Sequence of DPV Olive latent virus 1
Olive latent virus 1 complete genome
ACC No: X85989
Dated: 1996-08-28 | Length: 3699 | CRC: -1941716038
!!NA_SEQUENCE 1.0
ID OLV1GENOM standard; RNA; VRL; 3699 BP.
XX
AC X85989;
XX
SV X85989.1
XX
DT 17-MAY-1996 (Rel. 47, Created)
DT 28-AUG-1996 (Rel. 49, Last updated, Version 6)
XX
DE Olive latent virus 1 complete genome
XX
KW capsid protein; RNA dependent RNA polymerase gene.
XX
OS Olive latent virus 1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RA Grieco F., Savino V., Martellli G.P.;
RT "Nucleotide sequence of the genome of a citrus isolate of olive latent
RT virus 1.";
RL Arch. Virol. 141:825-838(1996).
XX
RN [2]
RP 1-3699
RA Grieco F.;
RT ;
RL Submitted (30-MAR-1995) to the EMBL/GenBank/DDBJ databases.
RL F. Grieco, CNR, Centro Studio Virus e Virosi, Univ. of Bari, Via Amendola
RL 165/A, I- 70126 Bari, ITALY
XX
DR SPTREMBL; Q83938; Q83938.
DR SPTREMBL; Q83939; Q83939.
DR SPTREMBL; Q83940; Q83940.
DR SPTREMBL; Q83941; Q83941.
DR SPTREMBL; Q83942; Q83942.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3699
FT /db_xref="taxon:47669"
FT /organism="Olive latent virus 1"
FT /strain="citrus"
FT CDS 61. .2232
FT /db_xref="SPTREMBL:Q83938"
FT /note="ORF2"
FT /transl_except=(pos:664. .666,aa:OTHER)
FT /product="RNA dependent RNA polymerase"
FT /protein_id="CAA59977.1"
FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQNSILAI
FT EDVEHFEDINECFEESSGGQSQRTKVVAEGAYSPVKSERTRRVRKQKAKFVKYLVNEAR
FT AEFGLPKATEANRLMVQHFLLRRCKDWGVVTSQCHNNVALALTLVFVPTGDDLLARVVM
FT NTYKTRSAVRGMDNLQGEGWWNNRLGIGGQAGLAFRAKXGCLERRPGFSTSVSRGNHPD
FT LVVKPSGHPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFYVEGPNGLQDPPK
FT PVRGAFNSLNKFRDLYTKNSWRHSPVTNEQFLMNYSGRKLTIYKEAVDSLSHQPLSLRD
FT SRLKTLLKAEKLNLSKKPHPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEIT
FT VFKGFTLEQQGEIMFSKWKKYVKPVAVGLDASRFDQHVSWEALQYEHEFYIRDYPNDKQ
FT LKWLLKQQLSNIGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVYGLKEHLGIN
FT LSLANNGDDCVIVCEKADLKKLTSSIEPYFRQFGFKMEVEKPVDIFERIEFCQTQPVFD
FT GSQYIMVRKPSVVTSKDVTSLIPCQNEAQYAEWLQAVGECGMSINGGIPVMQNFYQMLQ
FT TGVKRTKFTKTGEFQTNGLGYHSRYMHRVAQTISPETRLSLYLAFGITPDLQEALEVFY
FT DTHTLELDDVVPVDTYQVSGEHLINGLPN"
FT CDS 61. .666
FT /db_xref="SPTREMBL:Q83939"
FT /note="ORF1, unknown function"
FT /protein_id="CAA59978.1"
FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQNSILAI
FT EDVEHFEDINECFEESSGGQSQRTKVVAEGAYSPVKSERTRRVRKQKAKFVKYLVNEAR
FT AEFGLPKATEANRLMVQHFLLRRCKDWGVVTSQCHNNVALALTLVFVPTGDDLLARVVM
FT NTYKTRSAVRGMDNLQGEGWWNNRLGIGGQAGLAFRAK"
FT CDS 2216. .2440
FT /db_xref="SPTREMBL:Q83940"
FT /note="ORF3, unknown function"
FT /protein_id="CAA59979.1"
FT /translation="MDYQTEVSEDNVSVRGRARRGTEDKKHNGSGLTGVKRHAVSETSQ
FT KSQSRYWSNGTMTNIAEEQTITVTYNFNF"
FT CDS 2443. .2613
FT /db_xref="SPTREMBL:Q83941"
FT /note="ORF4, unknown function"
FT /protein_id="CAA59980.1"
FT /translation="MAVCRCCDTSPGITLFPYFAILILILAILVVGTPNQQYHHSPSTY
FT EYKTQHISIAK"
FT CDS 2635. .3447
FT /db_xref="SPTREMBL:Q83942"
FT /note="ORF5"
FT /product="capsid protein"
FT /protein_id="CAA59981.1"
FT /translation="MVNFYWDSRIQRWFYESGPQRVRTYIKRISPHQMASLPARKTKRS
FT PPNRGNLQVLPVIAPVAGGVISTEGHVPRITTTNEQTVVRNTEIISAINSAALGAIFGN
FT YVTVIPSNLSWLAGLSDLYSKYRWRKLRFIYLPVCPTSTQGNVSMSLSFDRIDTQPTSI
FT TQMQQGYRAITFPPYAGYDGAMALASFGNIPGMVVVDVDCARMDKLWYPNVTLATFLAM
FT APTSRTDTCGVTLFTASDQGPAAATNFGQVFCQYEIEFIEPVNPTVNL"
XX
SQ Sequence 3699 BP; 1006 A; 873 C; 904 G; 916 T; 0 other;
X85989 Length: 3699 December 21, 2001 16:03 Type: N Check: 6860 ..
1 tagtatacat accaagtata cggatatcgg tgcgagccct gcacagctaa
51 agtgtataaa atggagttac ccaaccaaca taagcaaact gctgctgaag
101 gtttcgtttc tttccttaac tggctttgta acccctggag acgccaacgt
151 acagtcaacg ctgctgtcgc cttccagaat agcattcttg ctattgagga
201 cgtagaacac ttcgaagata tcaacgagtg ttttgaggaa tcgtctggag
251 gccaatcgca gcgcactaag gttgtcgccg aaggggctta ctctcccgta
301 aaatccgaac gcacccgccg agtccgcaag caaaaggcca aattcgtcaa
351 atatttggtc aatgaggctc gtgccgagtt tggtctcccc aaagctacag
401 aggccaatcg actcatggtg caacacttcc tgctccgaag gtgtaaggat
451 tggggggttg tcacatccca gtgccacaac aatgttgcac tcgccttgac
501 tctcgtgttt gtcccaacag gggatgattt gctggcgcga gtagtgatga
551 acacgtacaa gacgaggtct gcggtccgtg ggatggacaa cctccaaggg
601 gaggggtggt ggaacaacag gcttggcata ggtggccagg ccggcttggc
651 ctttcgggcc aaataggggt gcctagagag gaggccgggg ttttccacgt
701 ccgtttcgcg tgggaatcac cccgatctgg tggtcaaacc atcaggacac
751 cccgagaaac agcgtcagtt gttacgctat agtggaattg gcggccattt
801 attaatcggc atccacaaca actctctctc caatttgcgt aggggcttaa
851 tggagagagt tttctacgtc gagggaccca atgggctcca agacccccct
901 aaacccgttc ggggagcttt caactccctg aataagtttc gagacctata
951 taccaaaaat agttggcgtc attcccctgt aaccaatgaa caattcttga
1001 tgaattactc gggcaggaaa ctaactattt acaaagaagc ggttgatagt
1051 ttgtcgcatc aaccacttag cttacgggac tcgaggctga agactttact
1101 taaggccgaa aaactcaatc tgagcaaaaa gccacatcca gcaccccggg
1151 ttatccaacc caggtcaccc cggtacaacg tttgtttggg tcgttatcta
1201 cgtcactatg aacaccacgc gttcaaaacc attgctaaat gctttgggga
1251 gatcacggtc tttaaagggt ttactctaga gcaacaaggc gaaatcatgt
1301 tctcgaagtg gaagaaatat gttaagcccg tcgccgtcgg actcgatgca
1351 agtcggttcg accaacacgt gtcatgggaa gcacttcaat acgagcatga
1401 attttacatt agagattacc cgaatgataa acagctaaaa tggttgttga
1451 agcaacaact gagcaatatt ggcacagcgt ttgctagtga tggcatcata
1501 aagtataaga aggagggttg tcgtatgagt ggagatatga acaccagttt
1551 gggcaattgc attctcatgt gtgcgatggt atacgggttg aaggaacacc
1601 tgggcataaa tttatccctt gccaataatg gggatgactg cgtcattgtc
1651 tgtgagaaag cggatttgaa gaaattgaca agcagcatcg aaccatattt
1701 caggcaattt ggattcaaaa tggaggtgga aaaacccgtg gacatatttg
1751 aacgcattga gttttgccaa acccaacctg tgtttgatgg gtcccaatac
1801 atcatggttc gaaaaccctc ggtagtcaca tcgaaggatg tcactagctt
1851 aatcccatgc caaaatgagg ctcaatatgc agaatggctg caagctgtag
1901 gtgagtgtgg aatgagtatt aatggtggaa ttcctgttat gcagaatttt
1951 taccaaatgc tccaaactgg agttaaacgc accaaattca ccaagaccgg
2001 cgagtttcag acgaacgggt tggggtatca ctctagatat atgcatagag
2051 tggcccagac catttcgccc gaaacccgtt tatccttgta tttagcgttc
2101 ggtatcacac cagaccttca ggaagcactg gaggtcttct atgataccca
2151 cacgcttgag ttggatgatg ttgtcccagt tgatacctac caagtatcag
2201 gagagcattt gatcaatgga ttaccaaact gaggttagtg aggataacgt
2251 gagcgtacgc ggtcgggcta ggagggggac tgaggataag aagcacaacg
2301 gatcgggctt aactggcgtt aagcgtcatg cggtgagtga aacatctcag
2351 aaatcacagt caaggtactg gtcaaacggc acaatgacca acatagctga
2401 agagcagacc attaccgtga catacaactt taacttttag ttatggctgt
2451 gtgtcgctgt tgtgatactt caccaggtat tacattattc ccttacttcg
2501 ctattcttat tctcatcctt gcaatattag ttgttggtac tccaaatcag
2551 caatatcatc attctcctag tacttacgag tataagactc aacacatttc
2601 gatcgcaaaa tagacatttc gcaactctct caacatggtt aatttttact
2651 gggatagtcg aattcagagg tggttctacg aaagtggacc acagcgtgtc
2701 cgcacttata taaagcggat ttcaccccac caaatggcaa gtctgcctgc
2751 tcgcaagact aaaaggtcac ccccaaatag gggcaaccta caagttcttc
2801 cggttatagc acccgttgct ggtggagtga tttctacaga agggcacgtt
2851 cctcgaatta ctactactaa tgagcagact gtcgtgagaa acacagaaat
2901 cataagtgcc atcaactctg ccgctctagg tgccattttc ggcaactacg
2951 tcacggtaat cccgtccaat ctatcatggt tggcaggttt gtccgatttg
3001 tacagcaagt accgatggcg caaactccgg ttcatttatc taccggtttg
3051 cccaaccagc acacaaggca atgtttctat gtcactatca ttcgacagaa
3101 tcgatacgca gccaacaagc atcactcaaa tgcaacaggg ttaccgtgcc
3151 attacttttc cgccttacgc ggggtatgat ggtgctatgg ccttagcgtc
3201 attcggcaac attcctggaa tggttgtcgt ggacgtggac tgcgctcgaa
3251 tggacaagtt gtggtaccct aatgttaccc tggccacctt tctggccatg
3301 gcaccaacat ccagaacgga tacctgcgga gttaccctgt ttactgcaag
3351 tgatcaaggg ccagccgctg ccaccaactt tggccaggtg ttctgccagt
3401 atgaaatcga atttatagaa ccagtgaacc caactgtcaa tttgtaacca
3451 cacaacgatg ggtgagttac gtaactgtgc taatccctaa aagttttagt
3501 agagcggtaa gcaatccgga tcctggtaga caggtttaac gggctggggg
3551 tggtgccccg gccgtcgcat cacttgctga tacaatctac aagactcatg
3601 ggagggtctg cacaggtatc cacgccgagg acgggacgaa agtctcggac
3651 ggggggtagt ggacccaaca ccagattgag gggcttttgc cccacccca