Sequence of DPV Tomato black ring virus satellite RNA
Tomato black ring virus satellite RNA gene for 48 kDa protein
ACC No: X05688
Dated: 2008-10-23 | Length: 1372 | CRC: -484185155
ID X05688; SV 1; linear; genomic RNA; STD; VRL; 1372 BP.
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AC X05688; D00143;
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DT 02-APR-1988 (Rel. 15, Created)
DT 23-OCT-2008 (Rel. 97, Last updated, Version 7)
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DE Tomato black ring virus satellite RNA gene for 48 kDa protein
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KW satellite RNA.
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OS Tomato black ring virus satellite RNA
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded RNA satellites; Large single stranded RNA satellites.
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RN [1]
RP 1-1370
RA Hemmer O., Meyer M., Greif C., Fritsch C.;
RT "Comparison of the nucleotide sequences of five tomato black ring virus
RT satellite RNAs";
RL J. Gen. Virol. 68:1823-1833(1987).
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RN [2]
RP 1-1372
RA Fritsch C.;
RT ;
RL Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases.
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CC serotype G was also seqenced and was identical to serotype E
CC except for a substitution at pos. 570 :u(in E) corr. g(in G);
CC the authors cannot rule out an arteficial event and have chosen
CC to to consider sat-RNAs E and G as identical
CC
CC Data kindly reviewed (15-FEB-1988) by Fritsch C.
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FH Key Location/Qualifiers
FH
FT source 1. .1372
FT /organism="Tomato black ring virus satellite RNA"
FT /serotype="E"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:196089"
FT CDS 40. .1299
FT /product="48 kDa protein"
FT /db_xref="UniProtKB/Swiss-Prot:P22049"
FT /protein_id="CAB59631.1"
FT /translation="MQKTMTRHLSRNRKPHEKVSHVPRRGPRTYQDPCDPGWYVVNSRR
FT GVAPQPTPTSGSLGRKPYNPGCPSRKWTKKIIAAPKHGFYSAKDHGYWVPKVQAQKKYN
FT PPRKVVGGGRSYKDVLSTPAKIQIKPTPESILLAQKIQNSTFKSRGKVTLSQEKIPLIN
FT RFQELLIEKELMEDVEESQPFVANDSRAQHLFCKKVLRKVGRREILVCPITNEESHVNL
FT KTGIKARIVDSMGSVVHEENIPAYNRGHVVKSMRKRIVHERESKPIPVIGSFSDRAIRV
FT LCDDHTDELASASSVPSEWKPSKNQRAVPCLLQNESATVVSAKPDWYAPVKVCTHKQYM
FT KVQRVFLDAMFIMRALRFHIDAKILRETWVKCWLQVHRKNVAFPGWMIAPLLSGTVPCE
FT QEFLLPRVNETRAFATVCYA"
FT old_sequence 347. .348
FT /note="au was a in [1]"
FT /citation=[1]
FT old_sequence 708. .709
FT /note="aa was a in [1]"
FT /citation=[1]
FT misc_feature 1312. .1359
FT /note="pot.stem-loop structure"
FT repeat_region 1312. .1330
FT /rpt_type=INVERTED
FT /note="imp.inverted repeat A"
FT repeat_region 1343. .1359
FT /rpt_type=INVERTED
FT /note="imp.inverted repeat A'"
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SQ Sequence 1372 BP; 388 A; 314 C; 326 G; 344 T; 0 other;
x05688 Length: 1372 23-OCT-2008 Type: N Check: 5171 ..
1 cttgaaaata attttgaaag tctctgacaa tcgtaacaga tgcagaagac
51 tatgactcga cacttgtcgc gtaaccggaa accacatgag aaggtttccc
101 atgttccgcg gcgagggcca cgtacctacc aggacccatg tgatcctggt
151 tggtatgtgg taaactctcg taggggagtt gcacctcaac caacacctac
201 tagcggtagt ctgggccgca aaccttataa tcccggttgt ccgagcagga
251 aatggacaaa aaaaataatt gctgccccca agcacggctt ctacagtgca
301 aaagaccatg ggtactgggt tcccaaggtt caggcacaga agaagtataa
351 cccccctcgg aaggttgtag gtggaggaag atcttacaag gatgttcttt
401 ccacccctgc gaaaatccaa attaaaccca cccctgaaag tattcttttg
451 gctcaaaaga tacaaaattc aaccttcaaa tctaggggaa aagtgacact
501 gagccaagaa aagattccac taatcaatcg cttccaagaa ctattaattg
551 aaaaagagct tatggaagat gttgaggaat cccaaccctt tgtggccaac
601 gattcaaggg cgcaacacct tttttgtaaa aaggtgttgc gtaaggttgg
651 acggcgggag atcctcgtct gtccaattac taatgaagag tcacacgtta
701 atctcaaaac tgggattaag gctcggattg tggattccat gggttcggtc
751 gtgcatgaag agaatatacc tgcatataac cgaggccatg ttgtgaaatc
801 gatgcgcaag cgcatcgtgc atgagaggga gagcaagcca attcctgtca
851 tcggatcatt tagtgatcgc gcaattagag tcttatgcga cgatcacacc
901 gatgagttgg cctctgcttc cagtgtccct tccgaatgga agccctctaa
951 gaaccaacga gctgtccctt gcttacttca aaatgagtct gcgacagttg
1001 taagcgcgaa accggactgg tatgcaccgg ttaaggtctg cacccacaag
1051 caatatatga aggtgcagcg cgtcttcctt gacgccatgt tcatcatgcg
1101 tgctcttcgc ttccatatag atgcgaagat acttcgagaa acatgggtca
1151 agtgttggct acaggtccac agaaaaaatg tggcattccc tggttggatg
1201 atagctccgc tattatctgg cactgttcct tgtgaacagg agtttctttt
1251 acctcgtgta aatgagactc gggcgtttgc cacagtgtgc tatgcctaga
1301 gacctgtagg gttgagtttt taaaggtaca tgactttaag attgtatacc
1351 ctttctcaag agcaaattaa tc