Sequence of DPV Commelina yellow mottle virus
Commelina yellow mottle virus complete circular genome
ACC No: X52938
Dated: 1993-09-12 | Length: 7489 | CRC: 1457960379
!!NA_SEQUENCE 1.0
ID CYMVCG standard; DNA; VRL; 7489 BP.
XX
AC X52938;
XX
SV X52938.1
XX
DT 05-OCT-1990 (Rel. 25, Created)
DT 12-SEP-1993 (Rel. 36, Last updated, Version 5)
XX
DE Commelina yellow mottle virus complete circular genome
XX
KW complete genome; protease; reverse transcriptase; ribonuclease H.
XX
OS Commelina yellow mottle virus
OC Viruses; Retroid viruses; Badnavirus.
XX
RN [1]
RC (revised by [4])
RA Olszewski N.E.;
RT ;
RL Submitted (02-MAY-1990) to the EMBL/GenBank/DDBJ databases.
RL Olszewski N.E., University of Minnesota, Dept of Plant Biology, 220
RL Biological Sciences Center, 1445 Gortner Ave., St. Paul, MN 55108, USA.
XX
RN [2]
RP 1-7489
RX MEDLINE; 91016835.
RA Medberry S.L., Lockhart Olszewski N.E.;
RT "Properties of Commelina yellow mottle virus's complete DNA sequence,
RT genomic discontinuities and transcript suggest that it is a
RT pararetrovirus.";
RL Nucleic Acids Res. 18:5505-5513(1990).
XX
RN [3]
RP 1-7489
RA Olszewski N.E.;
RT ;
RL Submitted (29-NOV-1990) to the EMBL/GenBank/DDBJ databases.
RL Olszewski N.E., University of Minnesota, Dept of Plant Biology, 220
RL Biological Sciences Center, 1445 Gortner Ave., St. Paul, MN 55108, USA.
XX
RN [4]
RP 1-7489
RA Olszewski N.;
RT ;
RL Submitted (07-DEC-1990) to the EMBL/GenBank/DDBJ databases.
XX
DR SWISS-PROT; P19199; POL_COYMV.
DR SWISS-PROT; P19200; YOR1_COYMV.
DR SWISS-PROT; P19201; YOR2_COYMV.
XX
CC [3] The extra c at position 2672 permits readthrough to result in
CC one
CC ORF (216 kD protein) rather than two (47 kD ORF and 163 kD ORF).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7489
FT /db_xref="taxon:10653"
FT /organism="Commelina yellow mottle virus"
FT /clone="pCoYMV89 (and pCoYMV89)"
FT tRNA 1. .23
FT /note="put. tRNA-Met (put. primer for minus strand
FT synthesis )"
FT old_sequence 300. .302
FT /note="gac was cga"
FT /citation=[1]
FT CDS 496. .1098
FT /db_xref="SWISS-PROT:P19200"
FT /note="ORF 1"
FT /protein_id="CAA37108.1"
FT /translation="MNVWLLKSHTPLGLLPYYSLLDPFCFMNQVDQVKQKLIDWLSSAK
FT KLSEEVIVFTPEVKINLRDLAHNIHIIAHRVALGFKVIYLYLVDIIFPLLKNIQKSQKE
FT SSENLQSVLKIVKEQRRSLKQIEDQLSKVQSELAKLREDYLSRRPLSKQDVEELVVRIS
FT EQPKFIEKQTEALTEELKLKVEEVAKLIHSFKGMVLN"
FT variation 541
FT /note="t in clone pCoYMV100"
FT variation 873
FT /note="t in clone pCoYMV100"
FT CDS 1098. .1505
FT /db_xref="SWISS-PROT:P19201"
FT /note="ORF 2"
FT /protein_id="CAA37109.1"
FT /translation="MSNITESKGYKEALSVTNNYLAPAIGIGGATDVGLTGVTKQLNTT
FT IYLVAKITQQIEDLQSTIKRLEERVQSLEKAKTPVVTQDPNPEIISKLSDIQISLARQR
FT AVNPAISGVSNYTAPTIKKVDRILRVFKKFN"
FT variation 1338. .1340
FT /note="3bp deletion in pCoYMV100"
FT CDS 1506. .7166
FT /db_xref="SWISS-PROT:P19199"
FT /note="ORF 3, 216 kD protein"
FT /protein_id="CAA37110.1"
FT /translation="MATRRLPAVTQTDGSRTATESGVPEYEDQIRSYRNDQRRRHIWAG
FT RGRRLLSIMPGVSSSERTLEMQMNPEVQLQRSMNHRAEAVPAEVLYRTFHGSVNHRVYS
FT HRSEERMMVVNGSQVDRSFIQESSFEVLSRTGIEFIHIGVMLVRIQILHRKFAGTMALI
FT VFRDTRWSDDRAVLAAMEIDLSEGNQIVYVLPDIMMTIKSFYRHIQICVMTKGYDGWQG
FT EDNLLITRGLTGRLSNTSNVGFAYDVKAMVEHLQSNGVKAIKGEKWDAKRFHNGQWNIE
FT PSKVVVPMQPTEMKAVSNYDGTTSLRFSNYAAASTSKPPQYNEKDEEINEDEQEINHSL
FT NLILNDEESTDEDEEYYQYQRYAWSQVGDSTFYYDTDGVWEEIDRCNDLPEYVPSETST
FT PTIDESEAIIDEFLEHAYEQRCDSDESLQSGDPRKYEYPTPQSSPEHLDNESRSRSSSA
FT SSTSMQDDVEEIVRLMKEMRMKKQKKKKAQQALSSQAQEEPIIEENIEENKQAQEEPTQ
FT EEIPTHKENQPEEIQNEEIHVFEEEPAFKHLAAQLSELVNMAESSGQSGVGFQPPVNAQ
FT PDVNMEGPAGYAPATSQATWSNGVNIPVKSANFRWKGPVGNFQLPSAQGKDGAMLVFGM
FT NYSPEVFDRWASITRNYISSFNFNDGGDKIAWMEDLLGETERKIFVSWRMRFKDEYQNL
FT AKIANQDGGTQAILSQIRRIFLGEDPVLGQNTVQNIAFRKLKQLVCPNYQSIRRYLMDY
FT LTLAAETGLMWSETEGPAISEELFTKMPAAIGERVAQAYKIMDPTSAVNLPSRVYFTIN
FT YLTEQCKEASYMRSLKALDFCRDFPIEGYYGRSGEKKKYTARKATKYTGKAHDNHIRVT
FT KAKYQRKCKCYICGQEGHYANQCRNKHKDQQRVAILQSLDLKENEEVVSADDKEEEDDE
FT IFSVLGEEDYQEETIMVLEEDDIQQIIKEFSKFGDLSRRNVGPNFPGPAEVQMGVLKPK
FT SSWRRPIQATLEEINCHHNWTAISTGQLACRSCKQFLAGVQCHHCHAVYCFMCAEAYHD
FT VQAEKILSKDYSFSARGKKGKAVIIEEDEIEGEFLISQLQQENQRLQKQVERLQEELMK
FT LHREKDEALKHSEKASRVFSTIQESDEAELNLIKEELRQFKEETRMAIAQLKEAIIVQE
FT EDTIEERCAMILEEKHTENIYSATAKAEYNGLYNVKVGIKPDNMEPYYINAIVDTGATA
FT CLIQISAIPENYYEDAKVTVNFRSVLGIGTSTQMIKAGRILIGEQYFRMPVTYVMNMGL
FT SPGIQMIIGCSFIRSLEGGLRIEKDIITFYKLVTSIETSRTTQVANSIEELELSEDEYL
FT NIAASVETPSFLDQEFARKNKDLLKEMKEMKYIGENPMEFWKNNKIKCKLNIINPDIKI
FT MGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKG
FT KERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPW
FT TAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQHS
FT QHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKL
FT ATPEGMRSWLGILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKN
FT LPDLQLPPKDSFIIIETDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKSTID
FT AEIQAAIHGLDKFKIYYLDKKELIIRSDCEAIIKFYNKTNENKPSRVRWLTFSDFLTGL
FT GITVTFEHIDGKHNGLADALSRMINFIVEKNDESPYRFTSSVEDALKVCNDDHGRNLIS
FT AVINDIITVLRR"
FT variation 1970
FT /note="a in clone pCoYMV100"
FT variation 2452
FT /note="t in clone pCoYMV100"
FT old_sequence 2672. .2674
FT /note="ccc was cc in [1]"
FT /citation=[1]
FT variation 2977
FT /note="c in clone pCoYMV100"
FT variation 4611
FT /note="a in clone pCoYMV100"
FT variation 4794
FT /note="t in clone pCoYMV100"
FT variation 6302
FT /note="t in clone pCoYMV100"
FT variation 6434
FT /note="c in clone pCoYMV100"
FT variation 7378
FT /note="c in clone pCoYMV100"
FT variation 7462
FT /note="additional t in pCoYMV100"
FT variation 7478
FT /note="c in clone pCoYMV100"
FT variation 7482
FT /note="g in clone pCoYMV100"
XX
SQ Sequence 7489 BP; 2662 A; 1389 C; 1577 G; 1861 T; 0 other;
X52938 Length: 7489 December 21, 2001 16:01 Type: N Check: 5471 ..
1 tggtatcaga gcttggtttg gttatcagaa tgatgagtga gtagtctctc
51 actaggggga gatgtagacg cctacatctc taaggtatgg aaaaactttt
101 gtgtggttat ctttcaataa gtcgaattac tcaggtttta gtcaggattt
151 atggagctat tattattcat attaagtagc agaactgtga agtaggaaag
201 ttctctgaac tgtacagatg ctaataaaaa tgttttgtta gtataaagcc
251 cttaaactgc aaaagtacgt aagccataag acgccaagag agcgcagagg
301 actaagttga gcagaaagat gggtataaaa gctgacaaac ataataaaag
351 gcagaagtct gttttgagta agggaatact tcatggttaa ggctatattt
401 atgaatatat gtataactct gtattatcag gattaaaaga gtagtaagta
451 agacgtacca tggataacca gttactgaaa gcaatttcat actaaatgaa
501 tgtatggttg ttgaagtctc atacccccct aggtctttta ccatattatt
551 cactcctaga tcctttctgt tttatgaacc aagtagatca agtaaaacaa
601 aaattaatag attggttatc ttctgctaag aaattatcag aagaagttat
651 tgtatttacc ccagaagtta agatcaacct tcgtgactta gctcacaata
701 tccatattat agcacatagg gtagccttag gatttaaggt tatctattta
751 tatcttgttg atattatttt tcctttattg aaaaatatcc aaaaatccca
801 aaaagaatca tcagaaaatt tacagtctgt tctcaagatt gtaaaggaac
851 aaagaaggtc cttgaagcag atcgaggatc agctatccaa agtccaatct
901 gagctcgcaa agcttagaga agactattta tccagaagac ctctgtctaa
951 gcaagacgtg gaggagcttg ttgttcggat ctctgaacaa cccaagttca
1001 ttgaaaaaca gacagaagct ttgacagaag agttgaagct aaaggtcgaa
1051 gaagttgcta aattaattca ttccttcaaa gggatggtat taaattaatg
1101 agcaacatca ctgaatcaaa aggttacaaa gaagctctct cagtaaccaa
1151 caattatctt gctccagcaa tcggtatagg aggcgctaca gacgttggcc
1201 tcactggtgt gaccaagcaa ttaaacacca caatctatct ggtagcaaag
1251 attacacagc agattgaaga cttacagtca acaatcaaaa ggcttgaaga
1301 aagagttcag agcctcgaaa aggctaaaac tccagtagta actcaggatc
1351 caaatcctga gattatctca aagttatctg acattcaaat cagcttagca
1401 agacaaaggg cagttaaccc tgctatatca ggagtcagta actacacagc
1451 gcctactatc aaaaaggtgg acagaatact tcgcgtattc aaaaagttca
1501 actaaatggc gacaagaaga ttgccagcag tcacacagac tgatggatca
1551 agaacggcaa cagaatctgg tgttccagaa tatgaagatc aaatccggtc
1601 ttatcggaat gatcaaagaa gacggcatat ctgggcgggt cgtggacgcc
1651 gcttactatc aattatgcca ggagtgagtt cttctgaaag aactctagag
1701 atgcagatga accctgaggt tcaattacaa cgaagcatga atcacagagc
1751 tgaagcagtg ccagctgagg tactgtaccg cacatttcat gggtcggtaa
1801 atcatagagt ctactctcac cgatctgaag aaaggatgat ggtcgtcaac
1851 ggttctcaag ttgatagatc atttattcaa gaatctagct tcgaagtcct
1901 gtccagaaca ggaattgaat ttattcatat tggagtcatg ttagtaagga
1951 ttcaaatcct tcacagaaag ttcgcaggaa caatggctct gattgtgttc
2001 agagacacaa ggtggtccga tgatcgggca gttctggccg ccatggaaat
2051 tgatttgtcc gaaggcaacc aaattgtgta tgtcctacct gacattatga
2101 tgacaattaa gtcattctac aggcatatac aaatctgcgt catgactaaa
2151 ggttatgatg gatggcaagg agaggacaat ctccttatca ctagaggctt
2201 aaccggaaga ctttcaaata cttccaatgt cggtttcgcc tatgatgtta
2251 aagcaatggt ggagcactta cagtctaatg gtgtaaaagc cattaaagga
2301 gaaaaatggg atgctaaaag attccacaat gggcagtgga atattgagcc
2351 atcaaaggtt gtagttccta tgcaacctac tgaaatgaaa gcagtatcaa
2401 actatgacgg aaccacttct ttaaggttct ccaattatgc tgctgcatcc
2451 acatcaaagc caccacagta caacgagaag gatgaagaga tcaatgaaga
2501 tgaacaagaa attaatcact ctctaaatct catcctcaat gatgaagaat
2551 ctactgacga agatgaagag tactaccaat accaaaggta tgcgtggtca
2601 caagtcgggg attcaacatt ttattatgat acagatggag tctgggaaga
2651 aatagataga tgtaatgatc tcccagaata tgtgccctca gaaacctcaa
2701 caccaacaat tgatgaatca gaggctataa ttgacgaatt ccttgagcat
2751 gcctatgaac agcggtgtga ctcagatgaa tcattacaat ctggagaccc
2801 aagaaaatac gagtatccta ctccacaaag ctctccagaa catctagata
2851 atgaatctag atcgagatca tcctcagcat catccacaag tatgcaagat
2901 gatgtggaag aaattgttag attaatgaaa gaaatgagga tgaagaagca
2951 aaagaaaaag aaagctcagc aagctttgag cagtcaggct caggaggagc
3001 caattattga agaaaatatt gaagaaaaca agcaggctca ggaggagcct
3051 acacaagaag aaatccctac acacaaagaa aatcagcctg aagaaattca
3101 gaatgaagaa attcatgtat tcgaagagga gccagcattc aagcatttgg
3151 cagcccagtt atctgaactg gttaatatgg cagaatcctc aggacaatca
3201 ggcgtaggat ttcaacctcc agttaacgct caacctgatg ttaacatgga
3251 aggacctgca ggatatgcac ctgcaacatc acaagcaaca tggtccaatg
3301 gggttaatat ccctgttaaa tcagcaaact tcagatggaa gggaccagtt
3351 ggcaactttc agttaccatc cgcacaaggc aaagacggtg caatgttggt
3401 atttgggatg aattacagtc ctgaagtctt cgacagatgg gcatcaataa
3451 caagaaatta tatctcaagt ttcaacttca atgatggagg agacaaaata
3501 gcatggatgg aagatctcct tggcgaaact gaaagaaaaa tctttgtttc
3551 atggagaatg aggtttaaag atgaatatca aaacctcgca aagattgcaa
3601 atcaagacgg aggaacgcag gctattctca gccaaatcag aagaatcttc
3651 ctaggagaag atccagttct gggtcaaaat acagtccaga atattgcgtt
3701 cagaaaattg aagcaattgg tatgtccaaa ctatcaaagc ataagaaggt
3751 atcttatgga ctacctaacc ctagcggcag aaacagggtt aatgtggtcg
3801 gaaactgaag gaccggccat atctgaagaa ttattcacca aaatgcctgc
3851 agcaatcggt gaaagagttg cccaagcata taaaatcatg gatcctacga
3901 gtgcagtgaa tctgccctca agggtatact ttacaataaa ttatctgacg
3951 gaacaatgca aggaggcaag ttatatgagg tcactgaagg ccttagactt
4001 ctgcagagac tttcccatag aaggctacta tggaaggtca ggagaaaaga
4051 agaagtatac agcaagaaaa gccacaaaat acacgggaaa agctcatgat
4101 aatcacatcc gtgttacaaa ggccaaatac caaagaaaat gcaaatgtta
4151 catctgtggc caagaagggc attatgcaaa tcaatgccga aataagcaca
4201 aagatcaaca aagggttgca atcttgcagt ccttagattt gaaggaaaat
4251 gaagaagtcg tctcagcgga cgataaggaa gaagaagatg atgaaatctt
4301 ctcagttctt ggtgaagaag attaccaaga agaaacaatc atggtgctgg
4351 aagaagatga catccagcaa atcatcaaag aattctcaaa atttggcgat
4401 ctatctagaa gaaatgttgg ccctaacttt cctggaccag cagaagttca
4451 aatgggagtt cttaaaccaa aatcaagttg gagaaggcct attcaggcta
4501 cattagaaga aatcaattgt catcacaatt ggacagcaat ctccacagga
4551 caactagcct gcagatcttg caagcaattc ttagcaggtg tccaatgtca
4601 tcactgccat gcagtctact gctttatgtg cgccgaggca tatcatgatg
4651 tacaagctga gaaaatcctt tccaaggatt attctttttc cgcccggggt
4701 aagaagggga aggcagtaat aattgaagaa gatgagattg agggagaatt
4751 tttaatctct caattacaac aagaaaatca gcgacttcag aagcaagttg
4801 aaaggcttca agaagaactt atgaagttgc acagagaaaa agatgaggca
4851 ttaaaacatt cagaaaaagc ctcaagagtc ttctcaacaa ttcaagaatc
4901 agatgaagct gaattaaatc tgattaaaga agagctacgg caattcaaag
4951 aagaaaccag gatggcaata gctcagctga aagaagcaat tatagttcaa
5001 gaagaagaca caattgaaga aagatgtgct atgatactag aagaaaagca
5051 cactgaaaac atatactctg ctactgcaaa ggctgagtat aatggcttat
5101 ataatgtgaa ggttgggata aaacctgaca atatggagcc atactacatc
5151 aacgcaatcg tggatactgg tgccacggct tgtcttattc aaatttctgc
5201 aataccagaa aattactatg aagacgcaaa ggtgacagta aacttcagaa
5251 gtgtcctagg aattgggaca tcaactcaaa tgatcaaggc aggaagaatc
5301 cttattggtg agcaatactt ccgtatgcca gttacctatg tcatgaatat
5351 gggtctcagt ccagggatcc aaatgataat cggatgttca ttcataaggt
5401 ccttagaagg aggactcagg attgaaaagg atatcatcac tttctataag
5451 ttggtgacat caatcgagac atccaggaca acacaagtgg ctaactccat
5501 tgaagaattg gagctttcag aagatgaata tctcaacata gccgcttcag
5551 tagaaacacc ttcatttctg gatcaagaat tcgcaagaaa gaacaaggat
5601 ctgcttaaag aaatgaaaga gatgaagtat ataggggaga atccaatgga
5651 attctggaag aacaacaaaa ttaagtgcaa gcttaatatc atcaatccag
5701 atatcaaaat catgggaaga ccaattaagc atgtcacacc tggtgacgaa
5751 gaagctatga caagacaaat caatttgctt ctacaaatga aggtcatccg
5801 cccctcagaa agcaaacaca ggtctacagc tttcattgtt agatctggta
5851 cagaaattga ccccatcaca gggaaggaga agaagggcaa agagcgcatg
5901 gtgtttaact acaagctctt aaatgagaat actgaatctg atcagtattc
5951 actcccaggg atcaatacaa taatcagcaa ggtgggtaga tccaaaatct
6001 actcaaaatt tgacttaaaa agtggcttct ggcaggtagc catggaagaa
6051 gaaagtgtcc catggacagc attcctagca ggcaacaaac tttatgaatg
6101 gcttgtaatg ccatttggtc tcaaaaatgc gcccgctata tttcaaagga
6151 agatggacaa cgtcttcaaa gggacagaaa agttcatagc tgtttacatt
6201 gatgatatac ttgttttctc agaaacagca gaacaacatt cgcagcacct
6251 ctatacaatg ctgcagcttt gcaaggaaaa tgggttaatc cttagcccta
6301 ccaaaatgaa gataggtact ccggagatcg atttcttagg ggcttctctc
6351 ggatgtacaa aaatcaagct tcagccccac atcatttcaa aaatatgtga
6401 cttctcagat gaaaaactag caacacctga aggtatgaga agctggttgg
6451 gtatcctctc atatgctaga aattatattc aggatatcgg caaattggtg
6501 caaccactca gacaaaagat ggcaccaaca ggagacaaga gaatgaatcc
6551 agaaacatgg aagatggtaa gacagataaa agaaaaggtg aaaaatctcc
6601 ctgatcttca gttaccacct aaagattcat tcatcataat agagacggat
6651 ggttgtatga ctggctgggg agccgtctgc aaatggaaaa tgtcaaagca
6701 tgatccaaga agcaccgaaa gaatttgtgc ctatgctagt ggatcattca
6751 atccaataaa atcaaccatc gatgcagaga ttcaggcggc aatccatggc
6801 ctggataaat tcaaaattta ttatcttgat aaaaaggagc tcataattcg
6851 ctcagactgt gaagcaatta tcaaatttta caacaagacg aacgaaaata
6901 agccgtctag agttagatgg ttaacatttt cagatttctt aacaggtctt
6951 ggaatcacag ttacattcga gcacatagat ggaaagcata atggcttagc
7001 agatgctcta tcaagaatga taaatttcat tgtggagaaa aatgatgaat
7051 ctccatacag gttcacttca tcagtagagg acgcactaaa ggtctgcaat
7101 gatgatcacg gaagaaattt gatatccgcc gtcatcaatg acatcatcac
7151 agtactgagg agatgaatac ttagccatga agtagcgtgc gaatattacc
7201 tatgccttta ttcgcagcgt tagtggcact gaaaggcata aagtttgttc
7251 gttcttatca aaaacgaatc ttatctttgt aacttggtta cccggtatgc
7301 cggttcccaa gctttatttc cttatttaag cacttgtgta gtagcttaga
7351 aaaccaacac aacaacacca agaatacttt gagtgtagta attggttcta
7401 gttttagtct gaaaaatctc ttcggagaaa gtaagacaag atccattata
7451 tgtaataaaa cttttccgca acctatttcc tgtcttaaa