Sequence of DPV Tomato black ring virus satellite RNA
Tomato black ring virus satellite RNA gene for 48 kDa protein
ACC No: X05687
Dated: 2008-10-23 | Length: 1376 | CRC: -720594382
ID X05687; SV 1; linear; genomic RNA; STD; VRL; 1376 BP.
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AC X05687; D00144;
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DT 02-APR-1988 (Rel. 15, Created)
DT 23-OCT-2008 (Rel. 97, Last updated, Version 7)
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DE Tomato black ring virus satellite RNA gene for 48 kDa protein
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KW satellite RNA.
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OS Tomato black ring virus satellite RNA
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded RNA satellites; Large single stranded RNA satellites.
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RN [1]
RP 1-1376
RA Hemmer O., Meyer M., Greif C., Fritsch C.;
RT "Comparison of the nucleotide sequences of five tomato black ring virus
RT satellite RNAs";
RL J. Gen. Virol. 68:1823-1833(1987).
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RN [2]
RP 1-1376
RA Fritsch C.;
RT ;
RL Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases.
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CC Data kindly reviewed (15-FEB-1988) by Fritsch C.
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FH Key Location/Qualifiers
FH
FT source 1. .1376
FT /organism="Tomato black ring virus satellite RNA"
FT /serotype="L"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:196089"
FT CDS 15. .1289
FT /product="48 kDa protein"
FT /db_xref="UniProtKB/Swiss-Prot:P22050"
FT /protein_id="CAB59632.1"
FT /translation="MKSYFCVTPTGCLKTHTRPRIVPKHSKKCLRTYSRPRSSLSDSEG
FT WCVVLPRDGGGRKRKADGSQGRPSNNPGRPSRKWTEKTIAAPPQGFFSRRDNGYWVPKS
FT PEKKYVPKNLPRNMDGKKTYKDALTSPAKIQIKPTPESILLAQKIQNSTFKSRGKVTLS
FT QTSLPLVNRFQELQLNTLLEPVEESTPFGVNDKRAQHLFCKKVERKVGRTTMLVCPITG
FT TESHIDVKRGISARIVDSMASVVHTDKLPEYERGHVVIKNVSRTKRVCTPVPFIGTFSD
FT RAIRVECDDHTDELASASSVPSIWKPSKKQHAVPISSSNEMGSAVGTKPDWYTPVKTCT
FT HRQYQKVQRVFLDAMNIMRTLRFHIGPRELRETWVKCWLQVHKKNVAFPGWMITPLLSG
FT TVPCAQEFFLPLAGENRGFVTVCQA"
FT old_sequence 150
FT /note="u was c in [1]"
FT /citation=[1]
FT misc_feature 1302. .1362
FT /note="potential stem-loop structure"
FT repeat_region 1302. .1327
FT /rpt_type=INVERTED
FT /note="imp.inverted repeat A"
FT repeat_region 1341. .1362
FT /rpt_type=INVERTED
FT /note="imp.inverted repeat A'"
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SQ Sequence 1376 BP; 385 A; 326 C; 325 G; 340 T; 0 other;
x05687 Length: 1376 23-OCT-2008 Type: N Check: 2574 ..
1 ttgaaaaaat acagatgaag tcttattttt gtgtaacccc aacaggttgt
51 cttaagactc atactcgacc acgaatagtt cctaagcatt caaagaaatg
101 cctaaggacc tattctcggc cacgctccag cctttctgac tcggaaggct
151 ggtgtgtggt gctcccccgt gacggggggg gccgtaagcg caaggcagac
201 ggtagccagg gccgtccttc aaacaatccc ggtcgtccga gcaggaaatg
251 gacggaaaaa acaattgctg ctcccccgca gggcttcttc agcaggaggg
301 acaatgggta ctgggttccc aagtctccgg agaagaagta tgttccgaag
351 aatcttccta ggaacatgga tggcaagaaa acctataagg atgccttgac
401 ctcccctgcg aaaatccaaa tcaaacccac ccctgaaagt attcttttgg
451 ctcaaaagat acaaaattca accttcaaat ctaggggaaa agtgacactg
501 agccaaactt ctttaccact cgtcaaccgg tttcaggaac tccaattgaa
551 tactcttttg gaacctgttg aagagtccac acccttcggg gttaacgata
601 aacgagcgca acaccttttt tgtaaaaagg tggaacgcaa ggttggacgc
651 acaacaatgt tggtgtgtcc aattacaggt actgagtccc acatagacgt
701 taaacgtggg attagtgcca gaatcgtgga ctccatggcc tcggtagtgc
751 ataccgataa acttcccgaa tatgaacggg gccatgttgt gataaagaac
801 gtctcacgta ccaagagggt atgtacgcca gttcctttca tcggaacttt
851 tagtgatcgc gcaattagag ttgaatgcga cgatcatacc gatgaactgg
901 cctctgcatc tagtgtccct tccatttgga agccctcaaa gaaacagcat
951 gctgtcccca tttcatcttc taatgaaatg ggttcagcag taggcacgaa
1001 accggactgg tacactccgg ttaagacttg cactcatcgc caatatcaga
1051 aagtgcagcg tgtcttcctt gacgccatga acataatgcg taccttgcgt
1101 ttccatatag gaccgcgaga acttcgagaa acatgggtca agtgctggct
1151 acaggtccac aaaaagaatg tggcattccc gggttggatg ataactccgt
1201 tattgtctgg cactgtgcct tgtgcacaag aatttttcct gcctttggca
1251 ggggaaaacc gggggtttgt cacagtttgt caagcctaga gacctgtagg
1301 gtggagtttt taaaggtaca tgatcattca tgtgaaatat aagattgtat
1351 accttttctc cagagcaaat aaatct