Sequence of DPV Rice tungro bacilliform virus
Rice tungro bacilliform virus (infectious clone) ORF's P24, P12, P194 & P46
ACC No: X57924
Dated: 1991-06-04 | Length: 8002 | CRC: 1201766367
!!NA_SEQUENCE 1.0
ID RTBVPHIL standard; DNA; VRL; 8002 BP.
XX
AC X57924;
XX
SV X57924.1
XX
DT 04-JUN-1991 (Rel. 28, Created)
DT 04-JUN-1991 (Rel. 28, Last updated, Version 1)
XX
DE Rice tungro bacilliform virus (infectious clone) ORF's P24, P12, P194 & P46
XX
KW pararetrovirus.
XX
OS Rice tungro bacilliform virus
OC Viruses; Retroid viruses.
XX
RN [1]
RP 1-8002
RA Hull R.;
RT ;
RL Submitted (20-FEB-1991) to the EMBL/GenBank/DDBJ databases.
RL R. Hull, John Innes Institute, Colney Lane, Norwich, NR4 7UH, UK
XX
RN [2]
RP 1-8002
RX MEDLINE; 91252204.
RA Hay J.M., Jones M.C., Blakebrough M., Dasgupta I., Davies J.W., Hull R.;
RT "An analysis of the sequence of an infectious clone of rice tungro
RT bacilliform virus, a plant pararetrovirus.";
RL Nucleic Acids Res. 19:2615-2621(1991).
XX
DR SWISS-PROT; P27499; YP12_RTBVP.
DR SWISS-PROT; P27500; YP24_RTBVP.
DR SWISS-PROT; P27501; YP46_RTBVP.
DR SWISS-PROT; P27502; POL_RTBVP.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8002
FT /db_xref="taxon:10654"
FT /organism="Rice tungro bacilliform virus"
FT /clone="pJIIS2, pJIIB4"
FT /isolate="Philippines"
FT misc_feature 1. .16
FT /note="minus-strand DNA primer"
FT CDS 69. .668
FT /db_xref="SWISS-PROT:P27500"
FT /note="no ATG"
FT /gene="ORF P24"
FT /protein_id="CAA40995.1"
FT /translation="VPKRDLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC
FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP
FT TKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE
FT LRTLKIAEQNSKAIEKFEQEIKDLREILEFLKHQAT"
FT CDS 665. .997
FT /db_xref="SWISS-PROT:P27499"
FT /gene="ORF P12"
FT /protein_id="CAA40996.1"
FT /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKSAADVNL
FT ASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI
FT KRKYPA"
FT CDS 994. .6021
FT /db_xref="SWISS-PROT:P27502"
FT /gene="ORF P194"
FT /protein_id="CAA40997.1"
FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE
FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN
FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG
FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD
FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR
FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQ
FT AMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE
FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE
FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI
FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI
FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR
FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG
FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN
FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS
FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKTCET
FT QYCKTCSDQLALEVTEVKKPTKEETMIDDLKLNVKNLEFRVTILEHKVEMQNLQDKFET
FT MQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSG
FT STHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIKYK
FT LGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFARKH
FT GGRPPLFSNIPETYNKIPHLHSYQPQPILGYKNEIGNQSLITMVKELEALGFIGDDITK
FT NRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAA
FT FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF
FT HHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI
FT LIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIV
FT DKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWN
FT IIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYAS
FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR
FT WIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSESI
FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA"
FT misc_feature 5685. .5698
FT /note="plus-strand DNA primer"
FT CDS 6042. .7211
FT /db_xref="SWISS-PROT:P27501"
FT /gene="ORF P46"
FT /protein_id="CAA40998.1"
FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSSRLSHVSRGLLDHL
FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLKDQVSLLQKQNSELRARIATN
FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNNLQKD
FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESILSLSQKKGEDLLQKGVVIFN
FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE
FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED
FT EGEVVYISKYTKIIKVTKEHAWAWPEHDGDTMSCTTSIEDEWIHRMDNA"
FT TATA_signal 7373. .7379
FT polyA_signal 7610. .7616
XX
SQ Sequence 8002 BP; 3262 A; 1245 C; 1452 G; 2043 T; 0 other;
X57924 Length: 8002 December 21, 2001 16:02 Type: N Check: 5673 ..
1 tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta
51 gtcaaactaa ttacataagt tccaaagagg gatcttattt ctcaaaatat
101 tgagtcacgt tacgaaaaac ttgaattctt agacttagca gtctggggaa
151 aagagaaaaa acaaaaatat ttactatcta ccgataatat tagcttttat
201 tgttactttg atactagtaa aactagtgaa tcagaaagaa agcatacctt
251 tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc
301 attctgaaaa aaccaaaaat attaaggaag aattagaaaa atatagtcag
351 ttcctagata agatattaga tttaaaacct actaaaaaac aagttgaaaa
401 actattagaa aatcaaaact taattagcaa gaactttgat tatatcaaag
451 aacaaaacac tcaactagaa aaatccctaa gaaaaacagt taagttagaa
501 gactccatta atactctatt agtagaaata caacaagcta gacctaagga
551 agtagaatta agaactctta aaatagcaga acagaactct aaggcaatag
601 aaaaatttga gcaagaaatt aaggacttaa gagaaatcct ggaattcctt
651 aagcatcaag ctacatgagc gctgattacc caactttcaa ggaagccctt
701 gaaaagttta aaaacctaga atcagataca gccggaaaag ataagtttaa
751 ttgggtattt actctagaaa atataaagtc agccgcggac gtaaatttag
801 catctaaggg tttagtacaa ctttacgctt tacaagaaat tgataaaaag
851 attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag
901 tagttcagca ggagctatag tacctgcagg tagtaacacc caaggtcagt
951 acaaagcacc acctaagaaa ggaattaaaa gaaaatatcc agcatgagcc
1001 ttagaccatt tactggtact tctagaacta taacccaaga ttcaacctct
1051 gaatctaata taaaaaaggg aaaaaactca acaaaaagag aattaataga
1101 agaagtagat gttaatcaag aagtagaaaa ctttgattgg aaaaaactat
1151 caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaagtt
1201 aagttaaaac aacaatctat agtttcagca tataaagaag aagctattag
1251 tgtaactcat aatgcatata ctactacttt atttccacaa gaagtaatta
1301 aaaatgttaa gaatcaggga aaactttatt atcatatagg catgatggcc
1351 ataggagtta aaggacttca tagaagaaaa ataggaacta aagtcatgat
1401 aatgttttat gatgatagtt tcggcaaagc tagagaagct agcattggat
1451 caatagaaat ggatatgaac gccggttgtg gagtattcta ctcctgcccc
1501 gactttgcaa aatatattaa agatttatca caccttaaga tagggataca
1551 aaccctagga tatgaaaatt atgaaggaaa aaatctttcg gtagcaatca
1601 aaactatagg aagattgacc accaatatac agtcaaaata taagataaat
1651 gtaaaagata ttgtagaaca gatatcatca caaggaatca ttatggtagc
1701 acccatggaa atagattcat cacacctaga tgggaatgaa tgggatctta
1751 gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcctta
1801 atatatcaaa atctacaagg aggagaatcc ttaagatttt caaattataa
1851 gcaaactaga atgcatgatc caactgaaaa taattcagat gaagatgaag
1901 atttaaaaat cttaggagaa caactaaata ttaaaatggc aagattttac
1951 acaatgcaaa ccccagaaga agaattacga gaagtaattc aacaattaga
2001 aagagaaaaa caagccatga tagcaaaact agaagctaaa atgaaagagt
2051 catccaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat
2101 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg
2151 attaactgga tgggaagact tagatcagga ttccatagaa accgaagaaa
2201 taactgaatg ggaaaatcct aatcaagtac ttcatagaga aattagagca
2251 tataaatcag tatccgaaca aatagaagat atattcggag aactactaaa
2301 ggaacacgga aactatgata tggccctcaa aaacctagaa gaaaaatacg
2351 acctagataa aatagaaaag gccaaatcta tagaagaaat agctaagtca
2401 tctacatcgt cagaaattag gccaactaaa cgacctaaag aagaacaaac
2451 agcctatgaa gatgatatga gagatgattg gaaaagaaaa gaattaacag
2501 taaatcccat agaagcctca aaagatagaa attttgaaag aataggaagt
2551 tcatataaga aaaactttta ccctagtaga agtgagatat taaacttaga
2601 taacgttccc ccacaatttt actatgacca gctagtaacc tgggaaggaa
2651 tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg
2701 tcttggatgg atggtagaat aacaggatta gtgttatatt tagtccaaga
2751 ttggatatct aaaaatcagg cagcttacaa tgatataaaa tctagaggtg
2801 atagacctga aaacttcgta aaaatggtaa aagataggtt cttaatagaa
2851 gatcctacag atgaaagaag aacagcacta caaaggttag cacaaagaga
2901 attagaagcc ttaaactgcg aagatcctac taaaattcaa ccatttatgg
2951 ctgaatatct taagaaagcc tcagaagcca aaaaaggatt tgatgtagtt
3001 tatgtagaaa gactctttga tagactacca gaagcagtag gaaaggtagt
3051 aaaagcggac tttgttaaag acggtaattc ctatgaagca ggaataggaa
3101 tagcagtttc atatatatcc acatggatga gagcaaaatg cattaaggaa
3151 acagaagcta aaactcaaaa gaaagcatcc ttagcattct gtagatccat
3201 atatactata ggagattata agaaacgaaa aatcctaaaa agagttacaa
3251 actataacaa aaataggaga aaaaactatg tcagaagacc aagtattaag
3301 aaaaaatgta gatgttatat ctgtcaagat gaaaatcacc tggctaatag
3351 atgtcctaga agatatacta atcaggctag agcaagtcta atagatggat
3401 tagacgaaga tatagtatct atagcatcag atgacgagga tattgaaaat
3451 ttccttgaaa taatagaact tgatgaattt atagcacatt ctagtcaaga
3501 acatgaacat acatgggaaa tcggaggaaa gaaagataag gtatgtgaaa
3551 tttgcagtta ttttacggat tataataaaa ctgttagttg taaaacttgt
3601 gaaacccaat actgcaaaac atgttctgat caactagcac tagaagtgac
3651 agaagtcaaa aaacctacaa aagaagaaac aatgatagac gacctaaaat
3701 taaatgttaa aaatctagaa tttagagtca ccattctaga acataaggta
3751 gaaatgcaga atcttcaaga taaattcgaa actatgcaaa ttagaaataa
3801 atcagaaata acagaaatac caacaacctc attagctatg agagcaaatg
3851 aatcaaacta cataaaaaca tcaattaata aaactgcagg ttgttatgta
3901 gaaacaaaaa tctcattcaa caatgaaaat agaatcataa cagctctaat
3951 agattcgggt tcaacacata atataatatg tccaacattg ataccagcat
4001 catggattaa taatacacat agagaaatta taatgtttgc tgtagacaat
4051 agcaaatata atctgaatca agagctaata gatgatataa aattacaatt
4101 ccaagaagtt gacgaaactt ttggaataaa atataaatta ggacaaacct
4151 atgtagcacc taagccaaca aaaacattta taataggaca cagattcctt
4201 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca
4251 aaaaactacg ggaatatacc caacagccag acatgaactt aaatcagagt
4301 ttgcgcgaaa gcatggtgga cgcccgccat tattttcaaa cattcctgaa
4351 acctataaca aaattcctca tttgcattca tatcagcctc aaccaatatt
4401 aggatataag aatgaaatag gaaatcaaag tttaatcact atggtgaaag
4451 aattagaagc acttggattc ataggagatg acattactaa aaatagaaca
4501 acgtgggtat gtgacttcaa aatcataaac ccagatatta atataacttg
4551 tgcaacaatt ccatacacac cagcagataa agaagtattt gaaaaacaaa
4601 ttaaggagct actagataat aagttaatca agaaagctga tccaacatgc
4651 aggcatagaa cagcagcatt tatagtaaga aaccattctg aagaagtagc
4701 tcagaaacct cgaatagtct ataactataa acgtttaaat gataatatgc
4751 atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata
4801 cagaaagcta atatattttc taagtttgat ttaaaagcag gatttcatca
4851 tatgaaatta aaagatgatt tcaaagattg gactactttt acatgctcag
4901 aaggattata tacttggaac gtctgtccat ttggtatagc taacgctcct
4951 tgtgcatttc aaagatttat gcaggaatcc tttggagatt taaagtttgc
5001 attattatat atagatgata tacttattgc atctaataac gaaaaagagc
5051 atatagaaca tcttaagatt ttctttaata gagtaaaaga agtaggatgt
5101 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct
5151 tggagtagaa attaaagaag gaaagattag tcttcagccg catatagttg
5201 ataagatcaa aaaatttgat aaaaataaac tcaacaccct aaagggacta
5251 caagcatatc tagggttact caattatgcc agaggataca tcaaagacct
5301 atcaaagcta gtaggaccac tttataaaaa gacaggaaaa aatgggcaaa
5351 gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag
5401 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat
5451 tatagagaca gatgcgtcag aagaaggctg gggagcagtc ttagtctgta
5501 agccagataa atatagtggc aaggacactg agaaaatagc aggatatgca
5551 tcaggaaact ttggagagaa gaaaacctgg actagtttag attatgaaat
5601 agaagctata aatgaagccc taaacaagtt ccagatatac ttagacaaag
5651 attttacaat tagaactgat tgtgaagcaa tagtgaaggg gataaaaaca
5701 gaagactata aaaagagatc aaagaccaga tggatcaagt taagagataa
5751 tctcttaaag gatggataca agcctacctt tgagcatatc aagggaaaca
5801 aaaacttttt accaaacttc ttatcccgtg agggagattt tattttaaaa
5851 tgtcttcaaa accccgattc tacggaatca tattctatag attcgtcaga
5901 atcaattcca ctatatatcg attcgaaaga atcacattct atagagtctg
5951 atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg
6001 ctaaaggaaa agagtgccta actaagatcg gaggcatcac catgaatata
6051 gagtacccgt actcaatcca cataatagac aagaacaagg ttccgatcta
6101 cgatcaagga aatctcttcc acactgagaa gtcctcaaga ctttcacatg
6151 tgtccagagg tttgctggat catctcttta ctttttcgtc tgataatact
6201 gagcgagtta ggaagctcca catattagcc gattatcttt acctattaga
6251 aagtgagaga gagtcatata aaaatgagtg gattagcttg aaggatcaag
6301 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc
6351 aacaaagaaa taatagaggg actgagagag ccagttaaaa agccaatata
6401 cacaacccag gataaagaga ggctccgtgt tttcttttgc gaagaaagaa
6451 gcatggaata tatatattat catataaaaa ggctagctca gcagagctat
6501 tattcccacc taaataattt acagaaggat tgtgaaccct ttagaggggt
6551 ctacatgtct ttcttaacta atgttaaatt cctagtatta tgtgaagctg
6601 gatactggac tgtaccagat atagaaacta atactacaga gtctatatta
6651 agtctatccc agaagaaagg agaagatctt ctacaaaagg gagtagtaat
6701 atttaatgag cttgaaggag gatatcagct ttctccaagg tttattggag
6751 acctttatgc tcatggtttt attaaacaaa taaacttcac gaccaaggtt
6801 cctgaaggat tgccgccaat catagcggaa aaacttcaag actacaagtt
6851 ccctggatca aacaccgtct taatagaacg agaaattcct cgctggaact
6901 ttaatgaaat gaagagagag acacagatga ggaccaactt atatatcttc
6951 aagaattatc gctgtttcta tggttattca ccattaaggc catacgaacc
7001 tataactcct gaagaatttg ggtttgatta ctacagttgg gaaaatatgg
7051 ttgatgaaga cgaaggagaa gttgtataca tctccaagta tactaagatt
7101 atcaaagtca ctaaagagca tgcatgggct tggccagaac atgatggaga
7151 cacaatgtcc tgcaccacat caatagaaga tgaatggatc catcgtatgg
7201 acaatgctta aagaagcttt atcaaaagca actttaagta cgaatcaata
7251 aagaaggacc agaagatata aagcgggaac atcttcacat gctaccacat
7301 ggctagcatc tttactttag catctctatt attgtaagag tgtgtaatga
7351 ccagtgtgcc cctggactcc agtatataag gagcaccaga gtagtgtaat
7401 agatcatcga tcaagcaagc gagagctcaa acttctaaga gagcaagaga
7451 ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct
7501 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa
7551 tatgtttgta cttatgattg tatttctcaa aacctatccg ctgcatgaat
7601 aaagctctta tatttatcct acacccttgt gataaaacat gaagtcatac
7651 tcgttctaag attaagtgtt ctaaaaatac ttcgaagcat tgaaaagggg
7701 gctaaagggg gaaaaagtac cgtcaggccg tgttatggca agggaagaag
7751 taccatgaat accctataga tgttagaagg aagataagaa ctaagtatct
7801 tatgaacaat gggtagctga tttctgatta tcattaacaa gtatcgttat
7851 aatccataag ctttgaaaga tctgctagtg tggataccaa aaggctgtcg
7901 tggttcgccc agtcgacgga tgaggtcata aacgaagcac tagtaggtaa
7951 ctaagaggct tagggatgaa gcaacgagaa aagttagggg ggtgcctaga
8001 aa