Sequence of DPV Strawberry vein banding virus
Strawberry vein banding virus complete genome
ACC No: X97304
Dated: 2005-04-18 | Length: 7876 | CRC: 1435154809
!!NA_SEQUENCE 1.0
ID SVBVCOMGN standard; genomic DNA; VRL; 7876 BP.
XX
AC X97304;
XX
SV X97304.1
XX
DT 01-JUN-1996 (Rel. 47, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Strawberry vein banding virus complete genome
XX
KW complete genome; ORFI; ORFII; ORFIII; orfIV; ORFV; ORFVI.
XX
OS Strawberry vein banding virus
OC Viruses; Retroid viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RX DOI; 10.1023/A:1008039024963.
RX MEDLINE; 98318753.
RX PUBMED; 9654684.
RA Petrzik K., Benes V., Mraz I., Honetslegrova-Franova J., Ansorge W.,
RA Spak J.;
RT "Strawberry vein banding virus--definitive member of the genus
RT Caulimovirus";
RL Virus Genes 16(3):303-305(1998).
XX
RN [2]
RP 1-7876
RA Petrzik K.;
RT ;
RL Submitted (03-APR-1996) to the EMBL/GenBank/DDBJ databases.
RL K. Petrzik, Institute of Plant Molecular Biology, Dept. Plant Virology,
RL Branisovska 31, Ceske Budejovice, CZ-370 05, Czech Republic
XX
FH Key Location/Qualifiers
FH
FT source 1. .7876
FT /db_xref="taxon:47903"
FT /mol_type="genomic DNA"
FT /organism="Strawberry vein banding virus"
FT /clone="pSVBV-E3"
FT /specific_host="Fragaria sp."
FT CDS 67. .1053
FT /db_xref="GOA:Q88438"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/TrEMBL:Q88438"
FT /gene="ORF I"
FT /protein_id="CAA65972.1"
FT /translation="MSEEEIRMDQPQGGHDEYIFEEEGTYAHDVAIDSTLLKEIEKKDL
FT ELTSEEVFKTPSLWKKFLKARKNICISCVSSREYPIEIAQANGLTEIPFFNREEIESKK
FT RVLKPEDRKKIDFIHIGSVKIMIKSTFRTGIDSPISVALLDRRMKNAKDAVFGGVKGNL
FT SYGKLIFTYNPKISVSLRDPTINKTLTLAHFFEKEELMHEGNHPYTISYKIGYTLSNSH
FT HSLEFRPKEPICIDDLFSTVGKISQAPLQEITPIENYWRMSLGNTSRRLLGERPRMIVI
FT EDDEEETPLDRHTERALARSQSRMLGLRPLEDLRTTSRKINTLAHQL"
FT CDS 1058. .1543
FT /db_xref="GOA:Q88439"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="UniProt/TrEMBL:Q88439"
FT /gene="ORF II"
FT /protein_id="CAA65973.1"
FT /translation="MSFRREPHIYYKKQYLTLNTQNVERGEPEYLYVGGRGIEGCLKHL
FT NNINVVCGNIHMMNYYICKTLGIKTSIYRNTPEDNSNPGLLSLLGKPQESSFQNPLEKK
FT IDNLSDKIRDLGSNTTGIETEKKLADLSNKISELERKISSLNTDDIMNLLKKLDDKC"
FT CDS 1543. .1896
FT /db_xref="UniProt/TrEMBL:Q88440"
FT /gene="ORF III"
FT /protein_id="CAA65974.1"
FT /translation="MGSVTQKTERIYDEMLKMEERFSRLEQEQQDHFSEKIDQASAILL
FT AEIRKIQSKLETCDCNKEILDALKAQDRTKNKGSGPSNLDALDLAHKDNSPKRNPIRGT
FT ENWHPQDLKLTKW"
FT CDS 1890. .3314
FT /db_xref="GOA:Q88441"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProt/TrEMBL:Q88441"
FT /gene="ORF IV"
FT /protein_id="CAA65969.1"
FT /translation="MVSRRERLEQLFDEDHPEMDIIIQYLSLLDHELDDCQEEKLQVLV
FT AKEMIDYSSSEDDEPTRNVKVNIKEEDEETYRPNRKRRGNSSSQPNYTRYDIPQEYIPN
FT RKTGLTNTKSLDLDCASNRRQLIEEWDNEMRLIIKTEKALTNDFDLILTLAKSKTVGNA
FT KQLLESLHTEAFKQASTTGEEFLTTLTNSFYTIFVGTNYLTQGTREKEKAVQEARNRLV
FT KLQICNLCSLESFFCDYETNLLKLPIEEWPKYIEEYIRKIPFVGMEVLEEYSKQDSITK
FT GSLGYAHNLIKAYMEKKCKSLKIKKEIRRNMCCPKFSSPETQYGCKPISHKKAKKQKYK
FT QYYKKKYRLRKPKRWTNSRRKYSGRKLFRRKRDQKEETSQQSPEEKKKFCPQGKTTCRC
FT WICNEIGHFAKDCRNKSANHNKIIEELQSLQLEPVFDLNELKIEEKFWELKEVSESSES
FT ESEISSDESSDSEDLE"
FT CDS 3406. .5532
FT /db_xref="GOA:Q88442"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="UniProt/TrEMBL:Q88442"
FT /gene="ORF V"
FT /protein_id="CAA65970.1"
FT /translation="MENNLQLLEELNHLEEGWEMLTDEDFKLQQNEDEEQLLESVDSEE
FT RFSTLTKTNPNSIYIRGNFYFKGYKKYSLDLYVDTGASMCTANKHVIPEEFWVNAKNPI
FT RARIANDSIMTFNKVAELMQVQIADETFIIPTLYQATTKGDITLGNNFCRLYEPFVQYK
FT DMITFHKDGRAVSTKKVTKAYFHGLPGFLESKKVGSSTSTPNPENITPVTINQDNISKI
FT FKGEEIGESEQLFSTISAYTEVEKLLDSICSEHPLDSRINKGKFEAQIALLDTNKIIKC
FT KPMQYSPQDREEFKTQIEELLKLGIIRPSKSPHSSPAFMVRNHAEIKRGKARMVINYKK
FT LNDHTKGDGYLLPNKEQLLQRIGGKTFYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHY
FT EWLVMPFGLKQAPAIFQRHMDESLSNMYPQFCAVYVDDIIVFSKTEEEHLGHVKIVLNR
FT CKALGIVLSKKKAQLCKTTINFLGLVIERGNLKVQSHIGLHLVAFPDQLSDRNALQRFL
FT GLLNYISAYFPKIANLRSPLQVKLKKEITWSWTEKDTETVRKIKSLVKTLPDLYNPSPE
FT DKPIIECDASDDHWGAILKAKLPEGKEVICRYASGTFKPAEKNYHSNEKEILSIIKAIK
FT AFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQSRLVRWQMALREYSFDIEHVSGQKN
FT VLADIMTRELAGKT"
FT CDS 5544. .7088
FT /db_xref="GOA:Q88443"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="UniProt/TrEMBL:Q88443"
FT /gene="ORF VI"
FT /protein_id="CAA65971.1"
FT /translation="MEQVALSYEESLLHQMNEVKLSIYDLEDQLSAKRYEFDLLERKLR
FT RHTSAVKSQQDNITGTLPREAVIIPEPRKLEVTQQLGEGQTQSTELSSRQQPEEGKPNN
FT SQSYTGIRPDQLFQSADNQTTKVESAPQVELRPQAPLSGSKTYVIYDGPNQGIYDSWAL
FT VAPIKQNYHHQAFSTRKEAELALQTYIVQKHQKKPIEQHQPKEQKAQFPESDYKKALAS
FT TKAAPNKNLVVLGRMFKQQPKITEKSKVFERPLVTKDHFIHNYLVAQTHDNCEEHKFFT
FT VDSKTLSLYGFIEGADPEYVREAFHCGLISLIYPGENLKEISLLPKDLYRAIKNYRTRV
FT CSAQSRPIYLRITSTFLEWENDDILIPYHWIEVGLSNGKIPWDKSYKKTATVEYLPEIT
FT ALRPKRIKAVYNQCTKIFADSKKKLNYADDKIILISNYSELIKEKELITLSEYEARFTS
FT GQLAITEKTARQWCLDAPEPHLCSRCEAARVVHKTHSEKASSTDTEKDNHSSSSNM"
XX
SQ Sequence 7876 BP; 2889 A; 1581 C; 1497 G; 1909 T; 0 other;
X97304 Length: 7876 May 10, 2005 10:10 Type: N Check: 1839 ..
1 tggtatcaga gcctagtact ctcaccagta cgggatccaa ctcatcatct
51 tcatcaacat ccaagcatgt ctgaagaaga aatcagaatg gaccaaccac
101 agggcggcca cgacgagtac atcttcgaag aagaaggtac gtatgcacat
151 gatgttgcaa tagattctac tcttttaaaa gagatagaaa agaaagatct
201 tgaacttact tctgaggaag tattcaagac tccaagcttg tggaagaaat
251 tcctcaaagc tcggaaaaac atatgcattt cttgtgtcag ttctagggaa
301 tatcccatag aaattgctca agcaaatgga cttactgaga ttcctttctt
351 caacagagaa gaaatcgaaa gtaagaaaag ggtgttaaaa cccgaagatc
401 gtaaaaagat agattttatt catataggat ctgttaaaat tatgatcaaa
451 agcaccttta ggacaggaat agactctcct attagtgtag cactccttga
501 ccggagaatg aaaaacgcta aagacgcagt cttcggcgga gttaaaggta
551 acctttccta cgggaaactt atctttacct acaacccaaa aatctctgtt
601 agtcttagag accctacgat taacaagact ttaacactag ctcatttctt
651 tgaaaaagaa gaattgatgc atgagggaaa tcatccctat actatatcct
701 acaaaatagg atacaccttg tcaaactctc accacagcct agagtttaga
751 ccaaaagaac ctatttgtat agatgacctt ttctctacag taggaaaaat
801 atctcaagca cccttgcaag agataactcc catagaaaac tattggagaa
851 tgagcctagg taacactagc agaagacttc taggagaaag acctagaatg
901 attgtcatag aggacgatga agaagagacc cctcttgaca gacatacaga
951 aagagcatta gctagatctc aatctaggat gctaggttta aggcccttag
1001 aagaccttag aaccaccagc cgcaagatta atacccttgc acatcagcta
1051 tagaagaatg agtttcagaa gagaacctca tatctactat aagaagcagt
1101 acctcactct caacactcaa aatgttgaaa gaggagagcc cgaatacctc
1151 tatgtaggag ggcgaggaat tgaaggatgt ttgaaacacc tcaataacat
1201 caatgttgta tgtggaaaca tacatatgat gaactactat atttgtaaga
1251 ctttaggaat aaagacttcc atctatagaa acactccaga agataatagt
1301 aacccaggat tactatccct tctaggaaaa cctcaagaga gttcattcca
1351 gaaccctcta gagaaaaaga tagacaatct tagcgataag attagagatc
1401 taggatctaa taccacaggt atagagactg aaaagaagtt agctgacctt
1451 agtaataaga ttagtgaact tgaaagaaaa atatcatctc ttaacacaga
1501 tgatataatg aatttactga agaaattaga tgacaaatgc taatgggttc
1551 agtaactcaa aagaccgaaa ggatctatga tgaaatgctc aaaatggaag
1601 agcgtttctc ccgcctagag caggaacaac aagatcattt ctcagaaaag
1651 atcgatcagg catctgctat ccttttagca gaaataagaa aaatacagtc
1701 aaaacttgaa acttgtgact gtaacaaaga aatccttgat gccttaaaag
1751 cacaggatag aactaaaaat aaaggatcag gaccttcaaa tcttgatgct
1801 ttagatttag cacataagga taactctccc aagagaaatc ctatccgagg
1851 aacagaaaac tggcatcctc aagatctcaa gctcaccaaa tggtaagcag
1901 aagagaaaga ctcgaacaac tgttcgacga agatcatcca gaaatggata
1951 ttattataca atatctgtct ttacttgatc atgaacttga tgattgtcag
2001 gaagagaagt tacaggtact tgtagcaaaa gagatgattg actacagcag
2051 cagcgaagac gacgagccaa ctcgaaacgt caaagtcaac atcaaggaag
2101 aagacgaaga aacctatcgt ccgaaccgaa agcgaagagg aaacagctcc
2151 tctcagccaa attacaccag gtatgatatt ccacaagaat acattcctaa
2201 cagaaaaaca ggtttgacca acaccaaaag cttggacctc gattgcgcca
2251 gcaaccgaag acaactcatt gaagaatggg acaatgaaat gagattaatc
2301 attaaaacag agaaagctct tactaatgat tttgatctaa tcttaactct
2351 tgcaaagagt aagactgttg gtaatgccaa acaattatta gaatctcttc
2401 atactgaagc ttttaaacaa gcctctacaa caggagaaga atttctaaca
2451 actctaacaa attcgtttta tactatattt gttggaacta actacttgac
2501 gcagggaact cgagaaaaag agaaagctgt tcaagaagct agaaacaggt
2551 tagtcaaatt acaaatttgc aatctctgtt cactagaaag ttttttctgt
2601 gactatgaaa ccaatcttct taaattacca atagaagaat ggcccaaata
2651 tattgaagaa tatattagga aaataccctt tgttgggatg gaagtactcg
2701 aagagtattc caaacaagac agcataacta aaggatcact tggatatgct
2751 cacaatctca tcaaagccta catggagaaa aagtgtaagt ctttgaagat
2801 caaaaaggaa atacgtagaa atatgtgttg tcctaagttc tcctcaccgg
2851 aaacacaata tgggtgcaaa cccattagcc ataaaaaagc taagaaacag
2901 aagtacaaac agtactataa aaagaagtat agacttagaa aacccaaaag
2951 gtggactaac tctagaagaa aatattctgg tagaaaactt tttcgcagga
3001 aaagagacca gaaggaagag acttcacagc agtctcccga agaaaagaag
3051 aagttctgcc cacaaggcaa aacaacatgc aggtgctgga tttgtaatga
3101 aatcggacac tttgcaaaag attgcaggaa caagtctgca aatcacaaca
3151 agataattga agaacttcaa agtcttcaat tagaacctgt ctttgacctc
3201 aacgagctca agatagaaga aaaattctgg gaacttaaag aagtctcaga
3251 aagctcagaa tctgaatcag agatcagctc agatgaatcc tcagactcag
3301 aagatctgga gtgaacttct agaaacagaa gaaggatgga atcttctctt
3351 acaagaagat tacagtccag aacttgacgc tgttgcagaa gccaagttac
3401 aagagatgga gaacaatctt cagctgctcg aagagctcaa tcaccttgaa
3451 gaaggatggg agatgcttac agacgaagac ttcaagcttc aacaaaatga
3501 agatgaagaa caacttcttg aatccgtcga ttcagaagaa cggtttagta
3551 ctctaaccaa gactaatcca aatagcattt atataagagg aaacttttat
3601 tttaaaggct ataaaaaata ttcacttgat ttgtatgttg acacaggtgc
3651 aagcatgtgt actgcaaaca agcatgtcat tccagaagaa ttctgggtga
3701 acgcaaaaaa tcctatcaga gctcgtatag ctaatgatag tattatgact
3751 tttaacaaag tcgctgagtt aatgcaggta caaattgcag atgaaacatt
3801 catcatacca accttgtatc aggcaacaac aaaaggagat attaccttag
3851 gtaataattt ctgtcgttta tatgaacctt tcgttcagta taaagacatg
3901 ataaccttcc acaaagacgg acgtgcagtc agtactaaga aggttacaaa
3951 agcatacttt catggacttc caggattcct tgaaagcaag aaagttggca
4001 gctcaacgtc aacaccaaac cctgaaaata tcaccccggt taccattaac
4051 caggataata tttccaaaat ttttaagggg gaggagattg gggaaagcga
4101 acaacttttc tcaactattt cagcatacac tgaagtagaa aaattactcg
4151 attcaatctg ttcagaacat cctctagaca gcagaatcaa caagggtaag
4201 tttgaggccc aaattgcatt attagacact aacaaaatta ttaagtgtaa
4251 accaatgcag tattcacctc aagaccgaga agagtttaaa actcagatcg
4301 aagaactact caagcttggt atcatcagac ctagcaagag tccacattcc
4351 tcaccagcct tcatggtaag gaatcatgcc gagatcaaac gaggcaaagc
4401 aagaatggta attaactata aaaagttaaa tgaccataca aagggagatg
4451 gctacctact tcctaacaag gagcaactgc ttcaaagaat cggaggtaag
4501 accttttact cttcctttga ctgtaaatct ggattttggc aggtacgcct
4551 tgctccagaa acaattcagc taaccgcttt cagctgtccc caaggacact
4601 acgaatggtt agtcatgcct tttggattaa aacaagcccc tgctattttc
4651 caaaggcaca tggacgaaag tctcagcaac atgtatccac agttttgtgc
4701 tgtatatgtt gatgacatca tcgtcttcag caaaactgaa gaagaacatt
4751 taggacatgt caaaattgtt ctaaacagat gcaaagccct aggaatagtg
4801 cttagcaaaa agaaagccca gttgtgcaaa acaactatca atttccttgg
4851 tctagtaata gaaagaggaa atctcaaagt ccagagtcat atcggactac
4901 acttagttgc ttttccagat caacttagtg ataggaatgc cttacaaaga
4951 tttttaggcc tcctaaatta tatctccgct tattttccaa aaatagcaaa
5001 ccttaggtca cctttacagg ttaaacttaa gaaagagata acttggtctt
5051 ggactgagaa agacacggaa actgtcagaa aaataaagag tctagtaaaa
5101 actttaccag acctttacaa tccttcacca gaggataagc ctatcatcga
5151 atgcgatgca tcagatgacc attggggagc aatcctcaaa gcaaaacttc
5201 cagaaggtaa agaggtaata tgcaggtatg cttcaggaac ctttaaacca
5251 gctgagaaga attaccatag taatgaaaag gaaatccttt ccattattaa
5301 ggcaatcaaa gcttttagag cttatatcct tccttataaa tttcttgtaa
5351 ggactgataa tactaatgct gcttattttg tgagaacaaa tattgcaggt
5401 gattataagc aaagccggct tgtgagatgg caaatggctt taagagaata
5451 ttcttttgat atagaacatg tttctggtca aaaaaatgtt ctagctgata
5501 tcatgactcg ggaacttgca ggaaaaacat aggagtcaga tccatggagc
5551 aagtagcctt gagctatgag gagtctctac tccatcagat gaatgaggta
5601 aaactctcaa tttatgatct tgaagatcaa ctctctgcaa agagatacga
5651 gttcgaccta ctcgagcgca agctacgaag gcatactagt gctgtaaaaa
5701 gccaacaaga taatattact ggaactcttc caagagaagc agttattatc
5751 cctgagccca ggaaactgga ggttactcag caacttggcg aaggtcaaac
5801 gcaatcgaca gaactaagtt ctcgtcaaca acctgaggag ggtaaaccta
5851 ataactctca gagttatact ggtattagac cagatcaact gtttcagtct
5901 gcagataatc agactaccaa agtggaatct gctccacaag tagagcttag
5951 accccaagct ccattatcag gatcgaaaac gtatgttata tacgatggtc
6001 caaatcaagg aatatatgat agttgggctc ttgtagcacc gataaaacaa
6051 aactatcatc accaggcctt ttccaccaga aaagaagccg aactggccct
6101 tcaaacatac attgttcaga agcaccagaa aaagcctatt gagcaacacc
6151 agcccaaaga gcaaaaagcc caattcccag aatcggacta caaaaaggcc
6201 cttgcttcaa ccaaggcagc cccaaacaag aatcttgttg tccttggacg
6251 catgtttaaa caacagccca agataacaga aaagtcaaag gtgttcgaaa
6301 gaccacttgt gactaaggat catttcatcc ataattatct ggtagcacag
6351 actcatgata actgcgagga acacaagttc tttacagtcg attcaaagac
6401 actttctctt tacggtttca ttgaaggagc cgacccagaa tatgtcagag
6451 aagcttttca ctgtgggtta atttcattaa tctatccagg tgaaaacctc
6501 aaggagatct ctcttctccc aaaagacctc tacagggcaa tcaaaaacta
6551 cagaaccaga gtttgtagtg cacagagtag accaatctac ctgagaatca
6601 cgagtacctt cctagagtgg gaaaatgatg acatccttat tccataccac
6651 tggattgagg taggactatc caatggaaaa attccatggg acaagtcata
6701 taagaagacc gcaacagtcg agtatcttcc agagataact gcactcagac
6751 ctaaaaggat aaaagcagta tataatcagt gtactaagat cttcgcagat
6801 tcaaagaaga agcttaacta tgctgatgac aagataattc taataagcaa
6851 ttattcagaa ttaatcaagg agaaagaatt aataactctt tcagaatatg
6901 aagcccgctt tacaagtggc cagctagcta tcactgaaaa gacagcaaga
6951 caatggtgtc tcgatgcacc agaaccacat ctttgcagca gatgtgaagc
7001 agccagagtg gtccacaaga cgcactcaga aaaggcatct tctaccgaca
7051 cagaaaaaga caaccacagc tcatcatcca acatgtagac tgtcgttatg
7101 cgtcggctga agataagact gaccccaggc cagcactaaa gaagaaataa
7151 tgcaagtggt cctagctcca ctttagcttt aataattatg tttcattatt
7201 attctctgct tttgctctct atataaagag cttgtatttt catttgaagg
7251 cagaggcgaa cacacacaca gaacctccct gcttacaaac catgtattgt
7301 agctaaacct cttaggagga tatcaataaa agccctaaca ggcctttgat
7351 tatatcttgg agtcattccc agatctattt ccctaaccag gaatctgaag
7401 acgcccagtc ctggagcgca caattgcctg tagtagcgtg aatcccgaga
7451 gtcaggagga cgttggtagc gaagatcggc atgcgttgga cagaagctga
7501 acagatgatc acagaggaag aggccgtaaa caagccataa tcaacaggta
7551 cctgagaagg taattattga tatcctacct atcaattaat ataaaaaata
7601 aaaaattttt caaagccatg agccatttca tgagcaaggt tgtagaaaac
7651 ctcaaataca tccactggga tgatgagaaa tctcttcagg agatagacat
7701 agaactgtta aaacaggtca acttcgagat ccaacaagat ctagaagaac
7751 aagatgaaga aaatcatcca acaattcaga tataccaagc catctgcaag
7801 gttatcaagc agttgaggct caaactcaac aagacttccg catccagcgc
7851 aactatccag agacgtcaaa aatttc