Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV genomic RNA
ACC No: X07653
Dated: 2006-11-14 | Length: 5677 | CRC: -847971020
ID X07653; SV 1; linear; genomic RNA; STD; VRL; 5677 BP.
XX
AC X07653;
XX
DT 16-JUL-1988 (Rel. 16, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 13)
XX
DE Barley yellow dwarf virus - PAV genomic RNA
XX
KW coat protein; genome; RNA polymerase; unidentified reading frame.
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5677
RA Miller W.A.;
RT ;
RL Submitted (16-MAY-1988) to the EMBL/GenBank/DDBJ databases.
RL Miller W.A., CSIRO, Division of Plant Industry, GPO Box 1600, Canberra
RL A.C.T. 2601, Australia.
XX
RN [2]
RX PUBMED; 3399386.
RA Miller W.A., Waterhouse P.M., Gerlach W.L.;
RT "Sequence and organisation of barley yellow dwarf virus genomic RNA";
RL Nucleic Acids Res. 16(13):6097-6111(1988).
XX
CC Authors suggest the occurence of
CC a 99K "transframe" protein, a fusion of the preceding 39K protein
CC and the 50K. The "stop" is read through by a translational frame
CC shift.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5677
FT /organism="Barley yellow dwarf virus - PAV"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /db_xref="taxon:12040"
FT misc_feature 1101. .1202
FT /note="pot. frame shift region"
FT CDS 2858. .3460
FT /product="coat protein"
FT /db_xref="GOA:P09510"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/Swiss-Prot:P09510"
FT /protein_id="CAA30493.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANFVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASANTAGAIFIELDTACKQSALGSYINSFTISKTASKTFRSEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2901. .3362
FT /gene="17K ORF"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/Swiss-Prot:P09513"
FT /protein_id="CAA30494.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPI
FT RQALSLLSSTPRASNQPWVATLIPSPSARPPPRPSGQRQLMGRNSRNQR"
FT CDS 3461. .4813
FT /transl_except=(pos:3461. .3463,aa:Met)
FT /gene="50K ORF"
FT /db_xref="GOA:P09516"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/Swiss-Prot:P09516"
FT /protein_id="CAA30495.2"
FT /translation="MDSSTPEPKPAPEPTPTPQPTPAPQPTPEPTPAPVPKRFFEYIGT
FT PTGTISTRENTDSISVSKLGGQSMQYIENEKCETKVIDSFWSTNNNVSAQAAFVYPVPE
FT GSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSSGDNWGVGNYKGCSFKNFLATNTW
FT RPGHKDLKLTDCQFTDGQIVERDAVMSFHVEATGKDASFYLMAPKTMKTDKYNYVVSYG
FT GYTNKRMEFGTISVTCDESDVEAERITRHAETPIRSKHILVSERYAEPLPTIVNQGLCD
FT VKTPEQEQTLVDEDDRQTVSTESDIALLEYEAATAEIPDAEEDVLPSKEQLSSKPMDTS
FT GNIIPKPKEPEVLGTYQGQNIYPEDVPPMARQKLREAANAPSTLLYERRTPKKSGNFLS
FT RLVEANRSPTTPTAPSVSTTSNMTREQLREYTRIRNSSGITAAKAYKAQFQ"
FT misc_feature 4621. .5160
FT /note="highly variable region"
FT CDS 4920. .5111
FT /gene="6.7K ORF"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/Swiss-Prot:P09517"
FT /protein_id="CAA30496.1"
FT /translation="MEDLHVIAVCILALTVLSGVGAVLSCCRWCCSNPFPPSLSSVQAK
FT DSRSVRETIKNIEGASAQ"
FT CDS 5309. .5476
FT /gene="6.0K ORF"
FT /db_xref="UniProtKB/Swiss-Prot:P09518"
FT /protein_id="CAA30497.1"
FT /translation="MYTRSSGLKTLKLDDLVQVVKLTRVDTPHPAQHVGIPTIRNVGLL
FT EPLPVMQGRV"
FT CDS join(142. .1101,1158. .2744)
FT /product="RNA directed RNA polymerase"
FT /db_xref="GOA:P09505"
FT /db_xref="UniProtKB/Swiss-Prot:P09505"
FT /protein_id="CAA30498.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEVKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNATLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQLEGLCTASGFESPFPILGLP
FT EIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNALVAVERRVFTVGKGDKAIYP
FT PRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSAGKRAMYHKAIASLKTVPYH
FT QKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTRLKFNEKKIMHAIDSVFGSP
FT TVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVSEQALKWEHGIYNGIFGDSE
FT MALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMGNKLIMCGMMHAYLKKLGVE
FT AELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEKPVYELEQLEFCQSKPVSIN
FT GKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRS
FT SGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRMSYWESFGVDPKIQQIVERY
FT YDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY"
FT intron 1102. .1157
FT /number=1
FT exon 142. .1101
FT /number=1
FT exon 1158. .2744
FT /number=2
XX
SQ Sequence 5677 BP; 1674 A; 1360 C; 1392 G; 1250 T; 1 other;
x07653 Length: 5677 14-NOV-2006 Type: N Check: 6329 ..
1 ngtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta
51 cgcgcccgtt ttgtattcgg gaagtagttg cgaaaacggt ccccttattg
101 cctgacaagc taagggccac ccttctttcc ccaccgccat catgtttttc
151 gaaatactaa taggtgctag cgccaaggcg gtcaaagact tcattagcca
201 ttgctattct agattgaaat ctatatacta ttctttcaag cgatggctaa
251 tggagatatc agggcaattt aaggcccacg acgcctttgt caacatgtgc
301 tttgggcaca tggctgacat tgaggacttc gaggcggaac tcgctgagga
351 gttcgccgag agggaggatg aggtggaaga ggcgaggagc ctcttgaaac
401 tgctggtcgc ccaaaaatct aaatctgggg tgaccgaggc ttggaccgac
451 ttttttacaa agtcgagagg tggtgtttac gcaccacttt cctgcgagcc
501 taccaggcag gagctagaag tcaagagtga gaaactcgag cgacttctag
551 aagagcagca ccaatttgag gtgcgagcgg ccaagaaata catcaaggaa
601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgga gtcgtctcag
651 gttggtgaag gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg
701 ccaagattgg agcagaaatg ttcgcccctg ttgacgtgca ggacctctac
751 agtttcacgg aggtcaagaa ggtggagacc ggcctcatga aggaggtcgt
801 gaaagagaaa aacggcgaag aagagaaaca cctcgaaccc atcatggaag
851 aggtgaggtc catcaaggac accgccgaag ccagggacgc cgcctccact
901 tggataacag agacagttaa gctgaagaac gcaacgctta acgcagatga
951 actgtctctt gccaccatcg cccgctacgt tgaaaacgta ggggacaagt
1001 tcaaactcga cattgctagt aaaacatatc taaagcaagt cgcatcgatg
1051 tctgtaccaa ttccaaccaa caaagacatc aaattgaaga tggtgctaca
1101 gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc
1201 ctattctcgg gctgccagag attgcggtca cagacggagc ccggctccgc
1251 aaggttagta gcaatattag ataccttagc caaacccatc taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa cgcgcttgtg gcagtggaga
1351 gaagagtttt tacagtagga aagggggaca aggcaatcta ccccccccgc
1401 cctgagcatg acattttcac tgatacgatg gattactttc aaaaatccat
1451 tatagaagag gtgggatact gtaaaacata tccagcgcaa ctcctggcta
1501 atagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatcc
1551 ttgaaaactg tcccatatca tcagaaggat gccaatgtgc aagctttcct
1601 gaagaaggaa aaacattgga tgaccaagga catcgccccc cgattgattt
1651 gcccccgcag caagcggtat aatatcatcc taggaactcg tttgaaattc
1701 aacgagaaga agatcatgca cgccatcgat agtgtgtttg gatcccccac
1751 tgtgctttct ggttatgaca acttcaaaca aggaagaatc atagccaaaa
1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc
1851 tttgaccaac atgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatggaatc ttcggagaca gcgaaatggc tcttgcactt gaacaccaaa
1951 tcaccaacaa catcaagatg tttgttgaag acaaaatgct taggttcaag
2001 gtaagaggcc acagaatgtc cggtgacatt aataccagca tgggaaataa
2051 gctcataatg tgcggcatga tgcacgcata tcttaagaag ctgggtgttg
2101 aagctgaact atgtaataac ggagacgact gtgtcatcat cactgataga
2151 gccaatgaga agctctttga tggcatgtac gaccatttcc tccagtatgg
2201 cttcaacatg gtgaccgaaa aaccagttta cgaactggaa caattggagt
2251 tttgccagtc aaaaccggtc tctattaatg gaaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agatagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct acatgtcggc tgtcgctcag tgtggtttgg
2401 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat
2451 aggagctcgg ggtacaaaaa agtgagtgag gaatttatta aaaacgtcat
2501 atcgtatgga acagatgaga gactacaagg tagacgtacc tataatgaaa
2551 cacctatcac aaaccacagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagtg tgaaggtgac gactccacat ctgcaatcaa
2701 tactgctttc cataccggaa aaccactcac aaaacgaata ttaattacca
2751 aatcttagct gggtttggga tagggtttat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gtcgtagagg acctagacgc gcaaatcaaa
2901 atggcacaag aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aattttgtat ttagaccaac aggcgggact gaggtattcg
3051 tattctcagt tgacaacctt aaagccaact cctccggggc aatcaaattc
3101 ggccccagtc tatcgcaatg cccagcgctt tcagacggaa tactcaagtc
3151 ctaccatcgt tacaagatca caagtatccg agttgagttt aagtcacacg
3201 cgtccgccaa tacggcaggc gctatcttta ttgagctcga caccgcgtgc
3251 aagcaatcag ccctgggtag ctacattaat tccttcacca tcagcaagac
3301 cgcctccaag accttccggt cagaggcaat taatgggaag gaattccagg
3351 aatcaacgat agaccaattt tggatgctct acaaggccaa tggaactacc
3401 actgacacgg caggacaatt tatcattacg atgagtgtca gtttgatgac
3451 ggccaaatag gtagactcct caacaccgga accaaaacct gcaccggaac
3501 caacaccaac cccccagcca acgccggctc cacagcccac acctgaacca
3551 actcctgcac ctgtccccaa aagattcttc gagtatatcg gaactcctac
3601 cggtacaatc tcgactagag agaacactga cagtatatct gtcagcaagc
3651 tcggtggaca gtcgatgcag tacattgaga atgagaaatg tgaaacgaaa
3701 gtcatcgatt ccttttggag cactaacaac aacgtttctg cgcaagcagc
3751 tttcgtttat ccagtgccag agggatcata cagcgttaac atttcgtgcg
3801 aaggcttcca gtcagttgac cacatcggtg gcaacgagga cggctattgg
3851 attggtttaa ttgcctactc caattcgtct ggcgataatt ggggagttgg
3901 caattacaaa gggtgcagtt ttaagaattt cttggcaacc aacacttgga
3951 gaccaggcca caaagatctc aagttgactg attgccagtt cacagatgga
4001 caaatagttg aaagggacgc cgtgatgtct ttccacgtag aagcaacagg
4051 caaggatgcc agcttctacc tcatggctcc caaaacaatg aaaactgaca
4101 aatacaacta tgttgtctca tatggagggt acacaaacaa gcgaatggaa
4151 ttcggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg
4201 aataacaagg cacgctgaaa cgcccatacg ttctaaacat attcttgttt
4251 ctgagcggta tgcggaacca ttgcccacca tagtcaacca aggcttgtgt
4301 gatgtgaaaa ctcccgagca agaacaaaca ctggtggatg aagatgacag
4351 acaaactgtt tctactgaat ctgatatagc actcctggag tatgaggctg
4401 caacagctga gattccggat gctgaagagg acgttttgcc ctccaaggaa
4451 cagttgtctt caaaaccaat ggatacgtct ggcaatataa taccaaaacc
4501 caaggaacct gaagtacttg ggacatacca aggacagaac atttatcctg
4551 aagacgtacc tccaatggcg cggcagaaat tgagagaagc cgcgaatgcg
4601 ccttccacgc tactctatga aagaagaacc ccaaagaaga gtggcaactt
4651 tttatccaga cttgtagaag cgaataggtc ccctactact cccactgccc
4701 catccgtgtc aactacttca aacatgacaa gggagcagct ccgggagtac
4751 actaggatta gaaattccag cggaatcaca gcagcaaagg cgtacaaggc
4801 gcaattccag tgaagacaac accactagca caaatcggat cctgggaaac
4851 aggcagaact tcggttcgta agctcgggta ggccgtcaac ctaccgccgt
4901 atcgtattgt gtttggccga tggaggatct tcacgttatc gccgtttgta
4951 ttcttgcttt gactgtgctc tctggggtag gcgctgtttt gagttgctgc
5001 cgttggtgct gcagcaatcc ttttcctccc tccctctctt ctgttcaagc
5051 aaaagactct cgatctgtgc gagagacaat caaaaatatc gagggagctt
5101 cggctcagtg aggggattaa cgacccccag taatggccgg tcctggcgga
5151 cataaataac ccgctatagg acgaagtggt agccaccact gatcaaatgg
5201 caaacatgct tctgtgttgt acactgcccc ggagcctacc gggtcaacaa
5251 ggctatccca ccaacccgat gaaatgaggg tggagtgagc ggagtgggtg
5301 acttcgtgat gtacacccga tcgtcaggat tgaagacgtt aaaactcgac
5351 gacctggtac aagtcgttaa actgactcgg gtggatacac cacacccggc
5401 ccagcatgtt ggcataccca cgatacgaaa cgtgggtctc ttggagccac
5451 tacctgtgat gcaaggtagg gtatgagtct tagcaagctc tgagccagga
5501 gatggacata aaccatagca atccaacgtg taaccgcaat ggggcaaaca
5551 acaggtgaac cgtgtccacg ggcctggtta ccgaaaggaa agccagtatc
5601 caacacagca atgtgttggg ggtcacacct tcggggtact cttaacgctg
5651 acactcgaaa gagcagttcg gcaaccc