Sequence of DPV Potato leafroll virus
Potato leaf roll virus RNA sequence
ACC No: X74789
Dated: 2006-11-14 | Length: 5882 | CRC: -1713302250
ID X74789; SV 1; linear; genomic RNA; STD; VRL; 5882 BP.
XX
AC X74789;
XX
DT 28-JUL-1994 (Rel. 40, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 6)
XX
DE Potato leaf roll virus RNA sequence
XX
KW .
XX
OS Potato leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5882
RA Hulanicka D.;
RT ;
RL Submitted (25-AUG-1993) to the EMBL/GenBank/DDBJ databases.
RL D. Hulanicka, Inst. of Biochemistry and Biophysics, Polish Academy if
RL Sciences, ul. Pawinskiego 5a, 02-106 Warsaw, POLAND
XX
RN [2]
RP 1-5882
RX PUBMED; 7732757.
RA Palucha A., Sadowy E., Kujawa A., Juszczuk M., Zagorski W., Hulanicka D.;
RT "Nucleotide sequence of RNA of a Polish isolate of potato leafroll
RT luteovirus.";
RL Acta Biochim. Pol. 41(4):405-414(1994).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5882
FT /organism="Potato leafroll virus"
FT /isolate="the polish isolate"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12045"
FT CDS 70. .813
FT /note="ORF 1"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:Q84835"
FT /protein_id="CAA52789.1"
FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH
FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI
FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP
FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA
FT LTGFPVYVPSEDYLEGSFLQKELQE"
FT CDS 203. .2122
FT /note="ORF 2"
FT /db_xref="GOA:Q84836"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:Q84836"
FT /protein_id="CAA52790.1"
FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY
FT SAAPTPLYKSWALPSSLNLTTQPLPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS
FT EMLFASWNSVKEVSLKAASVTLWAIINIWFGLYWTLARLITLFLWTFSIEALCLILLGC
FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS
FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK
FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH
FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE
FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA
FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDVATSAPPMDKM
FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKQNSSPPTSTQSTS
FT GAPKKKAVPQASGSAGTSPATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL
FT NSKA"
FT CDS 1540. .3387
FT /partial
FT /note="ORF 3"
FT /db_xref="GOA:Q84837"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q84837"
FT /protein_id="CAA52791.1"
FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA
FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA
FT QTKEARKAWREEQAKQFTSYFNAIYKWGAQEEGCPPGFRKCGHIPGYYHPRTRGETQWG
FT QKLCQVHPELAEKTTGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK
FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV
FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG
FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS
FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL
FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL
FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP
FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH"
FT CDS 3588. .4214
FT /note="ORF 4"
FT /db_xref="GOA:Q84838"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q84838"
FT /protein_id="CAA52792.1"
FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR
FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL
FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA
FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK"
FT CDS 3613. .4083
FT /note="ORF 5"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q84839"
FT /protein_id="CAA52793.1"
FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSRWLWSRPLGNPGVEDAEEEA
FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS
FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG"
FT CDS 4215. .5741
FT /partial
FT /note="ORF 6"
FT /db_xref="GOA:Q84840"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q84840"
FT /protein_id="CAA52794.1"
FT /translation="VDSGSEPGPSPQPTPTPTPQKHERFIAYVGIPMLTIQARENDDQI
FT ILGSLGSQRMKYIEDENQNYTNVSSEYYSQSSMQAVPMYYFNVPKGQWSVDISCEGYQP
FT TSSTSDPNRGRSDGVIAYSNADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHF
FT REGQLLERDATISFHVEAPTDGRFFLVGPAIQKTAKYNYTISYGDWTDRDMELGLITVV
FT LDEHLEGTGSANRVRRPPREGHTYMASPREPEGKPVGNKPRDETPIQTQERQPDQTPSD
FT DVSDAGSVNNSGSTESLQLEFGVNSDSTYDATVDGTDWPRIPPPRHPPEPRVSGNSRTV
FT IDFSPKADLLENWDAEHFDPGYSKEDVAAATIIAHGSIQDGRSMLEKREESVKNKTSSW
FT KPPLSKAVSPAIAKLRSIRKSQPLEGGTLKKDATDGVSSIGSGSLTGGTLKRKVTIEER
FT LLQTLTTEQRLWYENLKKTNPPAAIQWLYEYQPPPQVDRNIAEKPFQGRK"
XX
SQ Sequence 5882 BP; 1640 A; 1485 C; 1430 G; 1327 T; 0 other;
x74789 Length: 5882 14-NOV-2006 Type: N Check: 3132 ..
1 caaaagaata ccaggggaaa ttgcagcttt agcgcataaa ctctacactc
51 attgcaaacg ttatagcata tgattgtatt gacccagtct ggaaccttgc
101 tttttgacca aagatttaaa ctctcaaagt ttctcttcgt tgtcattgca
151 acaggctttc ctcttctcct gcagcaagcg agcttaattt acggctataa
201 tcatgaacag atttaccgca tatgccgctc ttttctttat gttctccctt
251 tgctcaactg caaaagaggc aggatttcaa catccggcct tcaacttccg
301 aggcacctcc actatgagtg ccttgagtgg ggattactct gcggcaccca
351 ccccgctata caaatcgtgg gccctaccat cgtcattaaa cttgacgacc
401 caaccactgc cgccgcttac agatcggagc tactacgagt tagttcaagc
451 tcttatatcc aaaatgcggc tggattgtca aacggttggg gacatgacat
501 ggaggcattt gtcagaaatg ctatttgcct cctggaactc cgtgaaagaa
551 gtatccctca aagcggcctc cgtgacctta tgggcaatta tcaacatttg
601 gttcggtctc tattggacgc ttgcaaggtt gatcactttg ttcctctgga
651 ctttcagcat agaagcctta tgcttaattt tgctcggttg tataaccagc
701 ttgatctaca agggcgcgct aagtctttca gagcacttac cggttttcct
751 gtttatgtcc cctctgaaga ttatttggag ggcagctttc tccaaaagga
801 attacaagaa tgagagggct gtggaaggat acaaagggtt ttcggtccca
851 cagaaaccgc caaagtctgc cgtaattgaa ctacaacatg aaaacggcag
901 ccatctcggg tacgcgaact gcattcgctt gtacagtgga gagaacgcct
951 tggtgacagc tgaacactgt ctagaaggcg ccttcgcaac gtcgttgaaa
1001 actggaaaca ggattccgat gtcgactttc tttcccattt tcaaaagtgc
1051 ccgtaatgat atctccatac tagtaggtcc acccaactgg gaaggtctac
1101 tatcagtcaa aggagctcat ttcattacag ctgacaaaat cggcaaaggt
1151 cctgcctctt tctacactct tgagaaaggg gagtggatgt gccatagtgc
1201 caccatagat ggagcccatc accagttcgt gtctgtttta tgcaacactg
1251 gacccggata ttccggaaca gggttttggt cttcaaagaa tctgcttggt
1301 gtgcttaaag gcttcccact ggaagaggag tgtaactaca atgttatgtc
1351 tgttataccc tcgatcccag gaatcacttc cccaaattat gtgtttgagt
1401 cgaccgccgt aaaaggccgc gtcttctcgg atgaagctgt gaaagagcta
1451 gagcgggaag catccgaagc cgtcaagaag cttgccagat ttaaatcact
1501 taccggcaag aactgggctg atgattatga ctccgatgag gattacggtc
1551 tggagagaga ggctgcaaca aatgcgcccg cagagaaaac tgctcaaaca
1601 aactcagcag agaagactgc tccatcaact tcagcagaga aaactgctcc
1651 aacaaacaag cctttaaatg ggcaagcggc accgtccgcc aaaacaaacg
1701 gcaactccga catccccgac gtcgctacaa gcgcaccacc aatggacaaa
1751 atggtcgaac agatcatcac agctatggtg gggagaatca atctctcgga
1801 gatagaggag aagatagtga gcagggtgtc tcagaaagcc ctgcagaagc
1851 ccaaacaaaa gaagcgcgga aggcgtggag ggaagaacaa gcaaaacagt
1901 tcacctccta cttcaacgca atctacaagt ggggcgccca agaagaaggc
1951 tgtcccccag gcttcaggaa gtgcgggcac atccccggct actaccaccc
2001 ccgcaccaga ggcgaaaccc agtgggggca aaaactctgc caagttcatc
2051 ccgagctggc ggagaaaaca acaggattcg gctggccaaa agccggatct
2101 gaagctgaac tccaaagcct gaatctacag gctgccaggt ggctccaacg
2151 cgcggagtcg gccactatcc ctggcgcaga agcaagaaag cgcgtgattg
2201 agaaaacagt ggaggcatac agaaattgtg taactaacgc cccactgtgc
2251 tcccttaaat ccaaactgga ttgggctggc tttcaacaag atatccgtga
2301 agcagtccag tcccttgagc tagacgctgg tgtaggcatt ccctatatcg
2351 cgtatggcct ccccacacac cgaggatggg ttgaggacca taagcttctc
2401 ccagtgctca ctcagctgac ctttgaccga ctacagaaga tgtcggaggc
2451 cagctttgag gatatgagcg cagaagagct ggttcaagaa gggctctgtg
2501 atcctatcag actatttgtc aaaggagagc cccacaaaca gagcaaactc
2551 gatgaaggcc gctaccgcct catcatgtct gtttccttgg tggatcaact
2601 ggtagcccgg gttctgttcc aaaatcagaa caaaagggaa atttccctgt
2651 ggaggtctgt gccttccaaa cccggttttg gcctttcaac tgacactcaa
2701 actgctgaat tcttggagtg tcttcaaaag gtgtctggag cgccatctgt
2751 ggaagaattg tgtgcaaatc acaaggagta cacgcgccca accgactgtt
2801 ccggtttcga ctggtcagtc gcgtattgga tgctggagga tgatatggag
2851 gtgagaaatc gcctgacatt taataacacc cagctcacca agcgccttcg
2901 ggccgcctgg ttgaagtgca taggaaattc cgtcctgtgc ctgtccgatg
2951 gcactttact tgcccaaact gttcccggtg tgcaaaagag cggaagttac
3001 aatacaagtt cctccaactc tagaatccgg gttatggctg cctatcactg
3051 tggcgccgac tgggcaatgg ccatggggga cgatgctctc gaagccccca
3101 actccgacct ggaggagtat aaaacactag gtttcaaagt cgaggtaggt
3151 cgagaactcg aattctgttc acacatcttc agaaatccga ccctcgccgt
3201 tccggtcaac accaacaaaa tgctttacaa gttgatccat ggttataatc
3251 cggaatgtgg caatccagaa gtgattcaaa actatctggc tgcagtattc
3301 tctgtgctgc aggaactccg acacgatcgt gagctcgttg ccaagctcca
3351 ccagtggttg gttccgagtg ccaccacaaa agaacactga aggagctcac
3401 taaaactagc caagcatacg cgagttgcaa gcattggaag ttcaagtctc
3451 gttacatcaa ccggacaaaa tagattataa atttttagcg ggatttgctt
3501 taggattctc atccgcaatc ccattttcag tagccggttt atattttgtt
3551 tacctaaaga tttcctccca cgtgcgatca attgttaatg agtacggtcg
3601 tggttaaagg aaatgtcaat ggtggtgtac aacaaccaag aaggcgaaga
3651 aggcaatccc ttcgcaggcg cgctaacaga gttcagccgg tggttatggt
3701 cacggcccct gggcaaccca ggcgtcgaag acgcagaaga ggaggcaatc
3751 gccgctcaag aagaactgga gttccccgag gacgaggctc aagcgagaca
3801 ttcgtgttta caaaggacaa cctcatgggc aactcccaag gaagtttcac
3851 cttcgggccg agtctatcag actgtccggc attcaaggat ggaatactca
3901 aggcctacca tgagtataag atcacaagca tcttacttca gttcgtcagc
3951 gaggcctctt ccacctcctc cggttccatc gcttatgagt tggaccccca
4001 ttgcaaagta tcatccctcc agtcctacgt caacaagttc caaattacga
4051 agggcggcgc caaaacttat caagcgcgga tgataaatgg ggtagaatgg
4101 cacgattctt ctgaggatca gtgccggata ctgtggaaag gaaatggaaa
4151 atcttcagat accgcaggat ccttcagagt caccatcagg gtggctttgc
4201 aaaaccccaa ataggtagac tccggatcag agcctggtcc aagcccacaa
4251 ccaacaccca ctccaactcc ccagaagcac gagcgattta ttgcttacgt
4301 tggcatacct atgctaacca ttcaggccag ggagaacgac gaccagatca
4351 tattgggttc tttagggagc caaaggatga aatatataga ggacgagaac
4401 cagaactaca caaatgttag ttctgagtat tactctcaat cgagcatgca
4451 agccgtccct atgtattact ttaatgtccc gaaagggcaa tggtcagtcg
4501 acatcagctg cgaagggtat caacccacta gcagcacctc ggatccaaac
4551 cggggtagga gtgacggggt gatcgcgtat tcaaacgcgg actccgatta
4601 ttggaatgtt ggtgaagcgg atggtgtcaa aatttcgaag ctacgcaacg
4651 ataacaccta ccgccaaggt cacccagaac ttgaaattaa ctcgtgtcat
4701 tttcgcgagg gccaactcct tgaacgggac gctacaatta gcttccacgt
4751 tgaagcgcct actgatgggc gattctttct cgttggtccc gctatccaga
4801 aaaccgcaaa gtataactat actatctcat acggtgactg gacggaccga
4851 gacatggaac tggggctgat caccgtggtg cttgatgaac atttagaagg
4901 cactggttcg gctaacagag tgcggcggcc cccacgggag ggccacacct
4951 atatggcctc gccgcgcgaa ccggaaggaa aaccggttgg aaataaacca
5001 agggacgaaa ccccgataca aacgcaggaa agacaacctg atcaaactcc
5051 gtctgacgac gtatccgatg ctggttcggt aaacaacagc ggctcaactg
5101 agtcgctgca attggagttc ggggtaaact cagatagtac ctacgatgct
5151 acagtcgatg gtacagactg gcccagaatt cctccaccaa ggcacccacc
5201 tgaacctaga gtttccggca attcaagaac tgttattgac ttttctccga
5251 aagccgatct attggagaat tgggatgccg aacacttcga ccctggttat
5301 tccaaagaag atgtcgctgc tgctactatt atagcgcacg gcagtattca
5351 agatgggcga agtatgttgg agaagagaga ggaaagtgtc aagaacaaaa
5401 cctcctcctg gaagcccccg ttatctaaag cggtgagccc agccatagcc
5451 aaattgcgct cgattcgcaa atcccaaccc ctcgagggag ggacccttaa
5501 gaaagacgct actgatggtg tctcatctat tggcagtggt tctctaacag
5551 gtggcacgct taagaggaag gtaactattg aagagcgttt actgcagacc
5601 ttaacaactg aacaaaggct gtggtacgag aatttgaaga aaactaaccc
5651 tccagctgct atccaatggc tgtatgaata tcagccacct ccccaagtag
5701 atagaaacat agctgaaaag ccattccaag ggaggaaatg agtcgactca
5751 cgacttaaaa ctgagtgtcc gccggacatt aagcggaacg aaagccgaaa
5801 ggtgattagg ctctcaacgc ctgctagaga ccgtcgaaag acgcgactgt
5851 gtagccaaga tcctcttaca tggttgtgta gt