Sequence of DPV Carnation etched ring virus
Carnation etched ring virus (CERV) DNA
ACC No: X04658
Dated: 2005-04-18 | Length: 7932 | CRC: 2118653246
!!NA_SEQUENCE 1.0
ID CERVDNA standard; genomic DNA; VRL; 7932 BP.
XX
AC X04658;
XX
SV X04658.1
XX
DT 23-JUN-1988 (Rel. 16, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 10)
XX
DE Carnation etched ring virus (CERV) DNA
XX
KW overlapping genes; unidentified reading frame.
XX
OS Carnation etched ring virus
OC Viruses; Retroid viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-7932
RA Hull R., Sadler J., Longstaff M.;
RT "The sequence of carnation etched ring virus DNA: comparison with
RT cauliflower mosaic virus and retroviruses";
RL EMBO J. 5:3083-3090(1986).
XX
RN [2]
RP 1-7932
RA Palkovics L., Balazs E.;
RT "Simple and Rapid Detection of Carnation Etched Ring Virus by Polymerase
RT Chain Reaction";
RL Acta Phytopathol. Entomol. Hung. 31:161-168(1996).
XX
CC Data kindly reviewed (8- AUG-1988) by HULL DR. R.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7932
FT /db_xref="taxon:10640"
FT /mol_type="genomic DNA"
FT /organism="Carnation etched ring virus"
FT CDS 30. .989
FT /db_xref="GOA:P05396"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/Swiss-Prot:P05396"
FT /note="pot. ORF 1 (AA 1-319)"
FT /protein_id="CAA28356.1"
FT /translation="MNSSVEKQNSEIPEKENEEFTFQDNSQGFELEFSTNKKTLSKIQK
FT ANLSLKTNDAFNISFLKAFSRKNHIYYHVNYKEFSVDICDTHGKNYLPLVTKSEIKKNL
FT DKIKDEKVRSTISDIHFGAIKVLIKARFREGINSPIKMALIDDRITDRQDSILGAAHGN
FT LVYGKFMFTVYPKYTTSILDQRLDRTLAFIHHFERNDLMRKGDKVFSITYLVAYALANS
FT HHSIDYKEKDAIEIDDVFSEIGSVKSPTFTELDPEPNSWAIDIAQGKQPIGFKPKPTVS
FT NNFLRFDKETSPSSSHQKSLEEISDKIDTLVVKLNNIS"
FT CDS 986. .1492
FT /db_xref="GOA:P05397"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="UniProt/Swiss-Prot:P05397"
FT /note="pot. ORF 2 (AA 1-168)"
FT /protein_id="CAA28357.1"
FT /translation="MSLTTYPHIYKKEQILKLKRLNKLSNDRKFFFSSVKGTLPGIISH
FT CNNINEILGRCYLGICKLNSFFGLSKDPSDKLSVSKSPSVYTLPSKIFKEGGGNGDNTT
FT TQTDILKNAQDQVILSKKIDELQTQVKELSSKIEPEPLTKEDIKKTYETLSRIESGLKG
FT IIGIE"
FT CDS 1489. .1875
FT /db_xref="GOA:P05398"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProt/Swiss-Prot:P05398"
FT /note="pot. ORF 3 (AA 1-128)"
FT /protein_id="CAA28358.1"
FT /translation="MNLATIASEIEVVKTNQKTIESKIDQILAKIGSTPDESSNLESVA
FT AKIISDLTKEMKECHCNKEIVEILNKDKAIIPSPEQDSIQKRLSEPQYTFPNFDVGNEG
FT MGSSTNPNALKWPPTEKPQPWPPR"
FT CDS 1872. .3356
FT /db_xref="GOA:P05399"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProt/Swiss-Prot:P05399"
FT /note="pot. ORF 4 (AA 1-494)"
FT /protein_id="CAA28359.1"
FT /translation="MNREAILWKNINSIPEEPDLIKSLEVLSMEQNDRERELEHNLILN
FT KQISEQIPEWIIPDSLSELSSGIDLNFVLEEQEVNDNNSQPSLEEEVVSESDVESMRSF
FT NVAMNRGEVGESSNKRPKREPDLFTSFGKIREDIGDKNPSLNILNLDCVNSPSDRKNKI
FT DKWAAELGLVFLTNPEAYTTAPNAARARLAYMEHKSLGIVNRFIKSTQWTQMNGDILLN
FT VVSGLYTMFLGEDYTGNQEKTLEQERAKASLRLINLQLCDICSLQSFFCDYESNLYKLP
FT QNEYPSLVKQYLAKIPIVGEKASKRFEEEASAATSYSLGFAHKLVNEELAKICELSKKQ
FT KKLKRFNKNCCSTFEKPYEYGCKPSYSKKKKYSKKYKPKYTKYKVIRKKKKFSPGKYFK
FT PKDKKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNRQTSEKFKLIQIAENYGLEPIEN
FT PYEDQQEICLLEQIQLSSSDSELDDTCEESSSEESE"
FT CDS 3353. .5332
FT /db_xref="GOA:P05400"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="InterPro:IPR001969"
FT /db_xref="InterPro:IPR009007"
FT /db_xref="UniProt/Swiss-Prot:P05400"
FT /note="pot. ORF 5 (AA 1-659)"
FT /protein_id="CAA28360.1"
FT /translation="MSLRNRTNPNSIYVKGILKFPGYQTNLDLHCYVDTGSSLCMASKY
FT VIPEEYWQTAEKPLNIKIANGKIIQLTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLG
FT NNFCQLYSPFIQYTDRIYFHLNKQSVIIGKITKAYQYGVKGFLESMKKKSKVNRPEPIN
FT ITSNQHLFLEEGGNHVDEMLYEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIEL
FT IDPKTVVKVKPMSYSPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGK
FT KRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLT
FT AFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEH
FT YIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRI
FT EDKKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKS
FT FPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKE
FT LLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFD
FT VEHIAGTKNVFADFLQENTLTNYV"
FT CDS 5432. .6922
FT /db_xref="GOA:P05401"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="InterPro:IPR009027"
FT /db_xref="UniProt/Swiss-Prot:P05401"
FT /note="pot. ORF 6 (AA 1-496)"
FT /protein_id="CAA28361.1"
FT /translation="MERHEQILKEIAFLELRLQSLKLELEFVRSSGSEQKGKIEPFRPN
FT SECSATPMQTAIGKESSNPLMAISLPKAEKKHSKASEVPSPHKTVKEFSEIPKDFLRPN
FT QGIQIPKKNEDHSSSSSKEEKGIQNPKKDFYVVYNGPYAGIYDHWGTAKKATNKIPGVS
FT YKKFKDMLSARTSADIYTNAQFGEKLKYIPGATTSPKSFAEALTTRPSNMKSLGKPKFI
FT KIEEDDDVGFNPEFDLKSFLYIYKYGRNLEEEHFLTDRAFTIDKKEISYLNFVNNSDPE
FT GILESFKAGLVRFIYPSTNLQELRLLPKVLKSSVQRFRKKCIKDSEKEIFLKIKSTIPC
FT WEDYYNGLDDSVSYRPNYLVQIGISKGVNYQPSQKMEAVVLKEQWQGIAEEKAIEFFQA
FT IEDILSNEKIFIIYCDDRILIYSSSPKERTKEDLMAILNFQSEVSSCKLLGFHSDKICS
FT YLNKKASVGKPYSCPQKGKAVITSGPSFSVEDTLSDTE"
XX
SQ Sequence 7932 BP; 2937 A; 1442 C; 1442 G; 2111 T; 0 other;
X04658 Length: 7932 May 10, 2005 10:10 Type: N Check: 3438 ..
1 tggtatcaga gccatagtgc tcaaaaatca tgaattcctc tgttgaaaaa
51 cagaattctg aaattcctga aaaggaaaat gaagagttta ctttccaaga
101 taactctcaa ggatttgaac tagagttttc taccaacaag aaaactttat
151 caaaaattca aaaagctaat ctcagcttaa aaactaatga tgctttcaac
201 attagtttcc ttaaggcatt cagccgaaaa aatcatatct actaccacgt
251 gaattataaa gaattctctg tagatatatg tgatacgcat ggtaaaaact
301 atttaccatt agtcactaaa tctgaaatca agaagaatct tgataaaata
351 aaggatgaga aagtaaggtc tactatctca gatatccact tcggagctat
401 taaagttctg ataaaagcga gattccgaga agggataaat tctccgataa
451 aaatggcgtt aatcgatgat agaatcaccg accgtcaaga cagtattcta
501 ggagccgcac acggaaacct agtctacggt aaatttatgt tcaccgtcta
551 ccctaagtat accacttcaa tcttagatca aaggttagac agaactctag
601 cgttcatcca tcactttgag cgcaatgatc tcatgagaaa aggagataaa
651 gtctttagca tcacctacct agtagcttat gctttagcaa atagtcatca
701 ctcgatagac tataaagaaa aagacgcaat tgaaatagat gatgtctttt
751 ctgaaatagg atctgttaaa agcccaacct tcaccgagct tgacccagaa
801 cctaattctt gggctataga catagcacaa ggaaaacaac ccatagggtt
851 taaaccaaaa cctacagtta gcaataactt tcttaggttt gataaggaga
901 caagtccatc ttcgtctcat caaaaatcac tagaggaaat tagtgataaa
951 atagatacct tggtagttaa gttaaacaat atatcatgag tttaactacc
1001 tatcctcata tctataagaa agagcaaatt cttaagctta agcggcttaa
1051 taagctctca aatgacagaa agttcttctt tagctctgtt aaaggaactt
1101 tacctggcat aataagccac tgcaacaata tcaatgagat attaggcaga
1151 tgttatttag gaatctgtaa gctaaattca ttctttggat taagcaaaga
1201 ccctagtgac aaattaagtg ttagtaaatc accgtcagtt tacaccttgc
1251 cttccaaaat ctttaaggag gggggaggaa atggtgacaa cacaacaaca
1301 cagacagata tactgaaaaa tgctcaagat caggtcatct taagcaaaaa
1351 gattgatgaa cttcaaactc aggttaagga actctctagt aaaatagaac
1401 cagaacccct aaccaaagaa gacatcaaga aaacctatga aaccttatcc
1451 aggatagaat ccggcctaaa aggaattata ggaatagaat gaatctggcc
1501 accatcgcgt cagaaatcga ggttgttaaa accaaccaaa agactataga
1551 gtctaaaata gatcaaattc tagctaaaat aggatcaact cctgatgaaa
1601 gctcgaatct tgagtcagtt gcagcaaaaa ttatttcaga tcttactaaa
1651 gaaatgaaag aatgccactg caataaagaa attgttgaaa tcctcaacaa
1701 agacaaagct atcattccat ctccggaaca agacagcata caaaagagat
1751 tgagtgaacc tcaatataca tttcctaact ttgacgtcgg aaatgaaggc
1801 atgggatctt caactaatcc caacgcttta aaatggccgc caacagagaa
1851 acctcaacca tggccgccaa gatgaataga gaagctattc tctggaaaaa
1901 tatcaacagt atccctgagg aacctgacct gataaaatca cttgaagttc
1951 tatctatgga acaaaatgat agagaaagag aattagaaca taatctaatc
2001 ctcaacaaac aaatcagtga acaaatccca gaatggatta ttcctgattc
2051 tctttctgaa ttatcttcag gaattgatct aaactttgtt ctcgaagagc
2101 aagaagttaa cgacaacaac agtcaacctt cgctagaaga agaagttgtg
2151 tcagaaagcg acgtagaatc tatgagatcc ttcaacgtag ccatgaatcg
2201 tggagaagtt ggagaatcat ctaataaacg tccaaaaaga gaaccagact
2251 tgtttacaag ttttggaaaa atcagagaag acataggtga caaaaatcct
2301 agtttaaaca ttctaaactt agattgtgtc aatagtcctt ctgataggaa
2351 aaataagatt gacaaatggg ccgcagaact tggcttagtc tttcttacaa
2401 acccagaagc ctatactaca gctcctaatg cagccagagc tagactagct
2451 tacatggaac ataagagctt aggaatagtc aacaggttta ttaaaagtac
2501 ccagtggact caaatgaatg gagacatcct tttaaatgta gtcagcgggt
2551 tatataccat gttcttagga gaagattaca ctggtaatca agaaaaaacc
2601 ctagaacaag aaagggccaa ggctagcctt aggcttatca atttacaact
2651 ttgtgacatt tgctcacttc agtcattttt ctgtgactat gagtcaaatc
2701 tctataagtt accccaaaat gagtacccta gcctagtaaa acaataccta
2751 gctaagatac ccatagttgg agaaaaagcc tcaaaaaggt ttgaggaaga
2801 agctagtgca gcaacaagtt acagtttagg attcgctcat aaactggtta
2851 acgaagagct cgcaaaaatc tgtgaattat caaagaagca gaaaaagtta
2901 aaaaggttta acaagaattg ttgttctacc tttgaaaaac cttatgaata
2951 tggatgcaag ccatcttatt ctaagaagaa aaaatactct aaaaagtata
3001 aacctaaata caccaagtac aaggttatta ggaaaaagaa gaaattttca
3051 ccaggaaaat acttcaaacc aaaggataag aaaagcgaaa aggctaagta
3101 ctgtcctaaa ggaaagaaaa catgccgatg ttgggtatgt aatatagaag
3151 gtcattatgc aaatgaatgt cctaacagac aaacgtctga aaaattcaag
3201 ctaattcaaa tagctgaaaa ctatggacta gaacccatag aaaatcccta
3251 cgaggatcaa caagaaatct gtcttctaga acagatacaa ctatcaagct
3301 cagatagtga attggatgac acttgtgaag aaagttcatc tgaagaatcg
3351 gaatgagtct tagaaatagg acaaacccca attccattta tgtcaaagga
3401 attctcaaat tccctggcta ccaaaccaac ctcgacctac actgttatgt
3451 agacactggc tcaagtttgt gtatggcaag taagtatgtc ataccagaag
3501 aatattggca gactgctgaa aaacctctca atattaagat cgccaatggt
3551 aagatcatac aattgacaaa ggtttgtagc aaactaccaa tacgtttggg
3601 aggagaacga tttctcattc caacattatt ccagcaggaa agcggaatag
3651 atttattgct tggaaacaat ttctgtcagt tatactcacc tttcatccag
3701 tatactgatc gaatttactt tcatcttaac aagcaaagcg ttatcatagg
3751 aaagataaca aaagcatacc aatatggtgt caaaggattc cttgaatcca
3801 tgaaaaagaa gtctaaagtt aataggcctg aaccaattaa cataacttct
3851 aatcaacatc tctttttaga agaggggggg aatcatgtag atgaaatgct
3901 atatgaaatc caaattagca aattttcagc cattgaagaa atgctagaaa
3951 gagttagttc tgaaaatcct atagacccag aaaagtctaa gcaatggatg
4001 acagcaacca tagaactcat agatcctaag acagtagtaa aggtcaaacc
4051 tatgagctac agtcctagtg atagagaaga atttgatagg caaatcaaag
4101 aacttcttga gcttaaggtc atcaaaccta gcaaatccac ccatatgtcc
4151 ccagccttcc ttgttgaaaa tgaagcagag agacgtagag gaaagaaaag
4201 aatggtcgtc aactacaagg ctatgaataa agccacaaaa ggagacgctc
4251 ataatcttcc aaacaaggat gaattactca cccttgtaag aggaaagaag
4301 atttacagct catttgactg taagtcagga ttgtggcaag ttctgctaga
4351 taaagaatcg cagcttttaa ccgcgtttac ttgtccacaa ggtcattacc
4401 aatggaacgt agtacctttc ggtttaaagc aagcaccaag catctttcca
4451 aagacatatg caaacagcca ttccaatcaa tattctaaat attgttgtgt
4501 ctatgtagat gacatcctag tgtttagtaa cacaggaagg aaggaacatt
4551 acattcatgt tcttaacatt ttgagaagat gtgaaaaact tggaataata
4601 ctctccaaga agaaagcaca actcttcaaa gaaaagatta atttcttagg
4651 attagaaatt gatcaaggaa cccattgtcc tcaaaaccat atcttagaac
4701 atattcataa gttcccagat aggatagaag acaaaaagca gttgcagaga
4751 tttctaggaa ttctcacata cgcatctgat tatattccga agctagcctc
4801 tattaggaaa cccttacaga gtaagcttaa agaagattca acatggactt
4851 ggaatgatac tgattctcag tatatggcta agatcaaaaa gaatcttaag
4901 agttttccaa aactctacca ccctgaacct aacgacaaat tagttatcga
4951 aactgatgca tctgaagagt tctggggcgg aattctaaag gctattcaca
5001 atagtcatga gtatatctgt cgatatgctt caggcagttt caaagccgcc
5051 gaaagaaatt accatagcaa cgagaaagag cttctcgcag ttatcagagt
5101 aattaaaaaa ttcagtattt atctaacccc ttcgaggttt ttgattcgta
5151 ctgataataa aaacttcacc cattttgtta atataaactt aaaaggtgat
5201 agaaaacaag gtcggctggt acgatggcaa atgtggttat ctcaatatga
5251 ttttgatgta gaacatattg caggtacaaa gaatgtcttt gcagattttc
5301 tacaagagaa tactctaact aattatgttt agcgttgcag gacattcaga
5351 ggcattaaat tgctatattt agagcttaat cgctcaagat aaacttgttt
5401 atcaggcttg tttagcctca caggtacaat catggaacgt catgaacaga
5451 tactaaaaga aatagctttc ttagagctaa gacttcagtc cctaaaactg
5501 gagttagaat ttgtaagatc ctctggatct gaacaaaaag gaaagatcga
5551 acctttccgc ccaaacagcg aatgttcggc tactccgatg caaacggcaa
5601 tcggtaaaga gtcatcaaat ccgttgatgg ctatcagctt gccaaaagct
5651 gaaaagaagc attctaaggc ttcagaggtt cccagtcctc acaaaactgt
5701 taaggaattt tctgaaattc caaaggactt tttacgtcct aaccagggta
5751 ttcaaatccc taaaaagaat gaagatcact cttcatcttc ttcgaaagaa
5801 gaaaagggaa ttcaaaatcc caaaaaagac ttttatgttg tctacaatgg
5851 tccttatgca ggtatctatg atcattgggg aacagctaaa aaagcaacaa
5901 ataagatacc gggagtatct tataaaaaat tcaaagatat gcttagtgca
5951 agaacttcag cagacattta tacaaatgcc cagtttggag aaaaactcaa
6001 gtatatccca ggagcaacta ctagtcctaa gagttttgca gaagcattaa
6051 ctaccaggcc tagtaatatg aagagtttag gaaaacctaa attcataaaa
6101 atagaagaag atgatgacgt tggattcaat ccagaattcg acttaaagag
6151 ttttctatat atttacaaat acgggcgaaa tctggaagaa gaacattttc
6201 taacagatcg ggcctttacc attgacaaaa aagaaatctc gtatcttaac
6251 tttgtcaaca atagcgatcc agaaggaatt ttggaaagct ttaaagcagg
6301 attagtaaga tttatttacc caagtactaa tcttcaagaa ctaaggttac
6351 tacccaaggt tcttaaatcc tcggtgcaac gttttcgaaa gaaatgcatt
6401 aaggattcag aaaaggaaat cttccttaaa attaagagta caattccttg
6451 ttgggaagac tactacaatg gtcttgatga ttcggtcagt tatcgtccaa
6501 attatctagt acaaattggc atcagcaaag gtgttaacta tcaaccatct
6551 caaaaaatgg aagctgttgt attaaaagaa caatggcaag gcattgcaga
6601 ggaaaaggca attgaattct ttcaagcaat tgaagatatc ctcagcaatg
6651 aaaagatttt tattatctat tgtgatgata gaattctaat ctattcaagt
6701 agtccaaaag aaaggactaa agaagattta atggcaatcc tcaacttcca
6751 atcagaagtt agcagctgca agcttttagg attccatagt gataagatat
6801 gttcttatct aaacaaaaaa gcaagcgtcg gcaaaccata cagctgtcca
6851 caaaaaggaa aggctgtaat aacaagcgga cccagcttct cagtggaaga
6901 tactttatca gacactgaat aatggatgga ccctaccacg attaaagagg
6951 agcgtctgtc taaagtaaag tagatgcgtc tttaataatt catctacttt
7001 agacgtcatg catgacgttt aacatgcatt gtatccagat cctccctggc
7051 tatataaagg gagttaaatt tcattgttaa ggcatcgaaa aaaaaatttc
7101 aagtctatct ctcaagaaaa acttagaaaa ttactttgtc ttaagagtca
7151 tgtgtaacta acttaagagt ggtgtgagag tcattagtaa gagcaagctc
7201 tatgtgttga gcctaagtcc ttgctctaag tttgtaaaga gttatgtata
7251 attatttcat ataaataaga aatcatacag ttcgctacaa tatctcattg
7301 cctgtgaacc tggagtccgt ataaggtgtt cgtaaaccaa gggtgagtac
7351 cgccgaggca ggaggccgta tagggaaaac aggtgttgga acaatcaaac
7401 cttggattgg tcagacagga cagagagtgt ggcaaggtat tggatactgc
7451 ttataatatg aataatttat gcattaactt ttacattctg agctaaggtc
7501 tgaagctaac aatggagttg tgcgtctgaa aatgataact cacatcacat
7551 atttaaaaat atttggtaaa accgaattta aaaagagaaa gtctatgcgt
7601 agatttcaag ctaaaccgca ggttaaataa aaggctttct gcctattatc
7651 tagactgtca cttccacagt caagaaaatt atgagttagc gtgtaatgaa
7701 cgcattaact aatatagtct taattgacat gaatatgcag gagtgctctc
7751 actcttgttt atcttctctt aacgagatat ttaaaagaca acgttcacat
7801 tttcatgagc gttgtaaaga cttccgctgt gagaaagaat ttctcatatt
7851 aaaaaatgct gtttccgccg tcgcagctct ttcagagaga tcaaaaattg
7901 atctttcaaa tcatcaaggg accacccgta ac