Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA, satellite RNA

ACC No: Y12833

Dated: 2008-10-23 | Length: 451 | CRC: -1079739257

                
ID   Y12833; SV 1; linear; genomic RNA; STD; VRL; 451 BP.
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AC   Y12833;
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DT   27-AUG-1997 (Rel. 52, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 6)
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DE   Cherry small circular viroid-like RNA, satellite RNA
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KW   direct repeat; satellite RNA; viroid.
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OS   Cherry small circular viroid-like RNA
OC   Viroids; unclassified viroids.
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RN   [1]
RX   PUBMED; 9261382.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "A 451-nucleotide circular RNA from cherry with hammerhead ribozymes in its
RT   strands of both polarities";
RL   J. Virol. 71(9):6603-6610(1997).
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RN   [2]
RP   1-451
RA   Flores R.;
RT   ;
RL   Submitted (30-APR-1997) to the EMBL/GenBank/DDBJ databases.
RL   R. Flores, Instituto de Biologia Molecular y Celular de Plantas,
RL   (UPV-CSIC), Universidad Politecnica de Valencia, Camino de Vera 14,
RL   Valencia, SPAIN
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DR   RFAM; RF00008; Hammerhead_3.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .451
FT                   /organism="Cherry small circular viroid-like RNA"
FT                   /mol_type="genomic RNA"
FT                   /note="from cherry trees, cultivar Imperiale, displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /db_xref="taxon:64021"
FT   repeat_region   <1. .>451
FT                   /note="putative"
FT   repeat_region   213. .232
FT                   /rpt_type=DIRECT
FT   repeat_region   266. .285
FT                   /rpt_type=DIRECT
FT   variation       435
FT                   /replace="g"
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SQ   Sequence 451 BP; 129 A; 89 C; 110 G; 123 T; 0 other;

y12833 Length: 451  23-OCT-2008  Type: N  Check: 9981  ..

       1  gtgggatgtg tgtctcacct gaagaggaca aaagtccgaa acggtattct
      51  tgtttctagc tgaagtttta agtcggaaga agtttcttcc tgactgagcc
     101  aatcacggtc aacaaaacct tgcttttcct gttttccatt gtgtacaggg
     151  gttatccttt tagagagata accacaggcg caggtcctga aatcgtgacg
     201  tggcatgaac attaagcgaa gaaaaggaga attcgcgatc tggacgtcaa
     251  tcatatgact agccataagc gaagaaaagg agaataacta tttcgttctt
     301  ttgaactcgt cagtagggac acacatcccc atatagcggt atcttcatac
     351  ttcagggcct gcgcctgggg ttacttacac aagaagtaac attccgtctt
     401  aaggaagacg ggaagcaaag gttttgttgg tatgagatgc cttatgctgt
     451  a