Sequence of DPV Tomato black ring virus satellite RNA
Tomato black ring virus satellite RNA gene for 48 kDa protein
ACC No: X05689
Dated: 2008-10-23 | Length: 1374 | CRC: -1665478576
ID X05689; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC X05689; D00142;
XX
DT 02-APR-1988 (Rel. 15, Created)
DT 23-OCT-2008 (Rel. 97, Last updated, Version 6)
XX
DE Tomato black ring virus satellite RNA gene for 48 kDa protein
XX
KW satellite RNA.
XX
OS Tomato black ring virus satellite RNA
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded RNA satellites; Large single stranded RNA satellites.
XX
RN [1]
RP 1-1371
RA Hemmer O., Meyer M., Greif C., Fritsch C.;
RT "Comparison of the nucleotide sequences of five tomato black ring virus
RT satellite RNAs";
RL J. Gen. Virol. 68:1823-1833(1987).
XX
RN [2]
RP 1-1374
RA Fritsch C.;
RT ;
RL Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases.
XX
CC Data kindly reviewed (15-FEB-1988) by Fritsch C.
XX
FH Key Location/Qualifiers
FH
FT source 1. .1374
FT /organism="Tomato black ring virus satellite RNA"
FT /strain="C serotype"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:196089"
FT old_sequence 33. .34
FT /note="au was a in [1]"
FT /citation=[1]
FT CDS 40. .1299
FT /product="48 kDa protein"
FT /db_xref="UniProtKB/Swiss-Prot:P22048"
FT /protein_id="CAB59630.1"
FT /translation="MQKTMTRHLSRNRKPHEKVSHVPRRGPRTYQDPCDPGWCVVNSCR
FT RVAPQPIPTSGSLGRKPLNPGCPSRKWTEKIIAAPKHGFYSAKDHGYWVPKVKVQKKYN
FT PLQKVVGGGKSYKDVLTTPATIQIKPTPESILLAQKIQNSTFKSRGKVTLSQEKIPLVN
FT RFQELLIEKELMEEIEESQPFVANDPRAQHLICKKVPRKVGRREILVCPITNDESHLNL
FT KSGIRAEIVDSMGSVVHAEKIAEYNRGHVVKSMRKRIVYERESKPIPIIGSFSDRAIRV
FT SCDDHTDELASASSVPSEWKPSKNQRAVPCLLQNESGTVVSTKPDWYTPVKVCTHKQYM
FT KVQRVFLDAMNIMRALRFHIDSKTLRETWVKCWLQVHKKNVAFPGWMIAPLLSGTVPCE
FT QEFLLPRVNETRAFVTTCYA"
FT old_sequence 96. .97
FT /note="uu was u in [1]"
FT /citation=[1]
FT old_sequence 792
FT /note="a was u in [1]"
FT /citation=[1]
FT old_sequence 894
FT /note="c was a in [1]"
FT /citation=[1]
FT old_sequence 1167
FT /note="u was c in [1]"
FT /citation=[1]
FT stem_loop 1312. .1361
FT repeat_region 1312. .1330
FT /rpt_type=INVERTED
FT /note="imp.inverted repeat A"
FT old_sequence 1328. .1329
FT /note="uu was u in [1]"
FT /citation=[1]
FT repeat_region 1345. .1361
FT /rpt_type=INVERTED
FT /note="imp.inverted repeat A'"
XX
SQ Sequence 1374 BP; 399 A; 310 C; 318 G; 347 T; 0 other;
x05689 Length: 1374 23-OCT-2008 Type: N Check: 1453 ..
1 tttgaaaata attttgaaag tctctgacaa tcgtaactga tgcagaagac
51 tatgactcga cacttgtcgc gtaaccggaa gcctcatgag aaggtttccc
101 atgttccgcg gcgagggcca cgtacctacc aggatccatg cgatcctggt
151 tggtgtgtgg taaactcttg taggagagtt gcacctcaac caatacctac
201 tagcggtagt ctgggccgca aacctctcaa tcccggctgt ccgagcagga
251 aatggacaga aaaaataatt gctgctccca agcacggctt ctatagtgca
301 aaagaccacg ggtactgggt tcccaaggtc aaagtacaga agaagtacaa
351 ccctctccag aaggttgtag gtggaggaaa atcctataag gatgttctca
401 ccactcctgc tacaatccaa attaaaccca cccctgaaag tattcttttg
451 gctcaaaaga tacaaaattc aaccttcaaa tctaggggaa aagtgacact
501 gagccaagaa aagattccac tggtcaatcg cttccaagaa ctattaattg
551 aaaaagaact tatggaagaa attgaggaat cccaaccctt tgtggctaat
601 gatccaaggg cgcaacacct tatttgtaaa aaggtgccgc gtaaagttgg
651 gcgacgagag atcctcgtct gcccaattac taacgatgag tcacacctta
701 atctcaagtc tgggattagg gctgagattg tggattccat gggttcggtt
751 gtgcatgcag agaaaatagc tgaatataac cgaggccatg tagtgaagtc
801 aatgcgtaag cgcattgtat acgagaggga aagtaagcca attcctatca
851 tcggatcatt tagtgatcgc gcaattagag tctcatgcga cgaccacacc
901 gatgaattgg cctctgcttc cagtgtccct tccgaatgga agccctctaa
951 gaaccaacga gctgtccctt gcttacttca aaatgagtct gggacagttg
1001 taagcacgaa gccggattgg tatacaccgg ttaaggtctg cacccacaag
1051 caatatatga aagtgcagcg tgttttcctc gacgccatga acataatgcg
1101 tgctcttcgt tttcacatag attcgaagac acttcgagaa acatgggtca
1151 agtgttggct acaggttcac aaaaaaaatg tggcattccc tggttggatg
1201 atagctccgc tattgtccgg cactgttcct tgtgaacagg agttcctttt
1251 acctcgtgta aatgagactc gggcgtttgt tacaacgtgc tatgcctaga
1301 gacctgtagg gtggagtttt taaaggtaca tgacctatta agattgtata
1351 ccttttctcc agagcaaatt tatc