Sequence of DPV Artichoke mottled crinkle virus
Artichoke Mottled Crinkle Virus complete genome
ACC No: X62493
Dated: 2005-04-18 | Length: 4789 | CRC: 260564894
!!NA_SEQUENCE 1.0
ID AMCVCG standard; genomic RNA; VRL; 4789 BP.
XX
AC X62493;
XX
SV X62493.1
XX
DT 29-MAY-1992 (Rel. 32, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE Artichoke Mottled Crinkle Virus complete genome
XX
KW genomic RNA.
XX
OS Artichoke mottled crinkle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RX MEDLINE; 94292901.
RX PUBMED; 8021582.
RA Tavazza M., Lucioli A., Calogero A., Pay A., Tavazza R.;
RT "Nucleotide sequence, genomic organization and synthesis of infection
RT transcripts from full-length clone of artichoke mottle crinkle virus";
RL J. Gen. Virol. 75:1515-1524(1994).
XX
RN [2]
RP 1-4789
RA Tavazza M.;
RT ;
RL Submitted (07-OCT-1991) to the EMBL/GenBank/DDBJ databases.
RL M. Tavazza, E N E A Dip. Sviluppo e Ricerche Agroindustriali, Div
RL Ingegneria Genetica CP, Via Anguillarese 301, 00060 Santa Maria di
RL Galeria-Roma, ITALY
XX
FH Key Location/Qualifiers
FH
FT source 1. .4789
FT /db_xref="taxon:12142"
FT /mol_type="genomic RNA"
FT /organism="Artichoke mottled crinkle virus"
FT /clone_lib="Oligo dT and random primed cDNA library in pUC9
FT clone(s)"
FT /isolate="AMCV-Bari Dr.Gallitelli isolate"
FT /map="complete genome"
FT CDS 180. .1070
FT /db_xref="UniProt/TrEMBL:Q65014"
FT /product="protein of 33 kDa"
FT /protein_id="CAA44355.1"
FT /translation="METIKSWICPKKEIFVGDFAIGVNRKVPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFLVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAALPIVPLLSYATRA
FT RAVSVKAFGNELSLNVRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVVASTGRPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVK"
FT CDS 180. .2636
FT /db_xref="GOA:Q96606"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q96606"
FT /note="readthrough stopcodon of p33"
FT /transl_except=(pos:1068. .1070,aa:OTHER)
FT /product="protein of 92 kDa"
FT /protein_id="CAA44356.1"
FT /translation="METIKSWICPKKEIFVGDFAIGVNRKVPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFLVELLKTDCAAKWEWFMKRRQRGDYVIPLSIAALPIVPLLSYATRA
FT RAVSVKAFGNELSLNVRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVVASTGRPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSGVLLPQEVLEVRAGPPNAKDRNIY
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGRLTRTPQPTKGSFGRLSPFRKAV
FT CEKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK
FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK
FT WDRFDKPVAIGLDASRFDQHCSVEALQYEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYV
FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMIHGYMRHLGINEFSLANCGDDCVLIVER
FT RNLKQIQRTLPEYFLNLGFTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK
FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDVPRKHQRIDTVTN
FT VHKWRGSGGSHTVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI
FT LDSAVA"
FT CDS 2667. .3833
FT /db_xref="GOA:P14836"
FT /db_xref="HSSP:2TBV"
FT /db_xref="UniProt/Swiss-Prot:P14836"
FT /evidence=EXPERIMENTAL
FT /product="coat protein of 41 kDa"
FT /protein_id="CAA44357.1"
FT /translation="MAMVKRNNNTGLIPVSTKQLMALGAAAGASALQGFVRNNGAAIVG
FT KVVDVGQKVYKAVKKRGGKKQQQIKHVGGTGGAIMAPVAVTRQLTGSKPKFTGKTSGSV
FT TVTHREYLSQVNMSTGFQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYSFNSVLLH
FT YVPLCATTEVGRVAMYFDKDSEDPEPADRVELANYSVLAETAPWAERALWVPTDRIKRF
FT CDDSSTLDHKLIDLGQLGVATYGGAGTNAVGDIFISYSVTLYFPQPTNTLLSTRRLDLA
FT GTPVTASGPGYILLTRTPTVLTMTFRATGTFVISGAYRCLTSTVLGLTGGVNVNSITVV
FT DNVGTSSSFFINCTVSNLPSVITFTTTGITSATIQCNRATRQNDVSLI"
FT CDS 3871. .4440
FT /db_xref="GOA:Q65015"
FT /db_xref="InterPro:IPR005332"
FT /db_xref="UniProt/TrEMBL:Q65015"
FT /product="protein of 22 kDa"
FT /protein_id="CAA44358.1"
FT /translation="MDTEYEQVNKPWSELYKETTLGNKLMVNVGMEDQEVPLLPSNFLT
FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI
FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW
FT KVMYQEDALKVLKPSKKKASRTDSSV"
FT CDS 3903. .4421
FT /db_xref="GOA:Q65016"
FT /db_xref="HSSP:1R9F"
FT /db_xref="InterPro:IPR004905"
FT /db_xref="UniProt/TrEMBL:Q65016"
FT /product="protein of 19 kDA"
FT /protein_id="CAA44359.1"
FT /translation="MERVIQGNDAREQANGERWDGGSGGTTSPFKLPDESPSWTEWRIH
FT NDETDSNKDNPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGDSVNYAASRFLG
FT VNQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLAPVEVESNVSRGRPEG
FT AEAFKEESE"
FT misc_RNA 2635. .4789
FT /evidence=EXPERIMENTAL
FT /note="subgenomic RNA 1"
FT misc_RNA 3856. .4789
FT /evidence=EXPERIMENTAL
FT /note="subgenomic RNA 2"
XX
SQ Sequence 4789 BP; 1234 A; 981 C; 1326 G; 1247 T; 1 other;
X62493 Length: 4789 May 10, 2005 10:10 Type: N Check: 1088 ..
1 naaattctcc aggatttctc gacctcggtt gttttatctg gtagtttgcg
51 ctaatcttcg ctttgcgtag ggaatttctc tccttaatac atttctgagt
101 taaggggttt gaaggttggg tctatctttt gagtttatct cactagagga
151 taaattgtaa cttccaacaa ataagcgata tggagaccat caagagctgg
201 atttgtccta agaaagagat ttttgtaggg gattttgcga tcggagtgaa
251 taggaaggtt ccggtggaca tctttcagtt ggtgtgtcgt gtggttctga
301 gatacatgag gacagggaaa atagagtgcg attctgacag catgactaag
351 tttttggtag agttacttaa aaccgattgt gctgctaaat gggagtggtt
401 catgaagaga cggcagagag gtgattatgt catccctcta tctatagctg
451 ctctcccaat cgtgccgctg ttgagttatg ccactagggc acgcgcagtc
501 tcagtcaagg cattcggcaa tgagctatcg ctcaatgttc gcgtgcctag
551 accttctgtg cctaagaaag gcctactcct cagactggcg gcaggtctag
601 cgttagctcc tatatgcgcg ctggccatgt acgctaccct acccagggaa
651 aaactgtctg tattcaagct gagaactgag gcacgtgcac atatggaaga
701 tgagagagaa gcaacggatt gcttggtggt tgagcccgct cgtgagctca
751 aagggaagga tggtgaggat ctactcactg gtagtaggat gacgaaggtg
801 gtagcatcca caggacgtcc tcggaggaga ccgtatgccg caaaaattgc
851 gcaggtcgcg agggccaaag tgggctatct taagaatagc cccgagaata
901 ggcttatcta ccagagagtg atgatcgaga taatggacaa ggactgcgtc
951 aggtatgttg acagggatgt catattgcca ttggctattg gatgctgttt
1001 tgtctatccg gacggagttg aggagtcggc tgcactatgg ggttcccagg
1051 aatcccttgg tgtgaaatag ggaggcctag tacgtctacc tggggttgta
1101 acacagatca atcgagatat cccatctggt gtgttgcttc cccaggaggt
1151 gctagaggtt cgtgcaggac ctcccaatgc taaggaccgt aatatatata
1201 tggttgcagg ttgcccatca caggcacggt tcttagtgca taatcactgc
1251 ctgaaaaacc ttaaaagggg tcttgtggag agagttttct gcgttgagag
1301 aaacgggaga cttactcgca ctccacaacc taccaaagga tcctttggac
1351 gtctttcccc gttcaggaaa gcggtttgtg agaaggttgg agttgcccac
1401 cggttggggt atgacggttt cctgtcatac tacagcggcg cgaagctccg
1451 tacttacaca cgagctgtgg agagtctgca tattactcct gtctctgaga
1501 gagatagtca tttgactacc tttgtcaagg ctgagaaaat atcgacgtct
1551 aagggtgacc cagctcctag ggtgattcag cctcgaaacc ctaggtacaa
1601 tgtggaactt ggaagatatc tacggcatat ggaatccaag ctgatgaaag
1651 ctgtcgatgg cgttttcggt gagacaacgt gcatcaaagg atatactgca
1701 gatgaggtgg gtgcaatttt tcgggagaag tgggataggt ttgataaacc
1751 cgtcgccatt ggtcttgatg cgtccaggtt tgatcaacac tgttccgttg
1801 aggctttgca atatgagcat agcttctaca gggccatgta ccctggcaac
1851 aagcttttga gcaagttgtt ggaatggcaa ctccataata aaggtaaggg
1901 ttatgtccct gatgggacta taacttatcg taaggagggg tgccgtatga
1951 gtggggatat caatacttca ttgggcaact atctgttgat gtgcgctatg
2001 atacacgggt acatgcgcca tttgggaatt aatgaattta gtctggcaaa
2051 ctgcggggat gactgcgttc taattgtgga gcggaggaat cttaagcaga
2101 tacagaggac cctacctgag tatttcctaa atttagggtt tacaatgaag
2151 gtggagccac ctgtgtttca attggaagag gttgaattct gccaggcaca
2201 cccagtacag tttcaaggtg gttggaagat ggtccgcaat gtccgcactg
2251 ctatgagcaa agatgtacat tgtgtcaata atatacgtga cttggccacg
2301 aggagggcct ggagtaatgc tcaacaccat ggtgggctgg cattgagtgc
2351 cggaatacct gtggttgaga aattttactc taggttcacg ttgtatgacg
2401 tgcctcgtaa acatcaacgg attgacactg taaccaatgt tcataagtgg
2451 cgtggatctg gtggtagcca tactgtgacc cctgagtcaa gggctagctt
2501 ttgggctgcc ttcggtttga cgggggatga gcagttggct ttggaggatc
2551 gtctggatag atgggagatg gatttgtttg gagaggaggg tgttgacgct
2601 catgagccca gcatccttga ctccgccgta gcttgaccaa gaacacataa
2651 aacacaggac tagcacatgg caatggtaaa gagaaataat aacactgggc
2701 ttatcccagt tagcacgaag cagttaatgg cattaggagc ggccgcaggg
2751 gcttcagccc tgcagggatt tgtaaggaac aacggggcgg ctattgtcgg
2801 aaaggtcgtc gatgttggac agaaggtgta caaagcagtg aagaagcgag
2851 gaggtaagaa acagcagcag attaagcatg taggtggtac aggtggggcc
2901 attatggccc cggttgcagt tacgagacaa cttaccggga gtaagcctaa
2951 gtttaccggt aagacgtctg ggtctgtgac ggttacgcac cgtgaatact
3001 tatcacaagt gaatatgtcc acaggtttcc aggtaaacgg gggaattgtt
3051 ggcaatttgt tacagctcaa cccgttgaat ggtactttgt tctcatggtt
3101 gcccgcgata gcgtccaact ttgatcagta ctcgttcaac agcgttttgc
3151 tacattatgt ccctctgtgc gcaaccactg aggtggggcg agtggctatg
3201 tactttgata aagattcgga agatcctgaa cctgctgata gggttgagtt
3251 ggcaaactac agcgtactag cagagacagc cccctgggct gaacgtgcgc
3301 tctgggttcc taccgatagg attaagagat tttgtgatga cagttccaca
3351 ttagatcaca aacttatcga tctaggacag ttgggcgtgg ctacatatgg
3401 tggcgctgga actaatgctg ttggggatat cttcatctcc tacagtgtta
3451 cgttatattt ccctcaacct acgaatactc tccttagcac tagaaggctc
3501 gaccttgctg gcacaccggt cacagcatcc ggacccgggt acatcctgtt
3551 aaccaggacg cccactgtac ttacaatgac atttcgtgcc actggcacgt
3601 ttgtcatctc tggagcatat cgttgtctaa cttcaacggt gctcggcctg
3651 acaggtgggg tcaacgtgaa cagcattaca gttgtggaca atgttggaac
3701 gagcagttca tttttcataa attgcactgt ctcaaaccta ccgtccgtta
3751 tcacgtttac taccactggt ataacatctg ctacgataca gtgcaatcgt
3801 gctacgcgac agaacgatgt ctctttaatt tagtgagtcc tgtgaggggc
3851 ctcttgaact agaccagttc atggatactg aatacgaaca agtcaataaa
3901 ccatggagcg agttatacaa ggaaacgacg ctagggaaca agctaatggt
3951 gaacgttggg atggaggatc aggaggtacc acttctccct tcaaacttcc
4001 tgacgaaagt ccgagttgga ctgagtggag gatacataac gatgagacgg
4051 attcgaataa agataatccc cttggtttca aggaaagctg gggtttcggg
4101 aaagttgtat ttaagagata tctcagatac gacaggacgg aaacttcatt
4151 gcacagagtc cttggatctt ggacgggaga ttcggttaac tatgcagcat
4201 ctcgatttct cggtgtcaac cagatcggat gtacctatag tattcggttt
4251 cgaggagtta gtgtcaccat ttctggaggg tcgagaactc ttcagcatct
4301 ctgtgagatg gcaattcggt ctaagcaaga actgctacag cttgccccag
4351 tcgaagtgga aagtaatgta tcaagaggac gccctgaagg tgctgaagcc
4401 ttcaaagaag aaagcgagta ggacagactc ttcagtctga ttctgtggaa
4451 atgagagtaa ttctgacata gcatacaggt tactcgtgtt gggttctaga
4501 tgttatgatg acgagctggt cgggctccgc acgggtttgg tcgcccgggg
4551 atggagatat ggaaagggtc tcgtgtgctg ttagtcagtc gaaagacgtg
4601 cttgcaacat gggcctataa ccagataagt catagcaata ctagccaaca
4651 tgaattggat tcctgtttac gaaagttagg tgtcacttgt ggagacagag
4701 ttagacacgg ttgatctcac ccttcggggg ggctatagag atcactggaa
4751 gcactaccgg acaaccggaa cattgcagca atgcagccc