Sequence of DPV Turnip yellow mosaic virus
Turnip yellow mosaic virus genome
ACC No: X07441
Dated: 1993-09-12 | Length: 6318 | CRC: -1589671362
!!NA_SEQUENCE 1.0
ID TYMVXX standard; RNA; VRL; 6318 BP.
XX
AC X07441;
XX
SV X07441.1
XX
DT 22-NOV-1988 (Rel. 18, Created)
DT 12-SEP-1993 (Rel. 36, Last updated, Version 4)
XX
DE Turnip yellow mosaic virus genome
XX
KW genome; overlapping genes; unidentified reading frame.
XX
OS Turnip yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirus.
XX
RN [1]
RP 1-6318
RA Morch M.;
RT ;
RL Submitted (22-APR-1988) to the EMBL/GenBank/DDBJ databases.
RL M Morch, Institut Jacques Monod, CNRS Universite Paris VII, 2 Place
RL Jussieu, F 75251 Paris, France.
XX
RN [2]
RP 1-6318
RX MEDLINE; 88289359.
RA Morch M.D., Boyer J.C., Haenni A.L.;
RT "Overlapping open reading frames revealed by complete nucleotide sequencing
RT of turnip yellow mosaic virus genomic RNA";
RL Nucleic Acids Res. 16:6157-6173(1988).
XX
DR SWISS-PROT; P03608; COAT_TYMV.
DR SWISS-PROT; P10357; V70K_TYMV.
DR SWISS-PROT; P10358; POLR_TYMV.
XX
CC Data kindly reviewed (19-DEC-1988) by MORCH M.-D.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6318
FT /db_xref="taxon:12154"
FT /organism="Turnip yellow mosaic virus"
FT CDS 88. .1974
FT /db_xref="SWISS-PROT:P10357"
FT /note="69K ORF (AA 1-628)"
FT /protein_id="CAA30321.1"
FT /translation="MSNGLPISIGRPCTHDSQRSLSAPDSRIHSGFNSLLDTDLPMVHS
FT EGTSTPTQLLRHPNIWFGNLPPPPRRPQDNRDFSPLHPLVFPGHHSQLRHVHETQQVQQ
FT TCPGKLKLSGAEELPPAPQRQHSLPLHITRPSRFPHHFHARRPDVLPSVPDHGPVLXET
FT KPRTSVRQPRSATRGPSFRPILLPKVVHVHDDPPHSSLRPRGSRSRQLQPTVRRPLLAP
FT NQFHSPRQPPPLSDDPGILGPRPLAPHSTRDPPPRPITPGPSNTHXLRPLSVLPRXSPR
FT RGLLPNPRRHRTSTGHIPPTTTSRPTGPPSRLQRPVHLYQSSPHTPNFRPSSIRKDALL
FT QTGPRLGHLERLGQPANLRTSERSPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRPY
FT PLLPNPPAALPSIAYTSSRGKIHHSLPKGALPKEGAPPPPRRLPSPAPRPQLPLRDLGR
FT TPGFPTPPKTPTRTPESRITASPTDIAPLDSDPVLSVRTEVHAPERRTFMDPEALRSAL
FT ASLPSPPRSVGIIHTAPQTVLPANPPSPTRHLPPTSPPWILQSPVGEDAIVDSEDDSIS
FT SFHSHDFDSPSGPLRSQSPSRFRLHLRSPSTSSGIEPWSPASYDYGSAPDTD"
FT CDS 95. .5629
FT /db_xref="SWISS-PROT:P10358"
FT /note="206K ORF (AA 1-1844)"
FT /protein_id="CAA30322.1"
FT /translation="MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKE
FT LLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLA
FT QVNSNFRELKNYRLHPNDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNL
FT ERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRIN
FT SIRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQAPPTLMXSDLFRSYQEPRLDVV
FT SFRIPDAIELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKP
FT DHDWVTSNAWDNLQTFALLNVPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILS
FT FLTLLQRFLPLPIPLAEVKSITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRP
FT ASPPHQKLPHALQKAALLLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQA
FT SLVLLALSESSILLHKLFSPPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPF
FT TPTTSTAPPDRSEASLPPAFASTFVPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQN
FT SDLALESSTSTEPPPPPIRSPDXTPSAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPL
FT SIPHQDPTDSADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELH
FT PRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQL
FT SNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFS
FT PGKRLLGSQPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNG
FT FDGVLSLLDVSTGQRTGPXPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQL
FT LKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMP
FT RGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSY
FT RIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQ
FT GLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMXPSSYVGGTNGSSAMFSDAFN
FT NSLIIMDRYFPSLFPQLKLITSPLTTRGPKLNGATPSASPTHRSPNFHLPPHIPLSYDR
FT DFVTVNPTLPDQGPETRLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYP
FT GEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP
FT TLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAEC
FT ISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLA
FT LMHDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDY
FT TAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYD
FT DNTDYNLAVIYSQYDVGSCPIMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHP
FT LFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPE
FT THVQYQSACFDFFCRRCPRHEKMLLDDSTPALSLLERITSSPRWLTKNAMYLLPAKLRL
FT AITSLSQTQSFPESIEVSHAESELLHYVQ"
FT misc_feature 5630. .6049
FT /note="221Krt ORF (AA 1-140)"
FT CDS 5644. .6213
FT /db_xref="SWISS-PROT:P03608"
FT /note="CP ORF (AA 1-189)"
FT /protein_id="CAA30323.1"
FT /translation="MEIDKELAPQDRTVTVATVLPAVPGPSPLTIKQPFQSEVLFAGTK
FT DAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPAFPTTVGVCWVPANSPVTP
FT AQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPKLLISITAQPTA
FT PPASTCIITVSGTLSMHSPLITDTST"
XX
SQ Sequence 6318 BP; 1443 A; 2488 C; 1078 G; 1300 T; 9 other;
X07441 Length: 6318 December 21, 2001 16:01 Type: N Check: 1772 ..
1 gtaatcaact accaattcca gctctctttt gacaactggt cttataccca
51 cttccgtaca cttgcaaccc tcgtaagaca attgcaaatg agtaatggcc
101 ttccaattag cattggacgc ccttgcaccc acgactcaca gagatccctc
151 tctgcacccg attctcgaat ccacagtgga ttcaattcgc tcctcgatac
201 agacctaccc atggtccatt ccgaaggaac ttctacccct actcaactcc
251 tacggcatcc caacatctgg tttgggaacc tcccaccacc cccacgccgc
301 ccacaagaca atcgagactt ttctcctttg cacccactgg tctttccagg
351 ccaccactcc cagctccgtc atgttcatga aacccagcaa gttcaacaaa
401 cttgcccagg taaactcaaa ctttcgggag ctgaagaact accgcctgca
451 ccccaacgac agcactcgtt accccttcac atcaccagac cttcccgttt
501 tccccaccat tttcatgcac gacgccctga tgtattacca tccgtcccag
551 atcatggacc tgttcttrcg gaaaccaaac ctcgaacgtc tgtacgccag
601 cctcgtagtg ccacccgagg cccatctttc cgaccaatcc ttctacccaa
651 agttgtacac gtacacgacg acccgccaca ctcttcacta cgtcccagag
701 ggtcacgaag ccggcagcta caaccaaccg tccgacgccc actcttggct
751 ccgaatcaat tccattcgcc tcggcaacca ccacctctca gtgacgatcc
801 tggaatcctg gggccccgtc cactcgctcc tcattcaacg agggaccccc
851 ccccccgacc catcactcca ggcccctcca acactcatgr cctcagacct
901 ctttcggtct taccaagarc ctcgcctcga cgtggtctcc ttccgaatcc
951 ccgacgccat cgaacttcca caggccacat tcctccaaca accacttcga
1001 gaccgactgg tcccccgagc cgtctacaac gccctgttca cctataccag
1051 agcagtccgc acactccgaa cttcagaccc agcagcattc gtaaggatgc
1101 actcctccaa accggaccac gattgggtca cctcgaacgc ctgggacaac
1151 ctgcaaacct tcgcacttct gaacgttccc ctccgaccaa acgtcgtcta
1201 ccacgttctt cagagcccaa tcgcctccct aagcctttac ctgaggcaac
1251 attggcgccg tcttaccgcc accgccgtcc ctatcctctc cttcctaacc
1301 ctcctgcagc gcttccttcc attgcctata cctctagcag aggtaaaatc
1351 catcacagcc ttccgaaggg agctttaccg aaagaaggag ccccaccacc
1401 ccctcgacgt cttccatctc cagcaccgcg tccgcaacta ccactccgcg
1451 atctcggccg tacgcccggc ttccccaccc caccaaaaac tcccacacgc
1501 actccagaaa gccgcattac tgcttctccg accgatatcg cccctcttga
1551 cagcgacccc gttctttcgg tccgaacaga agtccatgct cccgaacgcc
1601 gaactttcat ggaccctgaa gcgcttcgct ctgccctggc aagcctccct
1651 agtcctcctc gctctgtcgg aatcatccat actgctccac aaactgttct
1701 ccccgccaac cctccaagcc caacacgaca cctaccaccg acatctccac
1751 cctggatcct acagtctcca gtgggagagg acgccattgt cgattccgag
1801 gacgacagca tttcttcctt tcactcccac gacttcgaca gcccctccgg
1851 accgctccga agccagtctc cctcccgctt tcgcctccac cttcgttccc
1901 cgtccacctc cagcggcatc gagccctgga gcccagcctc ctacgactac
1951 ggcagcgccc ccgacaccga ttgaacccac ccaacgcacc catcaaaatt
2001 ctgacctcgc gctcgaaagt tcaacctcaa ccgaacctcc cccacccccc
2051 atccgatccc ccgacaygac gccctccgcc cccgtccttt tcccagaaat
2101 caactcacct cgtcgttttc ccccccaact tcccgccacg cccgatctcg
2151 aacccgccca cactccaccc cctctttcca tcccgcacca agatccgact
2201 gactcagcgg accccctcat gggctcccac cttttgcacc attcactgcc
2251 tgcacccccc acccaccccc ttccatcttc acagctgtta cccgcacctt
2301 taacgaacga ccccactgcg atcggcccgg tgctcccctt tgaagaactc
2351 cacccacgca ggtaccctga aaacaccgcc actttcctca cgaggctccg
2401 ttcactccca tcaaaccatc ttccacaacc caccttgaat tgtcttctct
2451 ccgctgtctc cgaccaaacc aaggtttccg aggagcacct ctgggagtcc
2501 ctacagacaa ttctcccaga cagccaactc agcaatgaag agaccaacac
2551 tctcgggctt tcaactgaac acctcactgc gttggcccac ctttacaact
2601 tccaggcaac cgtttactcc gatcgcggcc ccatcctctt cggcccctcc
2651 gacaccatca agaggataga catcacccac accaccggac cgccatccca
2701 cttttcaccc ggcaaaagac tcctaggcag ccaaccctcc gctaagggcc
2751 atccctccga cccactcatc agagccatga agtctttcaa agtatccggc
2801 aactaccttc ccttctctga ggcccacaac catcccacct ccatctcaca
2851 cgccaagaac ttgatttcaa acatgaagaa tggtttcgac ggcgtcctct
2901 ccctcctcga cgtctccacg ggccaacgaa ccggacccrc ccccaaagaa
2951 cggatcatcc agatagacca ctaccttgac accaaccccg gcaaaaccac
3001 tcctgtggtg catttcgctg gcttcgctgg ctgtgggaag acatatccga
3051 tccaacagct cctcaaaacc aaactgttca aagacttccg ggtctcttgc
3101 cctaccacag aactcagaac cgaatggaag acagcgatgg aactccacgg
3151 ctcccagtca tggcgcttta acacttggga gtcttccatt ctcaagtcat
3201 ccagaatcct ggtcattgat gagatctaca aaatgccaag agggtacctc
3251 gacctttcca tcctcgccga ccccgccctc gagctcgtca taattctcgg
3301 cgatcctctm cagggcgagt accactccca atcgaaagac tcatccaacc
3351 accgccttcc ctctgaaact ctcaggctgc taccatacat cgacatgtac
3401 tgctggtgga gttaccgcat tcctcaatgc atcgcccgac tcttccaaat
3451 tcacagcttc aatgcctggc aaggagttat cgggtccgtt tccactcccc
3501 atgatcaatc ccccgtcctc accaacagtc atgcctcatc tcttaccttc
3551 aacagcctgg gatatcgctc ctgcacgatc agctctagcc aaggcctcac
3601 attctgcgac cccgccataa tcgtcctgga caactacacc aagtggctct
3651 cctcggctaa cggcctcgtc gccctcactc gatccagatc aggcgtccaa
3701 ttcatgkgcc cctcttccta cgtcggggga accaacggct cttccgccat
3751 gttttccgac gccttcaaca acagcctcat catcatggat cgctacttcc
3801 catccctgtt cccgcaactc aagctcatca cctcccccct cacaactcgc
3851 ggccccaaac tcaacggggc cacccccagc gcatccccca cccaccgttc
3901 gccaaacttc caccttcccc cacacattcc gctctcctat gatcgtgatt
3951 ttgttacggt gaacccaact ctccccgacc aaggacccga aacaagactc
4001 gacacccact ttctcccacc gtctcggctc cctctccatt tcgatctccc
4051 accggctatc accccacccc cggtttccac aagcgtcgac ccgccacaag
4101 cgaaagctag ccccgtctac ccaggcgagt tcttcgattc tctggcggcg
4151 ttcttcttac cagcacacga cccatcaaca agggaaatac tccacaaaga
4201 tcaatctagc aaccagttcc cctggttcga ccgacccttc agcctgtcct
4251 gccagccctc aagtctgatt tccgccaagc atgcacccaa ccatgatccg
4301 acccttctac cggcctccat caacaaacgc ttgcgattca gacccagtga
4351 ctcaccgcac caaatcaccg cggacgacgt ggtcctaggc ctgcaactct
4401 ttcactctct ttgtcgcgcc tactcacgtc aacccaacag caccgttcca
4451 ttcaaccctg aacttttcgc agaatgcatc tctctgaatg agtacgcaca
4501 gctcagttcc aaaacccaat ccaccatagt ggccaacgct tcacgctccg
4551 acccagactg gcgacacacc accgtcaaga tcttcgcgaa agcccaacac
4601 aaagtcaacg acggctccat cttcggctcg tggaaagcct gccagaccct
4651 cgcactcatg cacgactacg tgattctggt tcttggaccc gtcaagaaat
4701 accagagaat cttcgacaac gctgaccggc cacctaacat ctactcacac
4751 tgcggcaaga cacccaacca acttcgagat tggtgccagg aacatctcac
4801 tcattccacc cccaaaatcg caaacgacta caccgctttc gaccagtccc
4851 agcatggaga atccgtggtc cttgaagccc tcaaaatgaa gagactgaac
4901 attccragcc atctgattca gctccacgtc cacctcaaga ccaacgtctc
4951 cacccagttc ggccccctca catgcatgcg cctaaccggg gaacccggaa
5001 cttacgacga caacactgac tataacctcg cagtcatcta ctcccagtat
5051 gacgtcggtt cctgccccat catggtttct ggcgacgact cactcataga
5101 ccaccccctt cccactcgcc acgactggcc atccgttctc aaacgcctcc
5151 acctccgctt caaacttgaa ctcacctctc accccctctt ctgtggctac
5201 tacgtcggtc cagccggctg catccgcaac cccctggccc ttttctgcaa
5251 gctcatgatc gccgtggacg acgacgccct cgacgaccga cgactcagct
5301 acctcaccga gttcaccacc ggacacctcc ttggcgaatc actgtggcac
5351 ctcctccctg aaacccatgt tcagtatcag tcagcctgct ttgacttctt
5401 ctgcaggcgg tgcccaagac acgagaaaat gctcctcgac gactccacac
5451 ccgcactcag cctcctcgaa cgaatcactt cttcgccgag gtggctcacc
5501 aaaaatgcca tgtacctcct ccctgccaag ctacgactgg ccatcacctc
5551 tctatctcaa acgcagtcct tcccagaatc catcgaggtt tcccacgctg
5601 agtctgaatt gcttcactac gtccaatagc aatcagcccc aacatggaaa
5651 tcgacaaaga actcgccccc caagaccgca ccgtcaccgt cgccaccgtc
5701 ctaccagctg tccccggccc atcacctctc accatcaaac aaccgttyca
5751 gtctgaagtt ctatttgctg gaaccaaaga tgccgaggct tctctcacca
5801 tcgccaacat cgacagcgtt tccaccctca ccaccttcta ccgtcatgca
5851 tctctggaat cactctgggt cactatccat cccaccttgc aagccccagc
5901 tttcccgacc acggtcggtg tctgctgggt acccgccaat tctccagtca
5951 ctcccgccca aatcaccaag acctatggtg gccagatctt ctgcattggc
6001 ggcgccatca acaccctctc acctctcatc gtcaagtgcc cacttgaaat
6051 gatgaacccc cgggtcaagg attcgattca gtaccttgac tcgcccaaac
6101 tcctcatctc catcaccgct caacccaccg ctccccccgc atcgacctgc
6151 ataataactg tatcaggaac tctctcgatg cactctccgc tcatcacgga
6201 cacttccacc taagttctcg atctttaaaa tcgttagctc gccagttagc
6251 gaggtctgtc cccacacgac agataatcgg gtgcaactcc cgcccctctt
6301 ccgagggtca tcggaacc