Sequence of DPV White clover mosaic virus
White clover mosaic virus total genomic mRNA
ACC No: X16636
Dated: 1993-09-12 | Length: 5846 | CRC: 320925412
!!NA_SEQUENCE 1.0
ID POWCLMV4 standard; RNA; VRL; 5846 BP.
XX
AC X16636;
XX
SV X16636.1
XX
DT 10-FEB-1990 (Rel. 22, Created)
DT 12-SEP-1993 (Rel. 36, Last updated, Version 6)
XX
DE White clover mosaic virus total genomic mRNA
XX
KW coat protein; complete genome.
XX
OS White clover mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potexvirus.
XX
RN [1]
RC revised by [3]
RP 1-5846
RA Beck D.L.;
RT ;
RL Submitted (28-SEP-1989) to the EMBL/GenBank/DDBJ databases.
RL Beck D. L., DSIR Plant Protection, Private Bag, Auckland, New Zealand.
XX
RN [2]
RC revised by [3]
RP 1-5846
RX MEDLINE; 90281578.
RA Beck D.L., Forster R.L.S., Bevan M.W., Boxen K.A., Lowe S.C.;
RT "Infectious transcripts and nucleotide sequence of cloned cDNA of the
RT potexvirus White clover mosaic virus";
RL Virology 177:152-158(1990).
XX
RN [3]
RP 1-5846
RA Beck D.;
RT ;
RL Submitted (20-MAR-1990) to the EMBL/GenBank/DDBJ databases.
RL Beck D. L., DSIR Plant Protection, Private Bag, Auckland, New Zealand.
XX
DR SWISS-PROT; P15402; RRPO_WCMVO.
DR SWISS-PROT; P15403; VHEL_WCMVO.
DR SWISS-PROT; P15404; VMEM_WCMVO.
DR SWISS-PROT; P15405; V07K_WCMVO.
DR SWISS-PROT; P15406; COAT_WCMVO.
XX
CC Data kindly reviewed (20-MAR-1990) by Beck D.
CC See for White clover mosaic virus complete RNA genome.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5846
FT /db_xref="taxon:12188"
FT /organism="White clover mosaic virus"
FT /strain="O"
FT /clone="pWC1MV-4"
FT CDS 108. .3992
FT /db_xref="SWISS-PROT:P15402"
FT /note="ORF 1 (AA 1-1294)"
FT /protein_id="CAA34628.1"
FT /translation="MAKVRAALDRITDPSVKAVLNEEAYSHIRPVLRESLTNNPYAIAP
FT DAADTLEKYGIATNPFAVKVHSHGAVKSIENTLLERVGFNLPKEPCTFLFLKRSKLRYL
FT RRGPSNNDIFINLAIEPRDLQRYEEDTLVESWTRITTRYAYISDTFHFFTRKMLADLFF
FT HNPALDVLYATLVLPPEALHKHPSIEPDLYTINYNFNGFQYIPGNHGGGSYSHEFKQLE
FT WLKVGHLKSPELCLTFQMIESIGANHLFMITRGIKITPRVRTFTKDSYVLFPQIFHPRN
FT LNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQLIKTSELSDYHPDEIVHIVNYFV
FT FISKLDSINSYSDILSLPIWSKALLPIKTKITQLWEKLTGARAFNQLLDALQWKTFTYP
FT LEVVDSPQPLQTRDCFIEDERLEIDTLEDEIPPNPNDNTSMSPQSIEEAVKNNPDLPWA
FT PWLLILQAHNADCTEKQYDPENNLILPIQEINTLPKHQHPDIPTDLLTLLTKLHREPTT
FT VSLDNHRARAYGSDVKNLRIGALLKKQSKDWLASFALKTENIEREVLMSVIHGAGGSGK
FT SHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTNKVPNLEQANFKTFEKALCQPCGKIIV
FT FDDYSKLPQGYIEAFLAINQNVILAILTGDSKQSFHHESNEDAYTATLEPSIITYQPFC
FT RYYLNITHRNKPDLANKLGVYSCSSGTTSFTMSSQALKGMPILSPSIMKKTALGEMGQK
FT SMTYAGCQGLTTKAVQILLDTNTPLCSSNVIYTALSRAVDHIHFINTGPNSTDFWEKLD
FT STPYLKTFLDCVREEKMNEIIAAEEPPTPVQAPTTHFPKVNPTTVIESYVHDLPEKHDR
FT EIFSETHGHSNAIQTDNPVVQLFPHQQAKDETLYWATIEARLQCTSSEENLKEFHLKHD
FT IGDILFLNYKQAMNLPQDPIPFNPDLWTLCRQEIENTYLKKSAAALVNAATRQSPDFDS
FT HAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKI
FT FVNCETTPADFNSFILDEWNFNRTCFSNDFTAFDQSQDGSILQFEVIKAKFHNIPEDVI
FT EGYIQIKTHAKIFLGTLSIMRLSGEGPTFDANTEANIAYTHTKFNIPCDAAQVYAGDDM
FT SIDYVASVKPSFNMIEHLMKLKGKPVFNTQTQGDFAEFCGWTISPKGIIKKPEKMNMSI
FT ELQKNINKFHEVKRSYALDHAFAYQLGDELHELYNENEAEHHQLATRSLILAGQATALD
FT ILDYGLRDLK"
FT CDS 3995. .4705
FT /db_xref="SWISS-PROT:P15403"
FT /note="ORF 2 (AA 1-236)"
FT /protein_id="CAA34629.1"
FT /translation="MDHIHHLLSSHGFTRTRLAKSKPIVVHAIAGSGKSTVIRKILSDL
FT PNARAYTLGKPDPYSLSNPTIKAFAQFKRGTLDILDEYGQLPFADLDSSFEFIFTDPYQ
FT APTDNLFEPHYTLEITYRFGPNTCNLLNQAFQSNITSLVTQDNISFGSPYLVDPVGTIL
FT AFQPDTYLILCLHQAPFFKVSEVIGYQWPTVTLYLACKISEIPEEERHLLFIGLTRHTE
FT SLLILGPDAFDSSP"
FT CDS 4683. .5036
FT /db_xref="SWISS-PROT:P15404"
FT /note="ORF 3 (AA 1-117)"
FT /protein_id="CAA34630.1"
FT /translation="MPLIPPPNPQKTYQIAVLALGLVLLLAFVLISDHSPKVGDHLHNL
FT PFGGEYKDGTKTIKYFQRPNQHSLSKTLAKSHNTTIFLIILGLIGTLHGLHYFSNNRRI
FT SSSLHCVLCQNKH"
FT CDS 4960. .5160
FT /db_xref="SWISS-PROT:P15405"
FT /note="ORF 4 (AA 1-66)"
FT /protein_id="CAA34631.1"
FT /translation="MDFTTLVIIGVYLLVFIVYFAKINTSMCTISISGASVEISGCDNP
FT ALFEILPNLKPFDHGLSVPSI"
FT CDS 5167. .5793
FT /db_xref="SWISS-PROT:P15406"
FT /note="coat protein (AA 1-208)"
FT /protein_id="CAA34632.1"
FT /translation="MATTTATTPPSLTDIRALKYTSSTVSVASPAEIEAITKTWAETFK
FT IPNDVLPLACWDLARAFADVGASSKSELTGDSAALAGVSRKQLAQAIKIHCTIRQFCMY
FT FANVVWNIMLDTKTPPASWSKLGYKEESKFAGFDFFDGVNHPAALMPADGLIRGPSEAE
FT LLAHQTAKQVALHRDAKRRGTNVVNSVEITNGRSDPIGPLITYPQ"
FT old_sequence 5820. .5821
FT /note="gtt was gt in [1]"
FT /citation=[1]
XX
SQ Sequence 5846 BP; 1754 A; 1589 C; 971 G; 1532 T; 0 other;
X16636 Length: 5846 December 21, 2001 16:01 Type: N Check: 1529 ..
1 gaaaacaaga cgagacgaac ccaaacagaa cgagccatcc gcagaaaaac
51 taaaccatcc caggttttct ttgaacataa ccaatccgta gtttgacaaa
101 ggctgccatg gctaaagttc gtgccgctct tgacagaatc actgatccat
151 cggttaaagc tgtactcaat gaagaggcat acagccacat ccgaccggtt
201 cttcgtgaat ccctaaccaa caacccctac gccatcgcac ccgatgctgc
251 tgatacgcta gaaaagtatg gaattgctac taatccattc gcagtgaaag
301 tacattccca tggagcagtt aaaagtattg aaaacaccct acttgagaga
351 gttgggttta acttgccgaa agagccatgt accttcctct tcctcaaaag
401 aagtaagctg cgttacctca gacgtggacc tagcaacaat gacatcttta
451 tcaatctagc gatcgaaccc cgcgacctcc aaagatacga ggaagacact
501 cttgttgaga gttggacacg tatcaccact aggtatgcat atattagtga
551 cactttccac ttcttcacta ggaagatgtt ggctgacctt ttctttcata
601 atccggcctt agatgtatta tatgccactt tagtacttcc acccgaagcc
651 ctccacaaac atcctagcat agaacctgac ttatacacta ttaactataa
701 ctttaatggt ttccaataca tcccaggcaa tcatggtggt ggttcctact
751 cccatgaatt caaacaactg gagtggctca aagttggaca tctcaaatct
801 ccagaactat gcctcacttt ccagatgatc gaatccattg gtgccaacca
851 ccttttcatg attacccgcg gtattaaaat aacccctagg gtcaggactt
901 tcaccaaaga ctcttacgtg ctctttcccc aaatcttcca ccctcgaaac
951 ctcaatccct caaaaccatt cccgaaagtc aaagcaatgc aactattcac
1001 ttatgtgaag tctgtcaaga atccaactga acgagacatc tatgccaaaa
1051 ttcgacagct aatcaagact tctgagctat ctgattatca tccagatgaa
1101 attgtgcaca ttgtaaatta ctttgtgttc atctccaagt tagatagcat
1151 caactcttat tctgacatac tctcgctacc catctggtct aaagcattgc
1201 tacccatcaa aaccaaaatt acacaacttt gggaaaagct caccggcgca
1251 agagccttca atcaactctt agatgcactc caatggaaaa cattcactta
1301 tcctttagag gtagttgatt ctccacagcc ccttcagacc cgagattgct
1351 tcattgaaga cgagagatta gagattgaca cacttgagga tgaaatccca
1401 ccaaatccga acgacaacac ttcaatgagt ccacagagca ttgaggaggc
1451 tgttaaaaac aaccctgatt taccctgggc accatggtta ctcatcttgc
1501 aggctcataa tgctgactgc actgaaaagc agtatgaccc tgagaataac
1551 ctcattcttc ctatacaaga gatcaacacc ctccccaagc accaacaccc
1601 tgacatccca actgaccttc taacactcct aaccaaatta cacagagagc
1651 caactacagt ctcacttgac aaccatcgag ctcgtgccta tggttctgac
1701 gttaagaatc tgcgaatagg cgctctactc aaaaaacaaa gcaaagattg
1751 gttagctagt ttcgctctca aaacggaaaa tattgaacgt gaagttttga
1801 tgtctgtcat ccatggtgcc ggcggctctg ggaaatcaca tgccattcaa
1851 acttggatgc gctccctgaa ccgaagagac cgtcatgtca caatcatttt
1901 accaacgaca gacttgcgga atgactggac caacaaagtg cccaatctgg
1951 agcaagcaaa tttcaaaact tttgagaaag ctctttgtca accttgtggt
2001 aaaattatcg tatttgatga ctactccaag cttcctcaag gctacatcga
2051 agcattcctt gctatcaacc aaaatgtcat tttagccatt cttaccggag
2101 attctaagca gagctttcat catgaatcca atgaggatgc ctacactgcc
2151 accctagaac ccagcattat cacataccaa cccttctgcc gctactacct
2201 aaacataacc catagaaaca aaccagacct agctaacaaa ctgggtgttt
2251 actcctgttc tagtggcacc acctccttca caatgtcatc ccaagctctc
2301 aagggtatgc caattctctc ccccagtata atgaagaaaa ctgctcttgg
2351 agaaatgggc caaaaaagca tgacatacgc tggctgccaa ggtctcacaa
2401 ctaaagctgt ccaaattctc ttggatacca ataccccttt gtgcagttcc
2451 aacgtcatat acactgctct cagccgtgct gttgaccaca tacattttat
2501 taacactgga cccaactcaa cagacttctg ggagaaactt gattccacac
2551 cctacctcaa aactttcttg gactgtgttc gagaagaaaa aatgaatgag
2601 atcatcgctg ctgaagaacc acctactcct gtgcaggctc ctaccaccca
2651 cttcccaaaa gtgaacccca ccacagtgat tgaatcatat gtccacgatc
2701 ttcccgaaaa acatgatcgt gaaatctttt cagagactca tggtcactca
2751 aatgcaattc aaactgacaa tcctgtggtt caactctttc cccaccaaca
2801 agccaaagat gaaactcttt attgggctac catcgaagct agactacaat
2851 gcacttcatc tgaagaaaac cttaaagaat ttcatctcaa acatgatatt
2901 ggtgacattc tcttccttaa ttacaaacaa gccatgaacc ttcctcaaga
2951 ccccatacca tttaacccag acctatggac cctttgcaga caggaaattg
3001 agaacacata cctcaagaaa agtgctgctg cccttgttaa tgctgccacc
3051 cgccaatcac ctgattttga ctcacatgcg atagcactct ttctcaaatc
3101 acaatgggtc aagaaaactg aaaaaattgg ttgccttaaa atcaaagctg
3151 gccaaactat tgctgccttc atgcaacaaa ctgtcatgat ttatggcaca
3201 atggctcgat acatgagaaa atttagaaac caatattgcc ccaggaaaat
3251 ctttgtgaac tgtgaaacca caccagccga cttcaactct ttcatcctcg
3301 acgagtggaa ttttaataga acttgctttt caaatgactt cactgcattt
3351 gatcaaagtc aagatggctc catcctccaa ttcgaagtca ttaaagcaaa
3401 gtttcacaac atacccgagg atgttattga aggctatatc caaatcaaaa
3451 cacatgccaa gatcttcctg ggcaccctta gtatcatgag actctctggt
3501 gaaggtccca cttttgatgc taacactgaa gcaaacattg cttatacaca
3551 caccaagttt aacataccct gcgatgctgc acaggtgtac gctggtgatg
3601 atatgtccat tgactacgtg gcttcagtca agcccagttt caacatgatt
3651 gaacatctga tgaaactcaa aggtaaacca gtttttaaca cacaaactca
3701 gggagacttc gctgaatttt gcgggtggac aatctcacca aaaggcatta
3751 tcaagaaacc agaaaaaatg aacatgagca ttgaactcca aaagaacatc
3801 aacaagtttc atgaagtcaa aagaagttat gctctagacc atgccttcgc
3851 ataccaactt ggtgatgaat tacatgagct atacaatgag aatgaagcag
3901 aacaccacca acttgctaca aggtcactca ttctcgctgg tcaagccacc
3951 gccctagaca tacttgatta cgggttaaga gacctaaagt agcgatggat
4001 cacattcacc acctcctcag ctcccacggt tttacccgca ccagactcgc
4051 caaatccaaa cctatcgttg tccatgctat tgcaggctcc ggtaaatcta
4101 ctgtgatcag gaaaattctc tcagacctac ccaacgctag agcctacaca
4151 ttaggtaaac cagaccccta ttctctctcc aaccccacaa ttaaagcttt
4201 cgcccaattc aaaagaggta cactcgacat tttggatgag tacggccaac
4251 tcccgttcgc cgacttagat tcatctttcg agtttatctt cactgaccct
4301 taccaagcac caactgacaa tctctttgaa cctcactaca cactagaaat
4351 cacctacaga tttggcccta acacttgtaa ccttctcaat caagcattcc
4401 aatctaacat cacaagcctt gtcacccagg acaacatttc atttggttca
4451 ccctacttag ttgacccagt aggtaccatc ctcgcgtttc aacctgacac
4501 ctaccttatc ctttgcttac atcaagcccc tttcttcaaa gtttcagaag
4551 tgattggtta tcagtggcct actgtaacgt tgtacctagc ctgcaaaatt
4601 tctgagattc ctgaagaaga acgtcacctc ctcttcattg gcctgactag
4651 acacacagaa tccctcctta ttttaggtcc tgatgccttt gattcctccc
4701 cctaatcccc agaaaactta ccaaattgcc gtacttgctt taggattagt
4751 gctacttctt gcctttgttc taatttctga tcactctccc aaagtaggtg
4801 atcatctgca caatcttcct tttggaggtg aatacaaaga cggtactaaa
4851 actatcaagt atttccaaag acccaaccaa cattcccttt ccaaaactct
4901 tgccaaatct cacaacacca ccattttcct gatcatctta ggtttaattg
4951 gtaccttgca tggacttcac tactttagta ataataggcg tatatcttct
5001 agtcttcatt gtgtactttg ccaaaataaa cactagcatg tgtactatta
5051 gtatatcagg agcttctgtt gaaatctcag gttgcgacaa cccggctctc
5101 ttcgaaatcc tcccaaatct caaacccttt gaccacgggt taagtgtgcc
5151 atctatttga aatccaatgg caaccaccac agcaaccact cctccatcct
5201 tgacagacat ccgagcccta aaatacactt cctccaccgt ctcagtcgcc
5251 tcacctgctg aaattgaagc tatcactaaa acctgggcag aaacattcaa
5301 aattccaaat gacgtcttgc ctctcgcttg ttgggatctg gctcgtgctt
5351 tcgctgatgt tggcgcttct tctaagtctg aacttactgg tgactctgct
5401 gctcttgcgg gtgtttcacg gaaacaactg gctcaagcta tcaaaatcca
5451 ttgcaccatt cgccagttct gcatgtactt cgccaatgtt gtgtggaaca
5501 tcatgttaga taccaaaaca ccgccagcat cctggtctaa actcggctat
5551 aaagaagaga gcaaattcgc tggctttgac ttctttgatg gtgtcaatca
5601 tcctgctgca ctcatgcctg cagacggcct catccgtggt ccttccgaag
5651 ctgaactctt agcccatcaa accgcaaaac aagtagccct ccatcgcgac
5701 gcaaaacgcc gtggcaccaa cgttgtcaac tctgttgaaa tcactaacgg
5751 tcgctccgac cctattggtc cccttattac ctatccccag taattgcctt
5801 atcacttcac ttaatatgtg tggctttctg tttaataaaa tttcag