaag ctccagcagg
2201 atggccgaat caattttaga cagaaccatt aataggtttt ggtataatct
2251 gggagaagat tgtctctcag aaagtcaatt cgatcttatg ataagattga
2301 tggaagagtc ccttgacggg gaccaaatta ttgatctaac ctctctacct
2351 agtgataatt tgcaggttga acaggttatg acaactaccg aagactcaat
2401 ctcggaagaa gaatcagaat tccttctagc aataggagaa acatctgaag
2451 aagaaagcga ttcaggagaa gaacctgaat tcgagcaagt tcgaatggat
2501 cgaacaggag gaacggagat tccaaaagaa gaagatggtg aaggaccatc
2551 tagatacaat gagagaaaga gaaagacccc ggaggaccgg tactttccaa
2601 ctcaaccaaa gaccattcca ggacaaaagc aaacgtctat gggaatgctc
2651 aacattgact gccaaaccaa tcgaagaact ctaatcgacg actgggcagc
2701 agaaatcgga ttgatagtca agaccaatag agaagactat ctcgatccag
2751 aaacaattct actcttgatg gaacacaaaa catcaggaat agccaaggag
2801 ttaatccgaa atacaagatg gaaccgcact accggagaca tcatagaaca
2851 ggtgatcgat gcgatgtaca ccatgttctt aggactaaac tactccgaca
2901 acaaagttgc tgagaagatt gacgagcaag agaaggccaa gatcagaatg
2951 accaagctcc agctctgcga catctgctac cttgaggaat ttacatgtga
3001 ttatgaaaag aacatgtata agacagaact ggcggatttc ccaggatata
3051 tcaaccagta cctgtcaaaa atccccatca ttggagaaaa agcgttaaca
3101 cgctttaggc atgaagctaa cggaaccagc atctacagtt taggtttcgc
3151 ggcaaagata gtcaaagaag aactatctaa aatctgcgac ttatccaaga
3201 agcagaagaa gttgaagaaa ttcaacaaga agtgttgtag catcggagaa
3251 gcttcaacag aatatggatg caagaagaca tccacaaaga agtatcacaa
3301 gaagcgatac aagaaaaaat ataaggctta caaaccttat aagaagaaaa
3351 agaagttccg atcaggaaaa tacttcaagc ccaaagaaaa gaagggctca
3401 aagcaaaagt attgcccaaa aggcaagaaa gattgcagat gttggatctg
3451 caacattgaa ggccattacg ccaacgaatg tcctaatcga caaagctcgg
3501 agaaggctca catccttcaa caagcagaaa aattgggtct ccagcccatt
3551 gaagaaccct atgaaggagt tcaagaagta ttcattctag aatacaaaga
3601 agaggaagaa gaaacctcta cagaagaaag tgatggatca tctacttctg
3651 aagactcaga ctcagactga gcaggtgatg aacgtcacca atcccaattc
3701 gatctacatc aagggaagac tctacttcaa gggatacaag aagatagaac
3751 ttcactgttt cgtagacacg ggagcaagcc tatgcatagc atccaagttc
3801 gtcataccag aagaacattg ggtcaatgca gaaagaccaa ttatggtcaa
3851 aatagcagat ggaagctcaa tcaccatcag caaagtctgc aaagacatag
3901 acttgatcat agccggcgag atattcagaa ttcccaccgt ctatcagcaa
3951 gaaagtggca tcgatttcat tatcggcaac aacttctgtc agctgtatga
4001 accattcata cagtttacgg atagagttat cttcacaaag aacaagtctt
4051 atcctgttca tattgcgaag ctaaccagag cagtgcgagt aggcaccgaa
4101 ggatttcttg aatcaatgaa gaaacgttca aaaactcaac aaccagagcc
4151 agtgaacatt tctacaaaca agatagaaaa tccactagaa gaaattgcta
4201 ttctttcaga ggggaggagg ttatcagaag aaaaactctt tatcactcaa
4251 caaagaatgc aaaaaatcga agaactactt gagaaagtat gttcagaaaa
4301 tccattagat cctaacaaga ctaagcaatg gatgaaagct tctatcaagc
4351 tcagcgaccc aagcaaagct atcaaggtta aacccatgaa gtatagccca
4401 atggatcgcg aagaatttga caagcaaatc aaagaattac tggacctaaa
4451 agtcatcaag cccagtaaaa gccctcacat ggcaccagcc ttcttggtca
4501 acaatgaagc cgagaagcga agaggaaaga aacgtatggt agtcaactac
4551 aaagctatga acaaagctac tgtaggagat gcctacaatc ttcccaacaa
4601 agacgagtta cttacactca ttcgaggaaa gaagatcttc tcttccttcg
4651 actgtaagtc aggattctgg caagttctgc tagatcaaga atcaagacct
4701 ctaacggcat tcacatgtcc acaaggtcac tacgaatgga atgtggtccc
4751 tttcggctta aagcaagctc catccatatt ccaaagacac atggacgaag
4801 catttcgtgt gttcagaaag ttctgttgcg tttatgtcga cgacattctc
4851 gtattcagta acaacgaaga agatcatcta cttcacgtag caatgatctt
4901 acaaaagtgt aatcaacatg gaattatcct ttccaagaag aaagcacaac
4951 tcttcaagaa gaagataaac ttccttggtc tagaaataga tgaaggaaca
5001 cataagcctc aaggacatat cttggaacac atcaacaagt tccccgatac
5051 ccttgaagac aagaagcaac ttcagagatt cttaggcata ctaacatatg
5101 cctcggatta catcccgaag ctagctcaaa tcagaaagcc tctgcaagcc
5151 aagcttaaag aaaacgttcc atggagatgg acaaaagagg ataccctcta
5201 catgcaaaag gtgaagaaaa atctgcaagg atttcctcca ctacatcatc
5251 ccttaccaga ggagaagctg atcatcgaga ccgatgcatc agacgactac
5301 tggggaggta tgttaaaagc tatcaaaatt aacgaaggta ctaatactga
5351 gttaatttgc agatacgcat ctggaagctt taaagctgca gaaaagaatt
5401 accacagcaa tgacaaagag acattggcgg taataaatac tataaagaaa
5451 tttagtattt atctaactcc tgttcatttt ctgattagga cagataatac
5501 tcatttcaag agtttcgtta atctcaatta caaaggagat tcgaaacttg
5551 gaagaaacat cagatggcaa gcatggctta gccactattc atttgatgtt
5601 gaacacatta aaggaaccga caaccacttt gcggacttcc tttcaagaga
5651 attcaataag gttaattcct aattgaaatc cgaagataag attcccacac
5701 acttgtggct gatatcaaaa ggctactgcc tatttaaaca catctctgga
5751 gactgagaaa atcagacctc caagcatgga gaacatagaa aaactcctca
5801 tgcaagagaa aatactaatg ctagagctcg atctagtaag agcaaaaata
5851 agcttagcaa gagctaacgg ctcttcgcaa caaggagacc tctctctcca
5901 ccgtgaaaca ccggaaaaag aagaagcagt tcattctgca ctggctactt
5951 ttacgccatc tcaagtaaaa gctattccag agcaaacggc tcctggtaaa
6001 gaatcaacaa atccgttgat ggctaatatc ttgccaaaag atatgaattc
6051 agttcagact gaaattaggc ccgtaaagcc atcggacttc ttacgtccac
6101 atcagggaat tccaatccca ccaaaacctg aacctagcag ttcagttgct
6151 cctctcagag acgaatcggg tattcaacac cctcatacca actactacgt
6201 cgtgtataac ggacctcatg ccggtatata cgatgactgg ggttgtacaa
6251 aggcagcaac aaacggtgtt cccggagttg cgcataagaa gtttgccact
6301 attacagagg caagagcagc agctgacgcg tatacaacaa gtcagcaaac
6351 agataggttg aacttcatcc ccaaaggaga agctcaactc aagcccaaga
6401 gctttgcgaa ggccttaaca agcccaccaa agcaaaaagc ccactggctc
6451 atgctaggaa ctaaaaagcc cagcagtgat ccagccccaa aagagatctc
6501 ctttgcccca gagatcacaa tggacgactt cctctatctc tacgatctag
6551 tcaggaagtt cgacggagaa ggtgacgata ccatgttcac cactgataat
6601 gagaagatta gccttttcaa tttcagaaag aatgctaacc cacagatggt
6651 tagagaggct tacgcagcag gtctcatcaa gacgatctac ccgagcaata
6701 atctccagga gatcaaatac cttcccaaga aggttaaaga tgcagtcaaa
6751 agattcagga ctaactgcat caagaacaca gagaaagata tatttctcaa
6801 gatcagaagt actattccag tatggacgat tcaaggcttg cttcacaaac
6851 caaggcaagt aatagagatt ggagtctcta aaaaggtagt tcccactgaa
6901 tcaaaggcca tggagtcaaa gattcaaata gaggacctaa cagaactcgc
6951 cgtaaagact ggcgaacagt tcatacagag tctcttacga ctcaatgaca
7001 agaagaaaat cttcgtcaac atggtggagc acgacacgct tgtctactcc
7051 aaaaatatca aagatacagt ctcagaagac caaagggcaa ttgagacttt
7101 tcaacaaagg gtaatatccg gaaacctcct cggattccat tgcccagcta
7151 tctgtcactt tattgtgaag atagtggaaa aggaaggtgg ctcctacaaa
7201 tgccatcatt gcgataaagg aaaggccatc gttgaagatg cctctgccga
7251 cagtggtccc aaagatggac ccccacccac gaggagcatc gtggaaaaag
7301 aagacgttcc aaccacgtct tcaaagcaag tggattgatg tgatatctcc
7351 actgacgtaa gggatgacgc acaatcccac tatccttcgc aagacccttc
7401 ctctatataa ggaagttcat ttcatttgga gaggacacgc tgaaatcacc
7451 agtctctctc tacaaatcta tctctctcta taataatgtg tgagtagttc
7501 ccagataagg gaattagggt tcttataggg tttcgctcat gtgttgagca
7551 tataagaaac ccttagtatg tatttgtatt tgtaaaatac ttctatcaat
7601 aaaatttcta attcctaaaa ccaaaatcca gtactaaaat ccagatctcc
7651 taaagtccct atagatcttt gtggtgaata taaaccagac acgagacgac
7701 taaacctgga gcccagacgc cgtttgaagc tagaagtacc gcttaggcag
7751 gaggccgtta gggaaaagat gctaaggcag ggttggttac gttgactccc
7801 ccgtaggttt ggtttaaata tcatgaagtg gacggaagga aggaggaaga
7851 caaggaagga taaggttgca ggccctgtgc aaggtaagac gatggaaatt
7901 tgatagaggt acgttactat acttatacta tacgctaagg gaatgcttgt
7951 atttacccta tataccctaa tgacccctta tcgatttaaa gaaataatcc
8001 gcataagccc ccgcttaaaa aatt