Sequence of DPV Turnip yellows virus
Turnip yellows virus (BWYV-FL1) genomic RNA
ACC No: X13063
Dated: 2003-04-24 | Length: 5641 | CRC: -2043166768
!!NA_SEQUENCE 1.0
ID BWYVFL1 standard; RNA; VRL; 5641 BP.
XX
AC X13063;
XX
SV X13063.1
XX
DT 17-NOV-1988 (Rel. 18, Created)
DT 24-APR-2003 (Rel. 75, Last updated, Version 9)
XX
DE Turnip yellows virus (BWYV-FL1) genomic RNA
XX
KW coat protein; genomic RNA; ORF1; ORF2; ORF3; ORF4; ORF5; ORF6;
KW unidentified reading frame ribosomal slippage; viral genome.
XX
OS Turnip yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5641
RA Richards K.;
RT ;
RL Submitted (26-SEP-1988) to the EMBL/GenBank/DDBJ databases.
RL Richards K., Institut de Biologie Moleculaire des Plantes, 12 Rue du
RL General Zimmer, 67000 Strasbourg, FRANCE.
XX
RN [2]
RP 1-5641
RX MEDLINE; 89057523.
RX PUBMED; 3194229.
RA Veidt I., Lot H., Leiser M., Scheidecker D., Guilley H., Richards K.,
RA Jonard G.;
RT "Nucleotide sequence of beet western yellows virus RNA";
RL Nucleic Acids Res. 16:9917-9932(1988).
XX
RN [3]
RP 1545-1628
RX MEDLINE; 93181226.
RX PUBMED; 7680118.
RA Garcia A., Van Duin J., Pleij C.W.A.;
RT "Differential response to frameshift signals in eukaryotic and prokaryotic
RT translational systems";
RL Nucleic Acids Res. 21:401-406(1993).
XX
DR GOA; P09507; P09507.
DR GOA; P09508; P09508.
DR GOA; P09514; P09514.
DR SWISS-PROT; P09504; V29K_BWYVF.
DR SWISS-PROT; P09506; V66K_BWYVF.
DR SWISS-PROT; P09507; RRPO_BWYVF.
DR SWISS-PROT; P09508; COAT_BWYVF.
DR SWISS-PROT; P09511; VPG_BWYVF.
DR SWISS-PROT; P09514; V51K_BWYVF.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5641
FT /db_xref="taxon:131083"
FT /organism="Turnip yellows virus"
FT /isolate="FL1"
FT CDS 32. .781
FT /db_xref="SWISS-PROT:P09504"
FT /note="ORF 1"
FT /product="hypothetical protein"
FT /protein_id="CAA31462.1"
FT /translation="MQFLAHDNFHTLQVKKVRFLHPQQEVFLLAGLLLNIKQFVRAIKE
FT RNNVFKIDVFLRSLLYQLPFHLGSCFHDAPRELIPATEPELCAWFSLQTGYAPASTSGR
FT VNLHVPGTKTSRRRIIQRSFASDFSEKLKRFPECLFVSLELFQRLLSTWTKDVERRIFF
FT SCREIPLGSDTLMELANLGEFLRVMVVGEQFHNSRLLSRLAVHCYKIYGEDGFISFWRI
FT ANLDHFDCFLTPEEILFSSSVYTEMFV"
FT CDS 174. .1997
FT /db_xref="SWISS-PROT:P09506"
FT /note="ORF 2"
FT /product="hypothetical protein"
FT /protein_id="CAA31463.1"
FT /translation="MYSKLMFFFALCSISFLFTSEAASTMLLESSYLPLNQSYAPGFLY
FT KRDMLPPPLQAVLTYTCPEPRPLAEESYNDLLRAISQKSSSDFQNAYSLALSFSSDFYQ
FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTKY
FT MVKTVSFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC
FT VIPITHASGNHAGYASCIKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKT
FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKASIYSFDRDGWVSSYAEIVG
FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSLPGLTSPTYVF
FT ETTAPQGRVFAQEDIAEIEGLYAQVMKRVQQAEDFKPKTGKYWGDMEDDEDIFFESKED
FT LSGNGVRGTVRGTNGEGSSTPKTSNVDGKEMMEKIISSLVGKINLENIERKVIEEISAK
FT AMKTPKSRRRRAPKKQPESSKDTSPRSTTGKYQPPHVRSPASVTAANCPNTTTPSKKKN
FT LAGGRPSSGTIPRWVRKQAASAGPSSAPKQN"
FT CDS join(174. .1556,1556. .3280)
FT /db_xref="GOA:P09507"
FT /db_xref="SWISS-PROT:P09507"
FT /note="ORF 3"
FT /product="hypothetical protein"
FT /protein_id="CAA31464.2"
FT /translation="MYSKLMFFFALCSISFLFTSEAASTMLLESSYLPLNQSYAPGFLY
FT KRDMLPPPLQAVLTYTCPEPRPLAEESYNDLLRAISQKSSSDFQNAYSLALSFSSDFYQ
FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTKY
FT MVKTVSFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC
FT VIPITHASGNHAGYASCIKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKT
FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKASIYSFDRDGWVSSYAEIVG
FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSLPGLTSPTYVF
FT ETTAPQGRVFAQEDIAEIEGLYAQVMKRVQQAEDFKPKTGKYWGDMEDDEDIFFESKED
FT LSGKRSARHRPRNKRRRQLHPKDKQRRWERDDGENNLISSGKDKSREHREESDRGDLRE
FT SDENSEIPPQKSPKETAGEFERYFSSLYNWEVPTSPREVPGFRHCGKLPQYYHPKQKEE
FT SSWGKTLVGNHPALGEKTSGFGWPKFGPEAELKSLRLQASRWLERAQSAEIPSDAERER
FT VIQKTADVYHPCQTNGPAATRGGTLTWNNFMIDFKQAVFSLEFDAGIELPYIAYGKPTH
FT RGWVEDQKLLPILAQLTFFRLQKMLEVNFEDMGPEELVRNGLCDPIRLFVKGEPHKQAK
FT LDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRAIPSKPGFGLSTDEQVLDFVESL
FT ARQVGTTTTEVVANWKNYLTPTDCSGFDWSVADWMLHDDMIVRNRLTIDLNPATERLRS
FT CWLRCISNSVLCLSDGTLLAQIHPGVQKSGSYNTSSSNSRIRVMAAFHTGAIWAMAMGD
FT DALESNPADLAAYKKLGFKVEVSGQLEFCSHIFRAPDLALPVNENKMIYKLIYGYNPGS
FT GNAEVVSNYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKIPGE"
FT CDS 3483. .4091
FT /db_xref="GOA:P09508"
FT /db_xref="SWISS-PROT:P09508"
FT /note="ORF 4"
FT /product="coat protein"
FT /protein_id="CAA31465.1"
FT /translation="MNTVVGRRIINGRRRPRRQTRRAQRPQPVVVVQTSRATQRRPRRR
FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGMLKAYHE
FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGKRAFTASYING
FT TEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQFHNPK"
FT CDS 3514. .4041
FT /db_xref="SWISS-PROT:P09511"
FT /note="ORF 5"
FT /product="hypothetical protein"
FT /protein_id="CAA31466.1"
FT /translation="MEEDDHAGKHDALSALSQWLWSKPLGQHNADLDDDEEVTTGQEEL
FT FLPEEQVRARHLFSQKTISREVPAEQSRSGRVYQTARHSLMECSRPTMSIKSQWSFWSS
FT SPKPLPKIPVPSLTSWTHTVNSTPFPQLSTSSGSQSPGKGRLQRLTSTERNGTTLPRTN
FT SGSSTKAMVLHR"
FT CDS 3483. .5495
FT /db_xref="GOA:P09514"
FT /db_xref="SWISS-PROT:P09514"
FT /note="ORF 6"
FT /note="readthrough protein"
FT /transl_except=(pos:4089. .4091,aa:Tyr)
FT /protein_id="CAA31467.2"
FT /translation="MNTVVGRRIINGRRRPRRQTRRAQRPQPVVVVQTSRATQRRPRRR
FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGMLKAYHE
FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGKRAFTASYING
FT TEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQFHNPKYVDEEPGPSPGPSPSPQPTP
FT QKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPSQRFRYIEDENMNWTNLDSRWYSQNSL
FT KAIPMIIVPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLSEGWNVGIYNN
FT VEITNNKADNTLKYGHPDMELNGCHFNQGQCLERDGDLTCHIKTTGDNASFFVVGPAVQ
FT KQSKYNYAVSYGAWTDRMMEIGMIAIALDEQGSSGSVKTERPKRVGHSMAVSTWETIKL
FT PEKGNSEGYETSQRQDSKTPPTASGGSDTLDVEEGGLPLPVEEEIPDFVGDNPWSDLST
FT KNSQEEEAMSSESGLRPQLKPPGLPKPQPIRTIRNFDPTPDLVEAWRPDVNPGYSKADV
FT AAATIIAGGSIKDGRSMIDKRNKAVLDGRKSWGSSLASSLTGGTLKASAKSEKLAKLTT
FT SERARYERIKRQQGSTRASEFLESLLAGEDPDSRF"
XX
SQ Sequence 5641 BP; 1574 A; 1425 C; 1343 G; 1299 T; 0 other;
X13063 Length: 5641 May 13, 2003 09:00 Type: N Check: 8799 ..
1 acaaaagaaa ccaggaggga atccttagtt gatgcaattt ctcgctcacg
51 ataactttca cactttgcaa gtcaagaaag tccgattcct ccaccctcaa
101 caagaagtgt ttcttttagc aggtttattg ctcaatataa aacaatttgt
151 acgagcaatc aaagagcgca ataatgtatt caaaattgat gtttttcttc
201 gctctttgct ctatcagctt ccttttcacc tcggaagctg cttccacgat
251 gctcctcgag agctcatacc tgccactgaa ccagagttat gcgcctggtt
301 ttctttacaa acgggatatg ctcccgcctc cacttcaggc cgtgttaact
351 tacacgtgcc cggaaccaag acctctcgca gaagaatcat acaacgatct
401 tttgcgagcg atttctcaga aaagctcaag cgatttccag aatgcttatt
451 cgttagcctt gagcttttcc agcgacttct atcaacatgg actaaagacg
501 ttgaaagacg tatctttttt agctgtcgag aaattcctct ggggtctgac
551 acgcttatgg agctcgctaa tcttggcgag tttctccgcg ttatggtggt
601 tggtgagcaa tttcacaact cccgtcttct gtctcgcctt gctgtacact
651 gttacaaaat atatggtgaa gacggtttca tttctttttg gaggattgcc
701 aatctggatc atttcgattg ctttctcact cctgaagaaa tccttttcag
751 ctcttcggtc tacaccgaaa tgtttgtatg aaaaggccat agacggtttc
801 aagagtttca ctatcccgca gagtccccca aaatcttgcg tgattcccat
851 cacccacgca agcggaaacc acgctggcta tgccagttgt atcaagctat
901 ataacggaga aaatgctcta atgacggcaa ctcacgtcct acgtgattgc
951 cccaacgccg tggctgtttc cgccaaagga ctcaaaacgc ggattccact
1001 cgcagaattc aaaacaatcg cgaaatccga caaaggtgat gttaccctcc
1051 ttcgcggccc ccccaattgg gaaggactgt tgggctgtaa agcggccaac
1101 gttataacag ctgctaacct agcgaaatgc aaagcatcca tatactcttt
1151 tgacagagat ggctgggtta gcagttatgc cgagatcgta ggctcagaag
1201 gtacagatgt tatggttctg agccatacgg aaggaggaca ctccggaagc
1251 ccctacttca atggtaaaac catcttgggg gttcattcag gtgccagtgc
1301 tactggaaat tacaatttaa tggcaccaat cccatccctc cccggactta
1351 ctagtccgac ttatgtgttc gaaaccaccg caccacaagg aagagttttc
1401 gcacaagaag atatcgctga aatcgaaggc ctctatgcac aagtaatgaa
1451 aagagttcaa caagcggaag atttcaaacc caaaactgga aagtattggg
1501 gtgatatgga ggatgatgaa gacattttct tcgaaagcaa agaagatctg
1551 tcgggaaacg gagtgcgcgg caccgtccgc ggaacaaacg gagaaggcag
1601 ctccacccca aagacaagca acgtcgatgg gaaagagatg atggagaaaa
1651 taatctcatc tctagtggga aagataaatc tcgagaacat cgagaggaaa
1701 gtgatagagg agatctccgc gaaagcgatg aaaactccga aatcccgccg
1751 cagaagagcc ccaaagaaac agccggagag ttcgaaagat acttctcctc
1801 gctctacaac tgggaagtac caacctcccc acgtgaggtc cccggcttcc
1851 gtcactgcgg caaactgccc caatactacc accccaagca aaaagaagaa
1901 tctagctggg ggaagaccct cgtcgggaac catcccgcgt tgggtgagaa
1951 aacaagcggc ttcggctggc ccaagttcgg ccccgaagca gaactgaaga
2001 gcctgcgact gcaggcttca cggtggctgg aacgcgccca gtccgcagaa
2051 ataccctctg acgctgagag ggagcgtgtg attcaaaaga ccgcagatgt
2101 ttaccatcct tgccaaacaa atgggcctgc ggcaacccga ggaggaacac
2151 taacctggaa caacttcatg attgatttca aacaggcagt gttctcgctg
2201 gagttcgatg ccggaatcga gctcccctat attgcctatg gcaagcccac
2251 acaccgtggg tgggttgaag accagaaact ccttccaatc ctagctcaat
2301 tgaccttctt ccgactacag aagatgttgg aggtcaattt cgaagatatg
2351 ggacctgagg agctggtccg gaacggtttg tgtgatccca tccgattatt
2401 cgtgaagggt gagccgcaca agcaagcgaa gctcgatgaa ggccgctacc
2451 gcctcataat gagcgtttcc ctcgtggatc aactggtagc ccgggttctg
2501 tttcaaaatc agaacaagcg ggaaattgcc ctgtggaggg ccatccccag
2551 caaacccggt tttggcttgt ctacggatga gcaagtgctg gactttgtgg
2601 aaagtctggc ccgtcaagta ggcaccacta cgacagaggt ggttgccaat
2651 tggaagaatt acttgacgcc cacggattgc tccggttttg actggagtgt
2701 tgcggattgg atgcttcacg acgacatgat cgtccgcaac agacttacca
2751 tcgacctcaa ccccgctaca gaaagattaa gatcttgctg gttgaggtgc
2801 atttcaaact cagtattgtg cctgagtgat ggcacccttt tagcccaaat
2851 tcatccgggc gttcagaaga gtgggagcta taatacatca agctccaact
2901 cccggatccg agttatggcc gccttccaca caggtgccat ctgggctatg
2951 gcgatgggtg atgatgccct cgagtccaat cccgctgacc tagcagcgta
3001 caagaaacta ggtttcaagg ttgaggtttc cggacaactg gaattctgct
3051 ctcatatctt tagagcgccg gacctcgccc tccctgtgaa cgaaaataag
3101 atgatctaca aactgatcta tggctataat ccagggagcg gaaacgctga
3151 ggtagtttca aactacttgg ccgcttgttt ctcagttctg aacgagttgc
3201 ggcatgatcc agcgtccgtt gaacttcttt actcgtggtt agtcgatccg
3251 gtgctaccac aaaagatacc aggagagtaa agaagaagaa agtcagctta
3301 cattgaaatt ttaaagaggt ttctgcaaca gtaagagact taagcaaacc
3351 caattaaaga tacaacggat tacaaattcc tagcaggctt cgccgcaggc
3401 ttcgtttcat cgataccaat atccgtgatc agtatctatt tcatctacct
3451 aagaatctcc aaacacgtac gcgaaatcgt taatgaatac ggtcgtgggt
3501 aggagaatta tcaatggaag aagacgacca cgcaggcaaa cacgacgcgc
3551 tcagcgccct cagccagtgg ttgtggtcca aacctctcgg gcaacacaac
3601 gccgacctag acgacgacga agaggtaaca accggacagg aagaactgtt
3651 cctaccagag gagcaggttc gagcgagaca tttgttttct caaaagacaa
3701 tctcgcggga agttccagcg gagcaatcac gttcgggccg agtctatcag
3751 actgcccggc attctctaat ggaatgctca aggcctacca tgagtataaa
3801 atctcaatgg tcattttgga gttcgtctcc gaagcctctt cccaaaattc
3851 cggttccatc gcttacgagc tggacccaca ctgtaaactc aactcccttt
3901 cctcaactat caacaagttc gggatcacaa agcccgggaa aagggcgttt
3951 acagcgtctt acatcaacgg aacggaatgg cacgacgttg ccgaggacca
4001 attcaggatc ctctacaaag gcaatggttc ttcatcgata gctggttctt
4051 tcagaatcac cattaagtgt caattccaca accccaaata ggtagacgag
4101 gaacccggcc ctagcccagg gccttctccc tctccacaac ccacacccca
4151 aaagaaatat cgttttatcg tctatactgg agtccccgtg actcgtataa
4201 tggctcaatc tacggatgat gccatctctt tgtatgatat gccgtcccaa
4251 cggtttcgct acatagagga cgagaacatg aactggacga acctcgattc
4301 tcgatggtat tcccagaatt ctttgaaagc catcccgatg ataatagtgc
4351 cagtccctca aggtgagtgg accgtggaaa tatcgatgga ggggtatcaa
4401 ccaacctcaa gcaccacaga tcctaacaag gacaaacaag atggtctcat
4451 cgcctacaac gatgatctta gtgaaggttg gaacgtgggg atttacaata
4501 atgtggagat aaccaacaac aaggccgata atactttgaa gtatggccac
4551 ccagacatgg aactcaatgg ctgtcatttc aatcaaggac agtgtctgga
4601 aagagatgga gatttgactt gtcatatcaa gacgactggt gacaatgcct
4651 ccttctttgt tgttggaccc gctgtccaga agcaatctaa atataattac
4701 gccgtttcgt acggagcctg gacagatcgg atgatggaga tagggatgat
4751 cgccatagca cttgatgaac aaggctcatc cggttccgta aagacagaaa
4801 gaccaaagag agttgggcac tccatggcag tctcaacctg ggagactata
4851 aaattgccgg agaagggaaa ctccgaggga tacgaaacca gtcaaagaca
4901 agactctaaa actcctccca cagctagtgg gggttctgac acgctggacg
4951 tcgaagaagg aggcttgccc cttcctgttg aagaagagat ccccgatttt
5001 gttggggata acccctggtc tgacttatcg actaagaatt cacaggaaga
5051 agaggctatg tcatcagaga gtggtcttag accccagttg aagcctcctg
5101 gtctgccaaa acctcaaccg atcagaacga ttcgaaactt cgatccaaca
5151 ccggatttgg ttgaagcgtg gcgacccgat gtgaaccccg gatattccaa
5201 agcagatgtg gcagccgcta ctatcatcgc cgggggttcc atcaaagacg
5251 gccgttctat gattgataaa cgaaataaag ctgtgttaga cggtcgcaag
5301 agttggggtt cctccttggc ttcctccctc acgggtggta cgctcaaggc
5351 ctccgccaag tcggagaagc ttgccaaact taccacgagt gaaagggcaa
5401 ggtatgaacg gattaagcgt cagcaaggct ccacaagagc ctcggaattc
5451 ctagaatcac ttctagctgg cgaagacccc gactcaaggt tctgaaggga
5501 tacaacctga cccttcccgg tccagatgaa cccgtccaaa tcatcatcgt
5551 caagccaggg actttaaact ggaacgaatc cgttttacgg ataggcaacg
5601 agtgttttac gctgggagaa atccctacgg cacttcggtg t