Sequence of DPV Lassa virus
Nigeria Lassa virus S (small) RNA for glycoprotein precursor (GPC) and nucleocapsid protein
ACC No: X52400
Dated: 1999-02-10 | Length: 3417 | CRC: -1143295472
!!NA_SEQUENCE 1.0
ID ARLVGPCN standard; RNA; VRL; 3417 BP.
XX
AC X52400; M36544;
XX
SV X52400.1
XX
DT 18-JUN-1990 (Rel. 24, Created)
DT 10-FEB-1999 (Rel. 58, Last updated, Version 11)
XX
DE Nigeria Lassa virus S (small) RNA for glycoprotein precursor (GPC) and
DE nucleocapsid protein
XX
KW envelope protein; glycoprotein; N protein; nucleocapsid protein.
XX
OS Lassa virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC 1-LCMV-LASV complex.
XX
RN [1]
RP 1-3417
RA Clegg J.C.S.;
RT ;
RL Submitted (02-APR-1990) to the EMBL/GenBank/DDBJ databases.
RL Clegg J.C.S., PHLS Centre for Applied Microbiology and Research, Porton
RL Down, Salisbury SP4 OJG, UK.
XX
RN [2]
RP 1-3417
RA Clegg J.C.S., Wilson S.M., Oram J.D.;
RT ;
RL Virus Res. 18:151-164(1990).
XX
DR SWISS-PROT; P04935; NCAP_LASSG.
DR SWISS-PROT; P17332; VGLY_LASSG.
XX
CC See also for overlapping sequence.
XX
CC Data kindly reviewed (02-JUL-1990) by Clegg J.S.S.
XX
CC Entry M36544 was deleted, because it was a duplication of x52400.
CC M36544 is now a secondary accession number of x52400.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3417
FT /db_xref="taxon:11620"
FT /organism="Lassa virus"
FT /strain="GA391"
FT CDS 71. .1543
FT /db_xref="SWISS-PROT:P17332"
FT /note="glycoprotein precursor (AA 1-490)"
FT /protein_id="CAA36645.1"
FT /translation="MGQIVTFFQEVPHVIEEVMNIVLIALSILAILKGLYNVATCGLIG
FT LVTFLLLSGRSCSLIYKGTYELQTLELNMETLNMTMPLSCTKNNSHHYIRVGNETGLEL
FT TLTNTSILNHKFCNLSDAHKRNLYDHSLMSIISTFHLSIPNFNQYEAMSCDFNGGKITV
FT QYNLSHSFAVDAAGHCGTLANGVLQTFMRMAWGGSYIALDSGRGNWDCIMTSYQYLIIQ
FT NTTWDDHCQFSRPSPIGYLGLLSQRTRDIYISRRLLGTFTWTLSDSEGNETPGGYCLTR
FT WMLIEAELKCFGNTAVAKCNEKHDEEFCDMLRLFDFNKQAIRRLKTEAQMSIQLINKAV
FT NALINDQLIMKNHLRDIMGIPYCNYSRYWYLNHTSTGKTSLPRCWLISNGSYLNETKFS
FT DDIEQQADNMITEMLQKEYIDRQGKTPLGLVDLFVFSTSFYLISIFLHLVKIPTHRHIV
FT GKPCPKPHRLNHMGICSCGLYKQPGVPVRWKR"
FT CDS complement(1603. .3315)
FT /db_xref="SWISS-PROT:P04935"
FT /note="nucleocapsid protein (AA 1-570)"
FT /protein_id="CAA36646.1"
FT /translation="MSASKEVRSFLWTQSLRRELSGYCSNIKLQVVKDAQALLHGLDFS
FT EVSNVQRLMRKQKRDDGDLKRLRDLNQAVNNLVELKSTQQKSVLRVGTLSSDDLLILAA
FT DLEKLKSKVTRTERPLSSGVYMGNLSSQQLDQRRALLNMIGMTGVSGGGKGASDGIVRV
FT WDVKNAELLNNQFGTMPSLTLACLTKQGQVDLNDAVQALTDLGLIYTAKYPNSSDLDRL
FT SQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGACMLDGGNMLETIKVSPQTMDGILKS
FT ILKVKKSLGMFVSDTPGERNPYENILYKICLSGDGWPYIASRTSIVGRAWENTVVDLEQ
FT DNKPQKIGNGGSNKSLQSAGFAAGLTYSQLMTLKDFKCFNLIPNAKTWMDIEGRPEDPV
FT EIALYQPSSGCYVHFFREPTDLKQFKQDAKYSHGIDVTDLFAAQPGLTSAVIEALPRNM
FT VITCQGSEDIRKLLESQGRRDIKLIDITLSKADSRKFENAVWDQFKDLCHMHTGVVVEK
FT KKRGGKEEITPHCALMDCIMFDAAVSGGLDAKVLRVVLPRDMVFRTSTPKVVL"
FT misc_feature 1555. .1596
FT /note="intergenic hairpin region"
XX
SQ Sequence 3417 BP; 946 A; 799 C; 707 G; 965 T; 0 other;
X52400 Length: 3417 September 30, 2002 12:40 Type: N Check: 402 ..
1 gcaccgggga tcctaggcat ttaggattgc gcattttaaa acctcctttt
51 tggaaagtgt cgcaatcagg atgggacaga ttgtgacatt cttccaagaa
101 gttcctcatg ttattgagga agtgatgaat attgtcctta ttgcactatc
151 catcctagca attctgaagg gactatacaa tgttgccacg tgtggcttga
201 tagggcttgt cacattcctt ctactttcag gaaggtcatg ctcactgatc
251 tacaaaggga cttacgagct gcaaaccctt gagttgaata tggagactct
301 taatatgacc atgccgctat cctgcacaaa gaacaacagt catcattata
351 taagggtggg gaatgagaca ggacttgagc tcaccttgac caacaccagc
401 attcttaatc acaaattctg taacctctct gatgcccaca aaaggaatct
451 ttatgatcac agcctcatga gtatcatctc tacctttcat ctgtccattc
501 ccaacttcaa tcaatatgag gcaatgagct gcgatttcaa tggggggaaa
551 atcactgtgc aatacaacct gagtcatagc ttcgcagtgg atgcagcagg
601 tcactgcggc acacttgcaa atggtgtctt acaaacattt atgagaatgg
651 cttggggagg gagttatatt gctcttgatt ctggacgcgg taactgggac
701 tgtataatga ccagttacca atatctaatc attcagaata caacctggga
751 tgaccactgc caattttcca gaccatcacc tattggctac cttgggcttc
801 tctcacaaag aactagagac atatacatta gcagaaggtt gttggggaca
851 ttcacctgga cactatcaga ctcagaggga aatgaaacac cagggggata
901 ctgccttact agatggatgt tgattgaggc cgaattaaag tgctttggaa
951 acactgcagt agccaagtgc aatgagaaac atgatgaaga attttgtgac
1001 atgctaaggt tgttcgattt caacaaacag gccataagga ggctcaaaac
1051 agaggcccaa atgagcatac agctgatcaa caaggctgtc aatgctttaa
1101 taaatgatca gctcatcatg aagaaccact tgagagacat catgggcata
1151 ccatattgta actacagcag atattggtac cttaaccaca catcaacagg
1201 aaagacctca ctaccaaggt gttggcttat ctcaaatgga tcatatctca
1251 atgagaccaa gttttcagat gacatcgaac aacaagctga caacatgata
1301 acagagatgc tacaaaagga atacatagat agacagggca aaactccact
1351 ggggttagtt gacctatttg tttttagcac aagtttctat ctgataagca
1401 tctttctcca cctggtcaaa ataccaaccc atagacacat tgtaggtaaa
1451 ccttgcccaa aaccccacag gctgaaccac atgggcatct gctcctgtgg
1501 tctatacaaa cagccaggtg tgcctgtcag atggaagagg tgaaatccca
1551 cagggccccc gtgacccacc gccaattggc ggtgggtcac gggggcgtcc
1601 atctacagga cgactttagg tgttgaagtt ctgaacacca tgtctctagg
1651 gagcacaact ctcaggactt ttgcatcaag tcctcctgaa actgctgcat
1701 caaacataat gcaatccatc agtgcacaat gaggagttat ttcctcttta
1751 ccacctctct tctttttctc cacaactacc ccagtgtgca tgtgacatag
1801 atccttgaat tgatcccaaa cagcattctc aaactttctt gaatctgctt
1851 tactaagagt gatgtcaatc agttttatgt ctctcctccc ttgtgactca
1901 aggagttttc tgatatcctc tgatccttgg caagtgatga ccatgttccg
1951 aggaagggct tctatcactg cactggttaa cccaggttgg gcagcaaaca
2001 aatcagtcac atcaatacca tgtgaatact ttgcatcttg tttgaattgc
2051 ttcaaatctg ttggctccct aaagaaatgt acatagcaac ccgagctcgg
2101 ttgataaagg gctatctcaa ctgggtcttc tggtcttcct tcaatatcca
2151 tccaggtttt tgcgttggga atcaagttga agcacttgaa atctttgaga
2201 gtcatcaact gagagtaagt taatcctgca gcaaagcctg cagactgtaa
2251 tgacttgttg gaccccccat ttccaatttt ctggggcttg ttgtcttgct
2301 caaggtccac cacagtattt tcccatgctc ttcccacaat cgaggtcctt
2351 gatgcaatat agggccatcc gtctcctgag agacagatct tgtataggat
2401 gttctcataa gggttccttt cacccggtgt gtctgataca aacattccca
2451 gactcttctt aactttcaag attgacttca agataccatc catggtctga
2501 ggtgaaacct taatagtctc taacatgtta ccaccatcaa gcatgcaggc
2551 ccctgctttg acagcagcac ccaaactgaa attgtaacca gagatgttga
2601 gtgaactttt cttagtgtca atcatattca gaattggatg actctgagac
2651 aatctgtcga gatcagatga gttggggtat ttggctgtgt aaatcagccc
2701 taaatctgtc aaagcttgaa cggcatcatt caggtccact tgcccctgtt
2751 tggtcaggca tgctaaagtt aggcttggca ttgttccgaa ctgattgttg
2801 agtaactctg catttttgac atcccaaact ctcacaatgc catcactggc
2851 accctttccc cctccactta ctccagtcat gccaatcatg ttcaaaaggg
2901 ctctcctttg atcaagctgt tgtgaactca aattccccat ataaactcct
2951 gaactcaaag gcctttctgt tctggtgact tttgatttca gtttttctaa
3001 atcagcggcc aggattagta gatcgtctga acttaaggtt ccaactctta
3051 agacactttt ctgctgtgtg gatttgagct caacaagatt gttgactgct
3101 tgattgagat ctctcagtcg ttttaggtcg ccatcatctc ttttctgctt
3151 gcgcatcaat ctctgaacat tactgacctc ggagaagtca agaccatgaa
3201 ggagagcttg agcgtcttta actacctgca actttatgtt ggaacagtag
3251 ccagatagtt cccttcttag ggattgagtc cacaagaatg acctcacttc
3301 cttggaagca ctcattgtcg tgatggttgt ctgacccttg agtgggtctt
3351 gaatgtggtc actccaaagg tttgattagt gcaaagcgca atccaatagc
3401 ctaggatcca ctgtgcg