Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus-[Lucknow] partial DNA-A sequence
ACC No: Y16421
Dated: 2005-04-18 | Length: 2739 | CRC: -1469663220
!!NA_SEQUENCE 1.0
ID TLC16421 standard; genomic DNA; VRL; 2739 BP.
XX
AC Y16421;
XX
SV Y16421.1
XX
DT 18-AUG-1998 (Rel. 56, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Tomato leaf curl New Delhi virus-[Lucknow] partial DNA-A sequence
XX
KW coat protein; precoat protein; Rep protein 1; Rep protein 2; Rep protein 3.
XX
OS Tomato leaf curl New Delhi virus-[Lucknow]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RA Hallan V., Saxena S.;
RT ;
RL Unpublished.
XX
RN [2]
RP 1-2739
RA Hallan V.;
RT ;
RL Submitted (04-FEB-1998) to the EMBL/GenBank/DDBJ databases.
RL V. Hallan, Plant Virus Laboratory, National Botanical Research Institute,
RL Lucknow U.P., 226 001, Rana Pratap Marg, INDIA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /db_xref="taxon:223348"
FT /mol_type="genomic DNA"
FT /organism="Tomato leaf curl New Delhi virus-[Lucknow]"
FT /segment="DNA A"
FT CDS 287. .1057
FT /db_xref="GOA:O91269"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:O91269"
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAA76209.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSSVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPHDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKENALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS 127. .465
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:O91270"
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="CAA76210.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNARIEGSPTSQLRQPLWSSCSCPHCPRHKSKGLDKQADEQ
FT KTQNVQNV"
FT CDS 48. .434
FT /db_xref="UniProt/TrEMBL:O91271"
FT /gene="AV3"
FT /product="AV3 protein"
FT /protein_id="CAA76211.1"
FT /translation="MKIMLHGLFSAWVPINRLAHQVWIHKHVGSIVARISRKRSWSKVH
FT ASCKISPRDRKELLPRHSRLRSCPRSHSCSPSKELWRSDQQISSFQRPHRRFADVSTST
FT APMELVQLSPLPASQKQRPGQTGR"
FT CDS complement(1506. .>2593)
FT /codon_start=3
FT /db_xref="GOA:O91272"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:O91272"
FT /gene="AC1"
FT /product="Rep protein 1"
FT /protein_id="CAA76212.1"
FT /translation="MPPPSRFRINAKNYFLTYPKCSLTKEEALSQLLTLETPTSKKFIK
FT ICRELHEDGTPHIHVLIQFEGKFQCKNNRFFDLVVPSRSAHFHPNIQGAKSASDCKAYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDAMKVLKELAPKDYVLQFH
FT NLITNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWVTSNVVCAAARPFRPISVVIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPLYLKHFKVFMGAQRDC
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLNEEKNAALKQWVIKNAVFITLEEPL
FT YSGRENIAPPEEEEEHSQEAS"
FT CDS complement(1184. .1603)
FT /db_xref="GOA:O91273"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:O91273"
FT /gene="AC2"
FT /product="Rep protein 2"
FT /protein_id="CAA76213.1"
FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSIN
FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTIQPQP
FT AESPGASQVFSNFPNLDGLTPSDWDFLESLQNPGP"
FT CDS complement(1054. .1464)
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:O91274"
FT /gene="AC3"
FT /product="Rep protein 3"
FT /protein_id="CAA76214.1"
FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY"
XX
SQ Sequence 2739 BP; 759 A; 583 C; 606 G; 791 T; 0 other;
Y16421 Length: 2739 May 10, 2005 10:10 Type: N Check: 9302 ..
1 taatattacc gaatggcccg cgaaattttt aggtgggccc tgaacgaatg
51 aaaatcatgc tacatggcct atttagtgcg tgggtaccaa taaatagact
101 tgctcaccaa gtttggatcc acaaacatgt gggatccatt gttgcacgaa
151 tttccagaaa gcgttcatgg tctaaggtgc atgctagctg taaaatatct
201 ccaagagata gaaaagaact actccccaga cacagtcggc tacgatcttg
251 tccgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc
301 agcagatatc atcatttcaa cgcccgcatc gaaggttcgc cgacgtctca
351 acttcgacag cccctatgga gctcgtgcag ttgtccccat tgcccgcgtc
401 acaaaagcaa aggcctggac aaacaggccg atgaacagaa aacccagaat
451 gtacagaatg tatagaagtc ccgacgtgcc aaggggttgt gaaggacctt
501 gtaaggtgca atcatttgaa tccaggcacg atgtctctca tattggcaaa
551 gtcatgtgtg ttagtagtgt tacccgagga actggactca cacatcgcgt
601 ggggaagcga ttctgtgtga aatccgtcta tgtgctagga aagatatgga
651 tggatgaaaa catcaagaca aaaaaccata ctaacagtgt catgtttttt
701 ttagttcgtg accgtcgtcc tacaggagct ccccatgatt ttggggaagt
751 gtttaatatg tttgacaatg aaccgagcac agcaacggtg aagaacatgc
801 atcgtgatcg ttatcaagtg ttacggaagt ggcatgcgac tgtgacggga
851 ggaacatatg catctaagga gaacgcatta gttaggaagt ttgttagggt
901 taataattat gttgtttata atcaacaaga ggcaggcaag tatgagaatc
951 atactgaaaa cgcattaatg ttgtatatgg cctgtactca cgcatcaaat
1001 cctgtatatg ctactttgaa aatccggatc tatttctatg attcggtcac
1051 aaattaataa atatcaagct ttatatcata agacgtccat acatcaatcg
1101 tctgttccaa tacattatcc aatacatgat aaactgctct tattacatta
1151 tatattccta tgacacctaa catatccagg tacttaagga cctgggtttt
1201 gaagactctc aagaaaatcc caatctgagg gcgtaagccc gtccagattt
1251 ggaaagttag aaaacacttg tgaagcccca gggctttccg caggttgtgg
1301 ttgaattgta tttgaatctt gattatgtcg tgctgtgtta ggaagggcct
1351 gctgtcgtgt ttcaaaattt tgaaatacag gggatttcga atttcccagg
1401 tatatacgcc actctctgct cgatccgcag tgatgtattc ccctgtgcgt
1451 gaatccgtga tcatggcagt tgatcgatac gtaatacgaa caaccacacg
1501 gaagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgggggagc
1551 gatgttttcg cgaccggaat agagtggttc ttcgagtgtg atgaagactg
1601 cattcttgat tacccactgc ttcagtgctg cattcttctc ttcgttcaga
1651 tattccttat agctgctgtt cggaccttta ttgcacagga agatagtggg
1701 aattccacct ttaatcatga ccggctttcc gtacttcgtg ttgctttggc
1751 agtcacgctg ggcccccatg aatactttaa agtgctttag atagagggga
1801 tcaacgtcat caatgacgtt gtaccaagca tcattgctat acacctttgg
1851 gctcagatct agatgtccac acaagtaatt gtgtggtcct aagcaacgag
1901 cccacattgt tttgcccgtc ctactatccc cctctatgac tacacttatt
1951 ggtctaaaag gccgcgcagc ggcacacaca acattcgacg tcacccaatc
2001 gacgagttct ggcggaactc tgtcgaagga agaaattgaa aatggagaaa
2051 cataaacctc agaacgaggt tgaaaaatgc gatctaaatt tgtaattaaa
2101 ttgtgaaact gcagaacata atcctttggt gcaagttctt ttaatacttt
2151 catcgcatct tctttatttc ctgtgttaat cgcctgagca tatgcatcgt
2201 ttgctgtttg ctgaccacca cgagcagatc gtccatcgat ctggaaaaca
2251 ccccattcta gaacgtctcc gtctttgtcg atgtatgctt tgcagtccga
2301 tgctgattta gctccctgaa tgttcggatg gaaatgtgct gaccgacttg
2351 ggacaaccaa gtcgaagaat ctgttatttt tgcattggaa ttttccttcg
2401 aattggatga gaacatggat atgcggagtc ccatcttcgt gaagctctcg
2451 acagatcttg atgaatttct tcgaagttgg ggtttctagg gttagtaatt
2501 gggaaagtgc ctcttccttt gtaagagagc actttggata cgtgaggaaa
2551 tagttttttg catttattct aaaacgactt ggcggaggca taaaacttgt
2601 cgtttcgatc cggtgtctct caacttttct atgtaattgg tgtctggagt
2651 cccatatata ggtaagacac catatggcag aattgtaatt ttgaaaagaa
2701 aattacttta attcaaaatc cctaaagcgg ccattcgta