Sequence of DPV Cymbidium ringspot virus
Cymbidium ringspot tombusvirus RNA
ACC No: X15511
Dated: 2005-04-18 | Length: 4733 | CRC: 1377304006
!!NA_SEQUENCE 1.0
ID CRTV1 standard; genomic RNA; VRL; 4733 BP.
XX
AC X15511;
XX
SV X15511.1
XX
DT 23-NOV-1989 (Rel. 21, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE Cymbidium ringspot tombusvirus RNA
XX
KW .
XX
OS Cymbidium ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4733
RA Grieco F.;
RT ;
RL Submitted (08-JUN-1989) to the EMBL/GenBank/DDBJ databases.
RL Grieco F., Centro di Studio sui virus e le virosi delle colture ,
RL mediterranee c/o dip. di patol. vegetale - universita, di bari , Via
RL Amendola n 165/A 70126 Bari, Italy.
XX
RN [2]
RP 1-4733
RX MEDLINE; 89366663.
RX PUBMED; 2771646.
RA Grieco F., Burgyan J., Russo M.;
RT "The nucleotide sequence of cymbidium ringspot virus RNA.";
RL Nucleic Acids Res. 17(15):6383-6383(1989).
XX
CC Data kindly reviewed (11-SEP-1989) by Grieco F.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4733
FT /db_xref="taxon:12144"
FT /mol_type="genomic RNA"
FT /organism="Cymbidium ringspot virus"
FT CDS 161. .2617
FT /db_xref="GOA:Q9WJD6"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9WJD6"
FT /note="translated region"
FT /note="readthrough stop-codon"
FT /transl_except=(pos:1049. .1051,aa:OTHER)
FT /protein_id="CAB38439.1"
FT /translation="METIKRLIWPKKEIFVGDFAIGVNRTVPVDVFQLVCRVVLRYMRT
FT GKIECESDSLSKFVVELLKTDCAAKWEWFMKRRQGGDYIVPLSIATIPLMPLLSCTTSV
FT RAVSVGVLGCGFSSNIPIPRLSVPRKGLLLRLAAGLALAPICALAVYATLPREKLSVYK
FT LRTEARTHMEDEKEATDCLVVESARELKGKDGEDLLTGSRMTKVVASTGRRRRTPYAAK
FT VAQVARAKVGYLRNTPENRLIYQRVIIEIMDKDCVRYVDRDVILPMAIGCCFVYQDGVE
FT ESAALWGSQDSLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPIAKDRNIF
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKDGKLTRTPQPTKGSFGRLSPFRKAV
FT CEKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK
FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDDVFGETTCIKGYTADEVGAIFRRK
FT WDRFDKPVAIGLDASRFDQHCSVEALQYEHSFYRALYPGNKLLSKLLEWQLHNKGKGYV
FT PDGTITYKKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLIIER
FT RNLKRVQGTLPGYFLNLGYTMKVESPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK
FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVERFYSRFPLYDMPVKHQRIDTVTN
FT VHKWRGSGGNYHVTPESRASFWAAFGLTGDEQVALEDRLDRWEMDLFGREGVDAHEPSI
FT LDSAVA"
FT CDS 161. .1051
FT /db_xref="GOA:P17459"
FT /db_xref="UniProt/Swiss-Prot:P17459"
FT /note="translated region"
FT /protein_id="CAA33532.1"
FT /translation="METIKRLIWPKKEIFVGDFAIGVNRTVPVDVFQLVCRVVLRYMRT
FT GKIECESDSLSKFVVELLKTDCAAKWEWFMKRRQGGDYIVPLSIATIPLMPLLSCTTSV
FT RAVSVGVLGCGFSSNIPIPRLSVPRKGLLLRLAAGLALAPICALAVYATLPREKLSVYK
FT LRTEARTHMEDEKEATDCLVVESARELKGKDGEDLLTGSRMTKVVASTGRRRRTPYAAK
FT VAQVARAKVGYLRNTPENRLIYQRVIIEIMDKDCVRYVDRDVILPMAIGCCFVYQDGVE
FT ESAALWGSQDSLGVK"
FT CDS 2629. .3771
FT /db_xref="GOA:Q66226"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q66226"
FT /note="translated region"
FT /protein_id="CAA33533.1"
FT /translation="MAMTTTNNNRAMTRAAKQALPALGALATSGMGQQLFMSGVNYAIE
FT KGKQFVPNRRGGKKNRNTDMVAHPGALSGSMAAPVAISRIVRGSKPRFIRSKGSVTITH
FT RELVGQFNSSSALVVNGGITGNLYKINPANAVLFPWLQTLASNFDQYMFNTLRLQYVPM
FT CASTETGRVAIYFDKDSQDLEPVDRIELANMRHLTETAPWCEGSLRVPVDSVKRFMNDN
FT STVDPKLIDLGQVGLATYGGPGTNAVGDLFIHYTVTFYEPQPSSGLTSTLQTGTGSANA
FT GPTLVAVATTATTTTVTFRSPGTYLVSMVQRATTFTGVTPIALTFNSNTNTTAAGTNYS
FT ANYNVTVPVPGAQMRFVGTGFGNYTLQVTRAKITNAATLL"
FT CDS 3813. .4382
FT /db_xref="GOA:Q66227"
FT /db_xref="InterPro:IPR005332"
FT /db_xref="UniProt/TrEMBL:Q66227"
FT /note="translated region"
FT /protein_id="CAA33534.1"
FT /translation="MDTEYQQVNKPWNELYKEVTLGNKLTVNVGMEEEEVLLLPSNFPT
FT KVRVSMSGGYITVRRVRIRIIPLVSRKAGVSGKLYLRDISDTTGQKLHCTELLDLGKEI
FT RLTMPHLDFSVSAKSDVPIAFGFEELVSPFREGRELFSVSLRWQLGLSAQCYSLPPANV
FT KVMYQEDALKALKPSKKKASRTDSSV"
FT CDS 3845. .4363
FT /db_xref="GOA:P17457"
FT /db_xref="HSSP:1R9F"
FT /db_xref="InterPro:IPR004905"
FT /db_xref="UniProt/Swiss-Prot:P17457"
FT /note="translated region"
FT /protein_id="CAA33535.1"
FT /translation="MERAIQGSDVREQADSECWDGGGGGTTSPFKLPDESPSLHEWRLH
FT HSEESENKDNPLGFKESWSFGKVVFKRYLRYDGAETSLHRALGSWERDSVNDAASRFLG
FT LSQIGCTYSIRFRGTRLTLSGGSGTLQRLIEMAIRTKRTMLQPTPSEREGNVSRRRPEG
FT TEAFKEESE"
XX
SQ Sequence 4733 BP; 1236 A; 1045 C; 1319 G; 1132 T; 1 other;
X15511 Length: 4733 May 10, 2005 10:10 Type: N Check: 9939 ..
1 ngaaatcctc caggacacct cgacctaggt tgtgtatccg gtgatttgcg
51 tactgttgct ttgcgtagag gatttctctc ctgttcacta catatcaggg
101 gtttgaaggc agggtctacc tttcgggggg ataaattgta acttcctgca
151 aataagcaaa atggagacca tcaagagatt aatctggcct aagaaagaaa
201 tttttgtagg cgatttcgcg atcggtgtta ataggacggt accggtggat
251 gtcttccaat tggtgtgccg tgttgtgctg agatatatga ggacagggaa
301 aatagagtgt gagtcagaca gtctgtctaa gttcgttgtg gagttattaa
351 agacagattg tgctgctaag tgggaatggt ttatgaagag acggcagggg
401 ggtgattaca tcgtccctct atctatagcc accatccctc tcatgccgct
451 gttgagttgt accacctcgg tacgcgcagt ctcagtcggg gttttgggtt
501 gtgggtttag ctccaatatc ccaatacctc gtctatctgt gccaaggaaa
551 gggttgctcc tcagactggc ggccggccta gcgttagctc ctatatgcgc
601 gctggccgtg tacgctaccc tgcccaggga aaaactgtcc gtgtataagc
651 taaggacgga ggcacgcaca cacatggagg acgagaagga agcgacggat
701 tgtttagtgg tggagtcggc tcgtgagctc aagggtaagg atggtgagga
751 tctgctcact ggtagtagaa tgaccaaggt tgtggcttcg acaggacgtc
801 gtcgcaggac accatatgca gcgaaagttg cacaggtggc acgtgccaag
851 gttgggtacc tcaggaacac tcctgagaat aggctgatct accagagggt
901 aatcattgaa atcatggaca aagattgcgt caggtatgtt gacagggatg
951 tcatattgcc aatggctatt ggatgctgct ttgtgtacca ggatggagtg
1001 gaggagtcgg cggcactttg ggggtcacag gactccctgg gtgtgaaata
1051 gggaggccta gtgcgtctac ctggggttgt gacacagatc aatcgagata
1101 tcccatctga tgtgttactt cctcaggagg tgctagaggt tcgcacagga
1151 cctcccatag ctaaggaccg taatatattt atggttgcag gttgcccatc
1201 acaggcacgg ttcttagttc ataatcactg cctgaaaaac cttaaaaggg
1251 gtcttgtgga gagggttttc tgcgtcgaga aggacggtaa actcactcgc
1301 actccacaac ctaccaaagg atcctttgga cgtctttccc cgttcaggaa
1351 agcagtttgt gagaaggttg gggtggccca tcgcttaggg tatgacgggt
1401 tcctgtcata ctacagtggt gcgaaactcc gtacttacac gcgagctgtg
1451 gagagtctgc atatcactcc tgtttcagag agggatagtc atctgactac
1501 cttcgtgaaa gcagagaaga tatcgacgtc taagggtgac ccagcaccta
1551 gggtgataca gcctcgaaac cctaggtaca atgtggaact tggaagatat
1601 ctacggcata tggaatccaa actaatgaaa gctgttgatg acgttttcgg
1651 cgaaacgacg tgcatcaaag gttatacagc tgatgaggta ggcgcaatct
1701 tcaggaggaa gtgggatagg ttcgataaac ctgttgccat tggtctcgac
1751 gcgtctagat ttgatcaaca ctgttccgtt gaagcgttgc aatatgagca
1801 tagcttctac agggccttgt accctggcaa caaactcttg agtaagttgt
1851 tggaatggca gctccataac aaaggtaaag gttatgtccc tgatggaacc
1901 ataacttaca agaaggaggg ctgtcgtatg agtggggata taaatacctc
1951 gttgggcaat tacctgctga tgtgcgcgat ggtacatggg tacatgcgtc
2001 acttggggat aaatgagttt agtctggcaa actgcgggga tgactgcgtt
2051 ttgattatcg agcgcaggaa tcttaagcgg gtacagggaa cacttcctgg
2101 ttatttccta aatctaggtt atacaatgaa ggtggaatcc cctgtatttc
2151 aattggaaga ggttgaattc tgccaggcac accccgtaca gtttcagggc
2201 ggttggaaga tggtcagaaa tgtccgcaca gccatgagca aagatgtcca
2251 ctgcgttaac aatatacgcg atctggcaac aaggagggct tggagtaatg
2301 cccaacacca tggtgggttg gcgcttagcg ctggtatacc tgtggttgaa
2351 aggttttact ctaggtttcc tctgtatgac atgcccgtca aacatcagcg
2401 tattgacaca gtgacaaacg tacataaatg gcgcggatca ggtgggaact
2451 accatgtgac cccggagtct agagctagct tttgggcggc atttggactc
2501 acgggggatg aacaggtggc ccttgaggat cgtctggata gatgggagat
2551 ggatctattt ggaagagagg gtgttgacgc tcatgagccc agcatccttg
2601 attccgccgt agcttgacca aatacacaat ggcaatgaca actaccaaca
2651 acaatcgggc gatgacccga gcagcaaaac aagcgttacc ggcattgggt
2701 gctctagcca cctccggtat gggacagcaa ttatttatga gcggggtgaa
2751 ctacgctata gagaaaggga aacaattcgt acccaacagg cgtggaggga
2801 agaagaatag gaatacagac atggttgcgc atccgggcgc cctttcaggg
2851 agcatggccg caccggtggc aatctctagg attgtcaggg gatcaaaacc
2901 ccggtttatc aggagtaaag gttctgtcac catcacacac cgagaattgg
2951 tgggtcagtt caatagctcc tcggctttgg tggttaatgg gggaatcacg
3001 gggaacctgt acaagattaa tccggctaat gccgtcttgt tcccctggtt
3051 gcaaacattg gcgtctaatt tcgaccagta catgttcaac acactccgtc
3101 tccagtacgt gccaatgtgt gcaagcaccg agactgggag ggtggctatc
3151 tactttgaca aagattctca ggatctagaa ccagtagatc gcatcgaact
3201 agcaaacatg cgacacctta cagagaccgc cccttggtgc gagggctctc
3251 tgcgggtgcc agtggacagc gtcaagagat ttatgaatga caattccacc
3301 gtcgatccaa agctgataga cttgggccag gttgggctgg cgacgtatgg
3351 agggcccggg acaaacgcag tgggtgactt attcatccac tacacagtaa
3401 ccttctacga accgcaaccg tcctcaggtt tgacgtctac gctacaaaca
3451 gggactggtt cagctaacgc tgggcctacc ctggttgctg tggctaccac
3501 agccacgacg actaccgtga cgttcagatc tccaggtaca tacctagtct
3551 caatggtgca aagggctaca accttcacgg gagtaacgcc cattgccctt
3601 actttcaact ccaatacgaa caccaccgcg gctggtacca attactcagc
3651 caattacaat gtgactgtac ccgtgcctgg tgcacagatg cggtttgtag
3701 ggaccggctt cggtaactac accttgcagg taacacgcgc caaaatcaca
3751 aatgctgcaa cacttctgta gttgcattgc acaggaaggg gcttcttgaa
3801 cctaaccatt tcatggacac tgaataccaa caagttaata aaccatggaa
3851 cgagctatac aaggaagtga cgttagggaa caagctgaca gtgaatgttg
3901 ggatggagga ggaggaggta ctacttctcc cttcaaactt cccgacgaaa
3951 gtccgagtct ccatgagtgg aggctacatc acagtgagga gagtgagaat
4001 aaggataatc cccttggttt caaggaaagc tggagtttcg ggaaagttgt
4051 atttaagaga tatctcagat acgacggggc agaaacttca ttgcacagag
4101 ctcttggatc ttgggaaaga gattcggtta acgatgccgc atctagattt
4151 ctcggtctca gccaaatcgg atgtacctat agcattcggt ttcgaggaac
4201 tcgtctcacc ctttcgggag ggtcgggaac tcttcagcgt ctcattgaga
4251 tggcaattag gactaagcgc acaatgttac agcctacccc cagcgaacgt
4301 gaaggtaatg tatcaagaag acgccctgaa ggcactgaag ccttcaaaga
4351 agaaagcgag taggacagac tcttcagtct aggttggagg aagcaggaga
4401 acactgcttg agggtacagg ttactcttag tgagactagg ttcgtgtgat
4451 gacgagtcag gtcgggctcc gcgctgggtt tggtcaccca ggggatggag
4501 atatggaaag gatctcgtgc gctataagtc taacgaaagt tgagcttgca
4551 acatgggtct atgcctgaat aagtcacgtg agttgccacc actatgaata
4601 ggatttttgt tcacgactag cggagaacat ttgtggaaac caaccaagac
4651 acggttgatc tcacccttcg ggggggctat agagatcgct ggaagcacta
4701 ccggacaacc ggaacattgc agcaatgcag ggg