Sequence of DPV Figwort mosaic virus
Figwort mosaic virus (FMV) genome
ACC No: X06166
Dated: 2005-04-18 | Length: 7743 | CRC: -522163382
!!NA_SEQUENCE 1.0
ID CAFMVXX standard; genomic DNA; VRL; 7743 BP.
XX
AC X06166;
XX
SV X06166.1
XX
DT 19-AUG-1988 (Rel. 17, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 10)
XX
DE Figwort mosaic virus (FMV) genome
XX
KW complete genome; unidentified reading frame.
XX
OS Figwort mosaic virus
OC Viruses; Retroid viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-7743
RX MEDLINE; 88040466.
RX PUBMED; 3671088.
RA Richins R.D., Scholthof H.B., Shepherd R.J.;
RT "Sequence of figwort mosaic virus DNA (caulimovirus group)";
RL Nucleic Acids Res. 15(20):8451-8466(1987).
XX
CC ORF IV shows homology with retrovirus gag gene and Drosophila
CC retrotransposon copia, ORF V shows homology with avian retroviral
CC gag-specific protease p15.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7743
FT /db_xref="taxon:10649"
FT /mol_type="genomic DNA"
FT /organism="Figwort mosaic virus"
FT /clone="pFMV Sc3"
FT CDS 14. .985
FT /db_xref="GOA:P09520"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/Swiss-Prot:P09520"
FT /note="ORF I (AA 1-323)"
FT /protein_id="CAA29523.1"
FT /translation="MCSTRKTSVMDEKVIENEEIHFQENSNGFSADLTIHQDKLKQISK
FT TGLNLEKEHIFNMPSSLTKAFKTAFKRKNEIFYCVSTKEMSVDIKDVSGQVYLPLITKQ
FT EIQQKLMKIDPSVRSKISMIHLGAVKILLTAQFRQGIDTSVKMALIDDRIVNRKDSLLG
FT AARGNLAYGKFMFTVYPKFALSLQSKNLDKTLSFIHQFERKDLMKTGDKVFTVTYLIGY
FT ALTNSHHSIEYRKNSNIEIEEVFKDIGQIEESPFCDISPIDENWTMDIARNKKSIATGS
FT SSRRNFRIDESLLENKDENLLRSMSTKIDTLGKKLSLIYDNE"
FT CDS 978. .1472
FT /db_xref="GOA:P09521"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="InterPro:IPR001611"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="UniProt/Swiss-Prot:P09521"
FT /note="ORF II (AA 1-164)"
FT /protein_id="CAA29524.1"
FT /translation="MSKDHLDFPHVYKKNKVLKLKPLDLSKNPRSYYFSSQNGSIQAII
FT NHCNNINQITARNWLKLSKVLSYFGLEKDTSDSISKNKSPFNRFLKDISHIFREGEGST
FT KKASELGEILEKIKNLDLKIENLNKRIPDNLVTKALIKELVKDFDERLTEVRDDIKKVI
FT G"
FT CDS 1472. .1819
FT /db_xref="GOA:P09522"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProt/Swiss-Prot:P09522"
FT /note="ORF III (AA 1-115)"
FT /protein_id="CAA29525.1"
FT /translation="MAATLSEIRELIQSLTKTANEIKAMLERNSAGKPTGIEEAAAKII
FT KDIGDKIDQCECTKKIEEMLDQKQNADTQIVPTKQESSGLVKYSYPNWNVGNEELGSSG
FT NPNAVKWPPRK"
FT misc_feature 1529. .1840
FT /note="ORF IX"
FT CDS 1801. .3270
FT /db_xref="GOA:P09519"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProt/Swiss-Prot:P09519"
FT /note="ORF IV (AA 1-489)"
FT /protein_id="CAA29526.1"
FT /translation="MATKKMRISEKLWDSLEKDECNIDEVVQLMSLDEEELITKFAQEV
FT SLRIRYLDEKPNEISFIAEATEDYSEPETESSDEETYFQQIRMERGESSETKREQQDLG
FT ATRKRKIEERNPFYTPPVHKGIPSSTGRGTEISTLNLDCISSFEERKVMIDKWFNEISL
FT IIQTNKESFDTSLKVLTLMEHRTEGIAKSFIKQATWDILITPEKIIEEVLTGFYTMFIG
FT LDYALSAEKEEEKRIKKAEELLIKSQLCNICELDNFTCFYEKQINQLKFEDFPKWIELY
FT LGKIPIIGKQSKERWDNEKSFTTKYSLAFAKRIIQEEIAKYCDFQRTSKKLKNFSKKCC
FT SKNSLDPLVSFGCRDTKKKDFKKSSKYKAYKKKKTLKKLWKKKKRKFTPGKYFSKKKPE
FT KFCPQGRKKCRCWICTEEGHYANECPNRKSHQEKVKILIHGMNEGYYPLEDAYTGNLEV
FT FSMEIIEETTSEEESTTDSDSSSSDDEQLSF"
FT CDS 3248. .5248
FT /db_xref="GOA:P09523"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="InterPro:IPR009007"
FT /db_xref="UniProt/Swiss-Prot:P09523"
FT /note="ORF V (AA 1-666)"
FT /protein_id="CAA29527.1"
FT /translation="MTSSSLFREGELGHFCLNKQEMLHLNVTNPNSIYIEGKLSFEGYK
FT SFNIHCYVDTGASLCIASRYIIPEELWENSPKDIQVKIANQELIKITKVCKNLKVKFAG
FT KSFEIPTVYQQETGIDFLIGNNFCRLYNPFIQWEDRIAFHLKNEMVLIKKVTKAFSVSN
FT PSFLENMKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCSENPIDPIK
FT SKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFL
FT VENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQ
FT VVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDII
FT VFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILE
FT NIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYV
FT KKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQA
FT EKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRW
FT QNWFSKYQFDVEHLEGVKNVLADCLTRDFNA"
FT promoter 5287. .5293
FT /note="put. TATA-box"
FT CDS 5364. .6902
FT /db_xref="GOA:P09524"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="UniProt/Swiss-Prot:P09524"
FT /note="ORF VI (AA 1-512)"
FT /protein_id="CAA29528.1"
FT /translation="MEELKALRLKEKILEIELNSVKMQIHAYEESLKATTVNSVQEGEI
FT LQTESIPECPAQGKETPNPVKADSLLKTILGNERQNPLEGKSSKLVNLTPKSDKDKVKS
FT SPVANGSGKDSTNPLNPVALGKSKMTILGQKQADEEEFKPDYLRAASNGQSWFAVYKGP
FT NKEFFTEWEIVADICKKRQKSKRFRSKEQAEVSISLYNKDIQDPVNFLRPVKLVKEERA
FT AQPLKFKAIAAEQTIQFDEFRQIWEKSRLSDLEDGVQEKFYTNDSASKSTYTFVENAEP
FT YLVHTAFRAGLAKVIYPSPNLQELKWFPEGIVKAIKNFRKKVLNAKDAAIFIKIFSSIP
FT DWVQSTRYEPYHFIQIGIAKTKKELPSSKVCKEEFSVQSLNKVRVQSLQTISQKLQEIN
FT EESSIKVNYCSSTCIMVSKFQKKTSTEDLKLVGIFESNLVNIEQLACGDQTKKEWCRIV
FT RRTYQKHLCLYCKDKADSSSTSGEQNNVEKSCPDSPLTNAYDERSDDHKRIPSI"
FT promoter 5896. .6902
FT /note="put. TATA-box"
FT misc_feature 7064. .7069
FT /note="poly A signal"
FT CDS <7499. .7700
FT /codon_start=2
FT /db_xref="UniProt/TrEMBL:Q65933"
FT /note="ORF VII (AA 1-66)"
FT /protein_id="CAA29529.1"
FT /translation="MPGLTLQQEYILLAHLILQVLEEVKQVQLHSGDFQSLRSLYARLN
FT GLRSHQAHLQARISAVSQHGN"
XX
SQ Sequence 7743 BP; 3012 A; 1339 C; 1399 G; 1993 T; 0 other;
X06166 Length: 7743 May 10, 2005 10:10 Type: N Check: 1358 ..
1 tggtatcaaa gccatgtgct caactagaaa aacatctgta atggatgaaa
51 aggtaattga aaatgaagaa attcatttcc aagaaaattc taatggattt
101 tcagcagatc tcacgatcca tcaagataag ttaaaacaga tttcaaaaac
151 tggtttaaat cttgaaaaag aacatatatt taatatgcct tcttctctta
201 caaaagcttt taaaacagcc tttaaaagaa agaacgaaat attttattgt
251 gtttcaacaa aagaaatgtc agtagatatt aaagatgtct ctggacaagt
301 ttatcttcct cttataacta agcaggaaat acaacaaaag ctgatgaaaa
351 ttgatccatc agtaagaagt aaaatctcaa tgatccacct tggagcagta
401 aagattctac ttacagccca attccggcaa ggaattgata cgtcagttaa
451 aatggcactt atcgatgata gaatcgtcaa tcgaaaagat agtctgctcg
501 gagcagcaag aggtaatctc gcatatggta agtttatgtt taccgtttac
551 cctaaatttg cattgtcatt acaaagcaag aatttagata aaacattaag
601 ctttattcat caatttgaaa gaaaagactt aatgaaaaca ggcgataaag
651 tttttacggt cacataccta ataggatatg ccctgacaaa cagccaccat
701 tctatagaat ataggaaaaa ttccaatatt gaaatagaag aagtctttaa
751 agacataggt caaatagaag aatcaccatt ctgtgatata tctcctatag
801 acgaaaactg gacaatggac attgccagaa acaaaaaatc tatagccaca
851 ggaagtagct ctagaagaaa cttcaggata gacgaaagtt tacttgaaaa
901 caaagacgaa aacctactta ggtctatgtc tacaaaaata gatactctag
951 gtaaaaaact tagtcttatc tacgacaatg agtaaagatc acttagactt
1001 tcctcacgtc tacaaaaaga acaaagttct taagttaaaa cccttagatt
1051 tgtcaaaaaa tcctaggagt tattacttta gcagccaaaa tggtagtatt
1101 caagctatta ttaatcactg caataatatt aatcagataa cagcacgaaa
1151 ctggttaaaa ctaagcaaag tattatcata ttttggtcta gaaaaagaca
1201 ctagtgatag tataagcaaa aataaaagcc cgtttaacag gtttttaaaa
1251 gatatctctc acattttcag agagggggaa ggaagtacta aaaaagcttc
1301 tgaactagga gaaatcttag aaaaaattaa gaatttagac ctaaaaatcg
1351 aaaatcttaa taaaagaata ccagacaact tggtaacaaa agccttaatt
1401 aaggaattag tcaaagactt tgacgaaaga cttacagaag tcagagatga
1451 cattaagaaa gtcataggat aatggcagcc acattatctg aaattcgtga
1501 actcattcaa agtttaacca aaactgctaa tgagatcaaa gctatgcttg
1551 aaagaaattc tgcaggaaaa cctacaggta ttgaagaagc agcggcaaaa
1601 atcatcaaag atattggtga taaaatcgat cagtgcgaat gcacaaagaa
1651 aatcgaagaa atgcttgatc aaaagcaaaa tgcagacaca cagattgtgc
1701 caacaaaaca agagtcctct ggacttgtca aatattcgta cccaaactgg
1751 aatgttggta acgaagaact tggaagctca ggcaacccaa acgcggttaa
1801 atggccacca agaaaatgag aatctcagaa aaactttggg atagtctcga
1851 aaaagacgag tgcaacatcg atgaagttgt acaactcatg agcctcgacg
1901 aggaagagct cataaccaaa tttgcccaag aggtaagttt aagaattagg
1951 tatctagatg aaaaacctaa tgaaatttct tttattgcag aagcaacaga
2001 agactactca gaacccgaga cagagtcatc ggacgaggaa acctatttcc
2051 aacaaataag aatggaaaga ggagaaagta gcgaaacaaa acgagaacag
2101 caagatctcg gagctaccag aaaaaggaaa atagaggaaa gaaatccttt
2151 ctacactcca ccagtacata aaggtatacc cagttccact ggaagaggta
2201 ccgaaatctc tacccttaac ttagattgta tatcaagttt tgaggaaaga
2251 aaagtcatga ttgataaatg gtttaatgaa ataagcttaa tcattcagac
2301 aaataaagaa agttttgaca caagtctaaa agtcttaacc ttaatggaac
2351 ataggactga aggaattgca aaatctttca taaaacaagc aacatgggat
2401 atactcataa cccctgaaaa aattatagaa gaagtgttaa caggcttcta
2451 tacaatgttc attggtttgg actatgcctt atcggcagaa aaagaagaag
2501 aaaaacgtat taaaaaggcg gaagaacttc ttataaaatc tcagctttgc
2551 aatatttgtg aactagataa ttttacttgt ttttacgaaa aacaaatcaa
2601 tcaacttaag tttgaagatt ttcctaaatg gatagaactt tacttaggta
2651 aaatacctat tataggtaag cagtctaaag aaagatggga taatgaaaaa
2701 tctttcacaa caaagtattc tttagcattt gctaaaagga tcattcaaga
2751 agaaatcgct aaatattgtg attttcaaag aacatctaaa aaactaaaaa
2801 attttagtaa aaaatgttgt tcaaaaaata gtcttgaccc tcttgtttca
2851 ttcgggtgca gagacacaaa gaaaaaggat ttcaaaaaat cttctaagta
2901 caaagcttat aagaaaaaga aaacccttaa aaaactctgg aagaaaaaga
2951 aaagaaaatt tacaccaggt aaatatttct ctaaaaagaa accagaaaaa
3001 ttctgtccgc aaggaaggaa aaaatgcagg tgctggattt gcactgaaga
3051 aggacattat gcaaatgagt gtccaaatag aaaaagccac caagagaagg
3101 taaaaattct tatacatggc atgaacgagg gatactaccc tctagaggac
3151 gcctacacag gtaatctcga ggtattttca atggaaatca ttgaagaaac
3201 aacctcagaa gaagaatcca caacagattc tgattcatca tcgtcagatg
3251 acgagcagct ctctttttag agagggggag ttaggacatt tttgtcttaa
3301 caaacaggaa atgttacatt taaacgtaac aaatccaaat tcaatttata
3351 ttgaaggtaa actatccttt gaaggataca aatcatttaa cattcactgt
3401 tatgttgata caggtgccag tctatgcatt gcatcaaggt acattatacc
3451 agaagaactt tgggaaaatt caccaaagga cattcaggta aaaattgcaa
3501 accaggagct gataaagatc actaaggtat gcaaaaacct caaggtaaaa
3551 ttcgcaggta aatccttcga aatacctaca gtataccagc aggaaacagg
3601 tattgatttc ttaatcggta acaacttctg cagattatac aacccgttca
3651 tacaatggga agatagaata gcttttcacc taaaaaatga aatggttcta
3701 atcaaaaaag ttactaaagc cttttcggtc agtaacccat catttttaga
3751 aaacatgaaa aaagattcta aaactgaaca aattccggga acaaatattt
3801 caaagaatat tatcaaccca gaagaaaggt attttctaat tacagaaaaa
3851 tatcaaaaaa tagaacaatt actagacaaa gtatgttcag aaaatcctat
3901 agaccctatt aagtctaaac aatggatgaa agcatcaatt aaattaattg
3951 atccgctaaa agttattagg gtaaaaccta tgagctacag tccacaggac
4001 agggaaggat ttgccaaaca aattaaggaa ctccttgatt taggtctaat
4051 tatacccagt aaatcccaac atatgtcacc agccttccta gttgaaaatg
4101 aagcagaaag acgtaggggt aaaaagagaa tggttgtaaa ttataaagca
4151 atcaatcagg ctactattgg agatagtcac aatctaccta acatgcagga
4201 attacttaca ttactgcgag gtaaaagcat cttttccagt tttgactgta
4251 aaagtggatt ttggcaggta gttcttgacg aagaaagcca aaagcttaca
4301 gctttcacgt gcccacaagg acatttccag tggaaagtgg tcccattcgg
4351 cctaaagcaa gcaccaagca tatttcaaag acatatgcag acagccttaa
4401 atggcgcaga taagttttgt atggtttacg ttgatgatat catcgttttc
4451 agtaattcag aacttgatca ctataaccat gtttatgcag ttttaaaaat
4501 tgtagaaaaa tatggaataa tcctttcaaa aaagaaagct aatcttttta
4551 aggaaaaaat caattttcta ggactagaaa ttgacaaagg gacacattgt
4601 ccacaaaatc atattttgga aaacattcat aaatttccag atagattaga
4651 agataaaaaa catcttcaga gatttttagg agtacttaca tatgccgaga
4701 catatattcc taaactcgca gaaattagga aacctttaca ggttaaacta
4751 aaaaaggatg taacctggaa ttggacacaa tctgattcag attacgtaaa
4801 aaagataaag aaaaacctag gatcatttcc taagctttac ttacctaaac
4851 cagaagatca tctcattatt gaaacagatg catctgatag tttttggggc
4901 ggtgtcctaa aagcaagagc gcttgacggt gttgaattaa tttgcaggta
4951 tagttcagga agcttcaaac aagcagaaaa gaattatcac agcaatgata
5001 aagaattact agcagtcaag caagtaatca ccaagttttc agcttaccta
5051 acaccagtca ggtttacagt aagaactgat aacaaaaatt ttacttattt
5101 ccttagaatt aatcttaaag gtgatagtaa acaaggacga ttagtccgtt
5151 ggcaaaattg gttcagcaag tatcaatttg atgtcgaaca tcttgaaggt
5201 gtaaaaaacg ttttagcaga ttgcctcacg agagatttta atgcttaaaa
5251 acgtaagcgc tgacgtatga tttcaaaaaa cgcagctata aaagaagccc
5301 tccagcttca aagttttcat caacacaaat tctaaaaaca aaatttttta
5351 gagaggggga gtgatggaag aattaaaggc cttgcgccta aaagaaaaaa
5401 ttctagaaat agaattaaat tctgtaaaaa tgcagattca tgcttatgag
5451 gaaagcctca aagccacaac tgttaattca gtacaggaag gagaaatcct
5501 acaaactgaa tctattcctg agtgtccggc tcaaggtaaa gaaacaccaa
5551 atccggtgaa agctgatagt ttgctaaaaa ctattcttgg taatgaacgc
5601 cagaatcctc ttgaaggaaa aagttcaaag ttggttaatt taacaccaaa
5651 atccgacaag gataaagtta aatctagtcc ggttgcaaac ggctccggta
5701 aagactcaac aaatccgttg aaccctgttg ctttgggaaa aagcaaaatg
5751 actattctcg gtcaaaaaca agctgatgaa gaagagttca agcctgatta
5801 tctcagagca gcctctaatg gtcagtcatg gtttgcagta tataaaggcc
5851 caaacaagga gtttttcact gaatgggaaa ttgttgctga tatttgcaag
5901 aaacgacaaa agtctaaaag attccgatca aaggagcaag ctgaagtgtc
5951 tatcagtctt tacaacaaag acatccaaga cccagtaaat tttctaagac
6001 cagtcaaact agtcaaagaa gaaagagcag cacagccatt gaagttcaag
6051 gccattgcag cagaacaaac catacaattt gatgagtttc gtcagatatg
6101 ggaaaaatca agactttcag atcttgaaga tggtgtacaa gaaaagttct
6151 acaccaacga ttcagcaagc aaaagtacat acacttttgt tgaaaacgca
6201 gaaccttatc tggttcacac agcattccga gcaggattag ccaaggtcat
6251 ctatccgagt cctaacctac aggaactaaa atggttccca gaaggaattg
6301 ttaaagcaat taaaaacttt cgaaaaaagg ttttaaatgc aaaagatgca
6351 gctatattca tcaaaatatt tagcagcatt ccagattggg ttcaatcaac
6401 aaggtacgag ccatatcact ttattcaaat tggtatcgcc aaaaccaaga
6451 aggaactccc atcctcaaag gtttgtaagg aagaattctc agtccaaagc
6501 ctcaacaagg tcagggtaca gagtctccaa accattagcc aaaagctaca
6551 ggagatcaat gaagaatctt caatcaaagt aaactactgt tccagcacat
6601 gcatcatggt cagtaagttt cagaaaaaga catccaccga agacttaaag
6651 ttagtgggca tctttgaaag taatcttgtc aacatcgagc agctggcttg
6701 tggggaccag acaaaaaagg aatggtgcag aattgttagg cgcacctacc
6751 aaaagcatct ttgcctttat tgcaaagata aagcagattc ctctagtaca
6801 agtggggaac aaaataacgt ggaaaagagc tgtcctgaca gcccactcac
6851 taatgcgtat gacgaacgca gtgacgacca caaaagaatt ccctctatat
6901 aagaaggcat tcattcccat ttgaaggatc atcagatact gaaccaatat
6951 ttctcactct aagaaattaa gagctttgta ttcttcaatg agaggctaag
7001 accctaaaga gtttcgaaag agaaatgtag tatagtaaga gtcctcccag
7051 tccgggagat tgtaataaag agatcttgta atggatccaa gtgtctgtaa
7101 tttttggaaa aattgatcta taaaatattc aatctttctt taagcttatt
7151 caaagaacaa acatactatc tatcatccaa atccacagag tgacagagag
7201 aaaatggtct gtgttgtgtg gatctgaagt accgccgagg caggaggccg
7251 ttagggaaaa agggactgtt ttgaccgtca aagtatcagg ctggctctag
7301 gaaggaagat gaagatatca ggtattggtt tatgttctaa aaaataagta
7351 ataaagaaaa aagtttatta aaaagaaaat tttatcaaga gcaaattaca
7401 tgtctagagg atacctagat ctatattaca ataatcttac ttacatgttt
7451 tatttcgtga ctctaaatta aaaaattgtt taattgttta ttcaaaacaa
7501 tgccaggact aaccctccag caagagtata tactcttagc acaccttatt
7551 cttcaggtac tcgaagaagt caagcaggta caactgcatt caggagactt
7601 ccagtctctc agaagtctat atgctaggct taacgggctt cggtcacacc
7651 aagctcatct ccaagcgaga atttcagctg tttctcaaca cggcaattga
7701 agcgtcatga acttcaagaa aatctcggat cccgtccgca ttc