Sequence of DPV Thogoto virus

Thogoto virus genomic RNA for PB2 polymerase subunit

ACC No: Y17873

Dated: 2003-03-26 | Length: 2375 | CRC: -352147832

                !!NA_SEQUENCE 1.0
ID   TVI17873   standard; genomic RNA; VRL; 2375 BP.
XX
AC   Y17873;
XX
SV   Y17873.1
XX
DT   07-JAN-1999 (Rel. 58, Created)
DT   26-MAR-2003 (Rel. 75, Last updated, Version 3)
XX
DE   Thogoto virus genomic RNA for PB2 polymerase subunit
XX
KW   PB2 polymerase.
XX
OS   Thogoto virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Thogotovirus.
XX
RN   [1]
RX   MEDLINE; 99415693.
RX   PUBMED; 10486113.
RA   Weber F., Gruber S., Haller O., Kochs G.;
RT   "PB2 polymerase subunit of Thogoto-Orthomyxovirus";
RL   Arch. Virol. 144(8):1601-1609(1999).
XX
RN   [2]
RP   1-2375
RA   Weber F.;
RT   ;
RL   Submitted (05-AUG-1998) to the EMBL/GenBank/DDBJ databases.
RL   F. Weber, Institute of Med. Microbiology and Hygiene, Department of
RL   Virology, Hermann-Herder-Str. 11, D-79008 Freiburg, FRG
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2375
FT                   /db_xref="taxon:11569"
FT                   /mol_type="genomic RNA"
FT                   /organism="Thogoto virus"
FT                   /strain="SiAr 126"
FT                   /clone_lib="pGEM-7"
FT                   /segment="1"
FT   CDS             15. .2324
FT                   /db_xref="GOA:Q9YNA4"
FT                   /db_xref="UniProt/Swiss-Prot:Q9YNA4"
FT                   /product="PB2 polymerase subunit"
FT                   /protein_id="CAA76908.1"
FT                   /translation="MDREEPAESECTLRALVEEYNGACKEAPKEMSKQFTDYNTFKRYT
FT                   TSKKDHAPQMRLVYSVRKPWPISMTPSKEIPLVFNGTKLKDTILDLGESKRTRANIVVP
FT                   DYWSKYGSQTSLEVVNAILYAEDLKVQRFFSTEWGEIRYGRMLPFRKPVQACPTIEEVN
FT                   PASIPHTLLQVFCPQYTTLDSKRKAHMGAVEKLKRVMEPICKVQTQESAVHIARSLIDS
FT                   NKKWLPTVVDHTPRTAEMAHFLCSKYHYVHTNTQDLSDTRSIDNLCGELVKRSLKCRCP
FT                   KETLVANLDKITIQGRPMREVLADHDGELPYLGICRVAMGLSTHHTMKIRSTKFSILNS
FT                   DHPRIEVKKVFSLSPDVQVTIPYRRFKGKAKVYFQNDQIQGYFSCTDRQIDEIKISAPK
FT                   NAPLLEPLLDICYYGSFIEPGFEQTFGFYPAGKREFVDSFFMHHSKDHKAFLIHMGLDK
FT                   DLSLPLSPELNWKEPALSKVCRVTELDSTVQPYTSATREFVLGETLNVYTQHENGLELL
FT                   ICPTEIRSTRGPLPPGTNLSGSEFIDIYQDPFSRAKSLLKSTILHAERCKEFVGNMLEE
FT                   YQDPAETTVQSLVPINTWGKSAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGSIQDR
FT                   DKKQTNVPRAFMLRGSQIEYDMKATRGLVVDTTNRIIVGGETVLREGKGGPEGYVQTGV
FT                   FEEQPRCYLVDTPDHGLSMGLSRFCVHSQGRYFQYEKKISIWEETDNIKATIDSQRDLK
FT                   RRRDIEEMVSKRARIV"
FT   polyA_signal    2345. .2350
XX
SQ   Sequence 2375 BP; 761 A; 571 C; 580 G; 463 T; 0 other;

  Y17873  Length: 2375  June 22, 2004 14:38  Type: N  Check: 1554  ..

       1  agcaaaaaca agcgatggac agagaagaac ccgcggaatc agagtgcacc
      51  ttaagagctc ttgtagaaga gtacaatgga gcatgcaagg aagcaccgaa
     101  agagatgtcg aagcaattca cagactacaa cacattcaaa aggtatacca
     151  caagcaagaa ggatcatgca ccccagatga gactagtgta ttcagtgaga
     201  aaaccatggc caatcagcat gactcccagc aaggagatcc ctctggtgtt
     251  caacgggacc aaactaaaag atactatcct ggacctagga gaatccaaga
     301  gaaccagggc aaacatagta gtaccagatt actggtccaa gtacggaagc
     351  cagaccagcc tagaagtagt taacgccatt ctatatgcgg aagacttgaa
     401  agtacagaga tttttcagca cagaatgggg tgagatccgc tacggaagaa
     451  tgctcccctt cagaaagcct gtacaggcat gtcccactat agaggaggta
     501  aatccggctt ctataccaca tactctgctg caagtgttct gcccccaata
     551  caccactcta gacagcaaga ggaaagcaca catgggagca gtagagaagc
     601  tgaaaagagt catggaaccc atttgtaagg tgcagacaca agaatctgca
     651  gtacacattg ccagatctct tattgacagc aacaaaaagt ggctgcccac
     701  cgttgtagac cacaccccca ggactgctga gatggcacat ttcttgtgca
     751  gcaaatatca ctatgtgcat accaacacac aagatctaag cgacacgcgc
     801  tccatagaca atctatgcgg agaacttgtg aagagatctc tgaagtgcag
     851  atgcccaaag gagactctgg tcgccaacct agacaagatc accatacaag
     901  ggagaccgat gagggaagtg cttgctgacc acgatgggga gctcccctac
     951  ctgggaatat gccgagtggc tatgggtctc agtacacacc acacaatgaa
    1001  gattaggagc accaagttct ctatccttaa cagtgaccac cctcgcattg
    1051  aggtgaaaaa ggtcttctca ttgagcccgg atgtgcaagt gaccatacct
    1101  tataggagat tcaaagggaa agcgaaggtc tatttccaaa acgaccagat
    1151  tcaaggatat ttcagctgca cagacaggca gatagatgag atcaagatta
    1201  gtgcccccaa gaacgcaccc ctactagaac ccctacttga catctgctac
    1251  tatggatcct tcatagaacc gggctttgaa cagaccttcg gattttaccc
    1301  agccggaaag agagaatttg tggacagttt cttcatgcat cactccaaag
    1351  accacaaggc cttcttgatc cacatgggcc ttgacaagga tctgagcctc
    1401  cctctgtcac cagaactcaa ttggaaagag ccagctctta gcaaagtctg
    1451  ccgtgtgaca gagctagaca gcaccgtaca gccgtacacc tctgccacta
    1501  gagagtttgt gctgggagaa acgctcaatg tatacaccca acatgagaat
    1551  ggacttgaac tgctcatatg ccccacagag ataaggagta cgagaggtcc
    1601  tcttcctcca ggaaccaacc tgagcggcag tgaattcata gatatatacc
    1651  aagacccttt cagcagagcc aaaagcctgc tgaagtccac catactgcac
    1701  gcagagagat gcaaagagtt cgttggcaac atgctcgaag agtaccaaga
    1751  ccctgcagag acgaccgtgc aaagtctagt gcccattaac acttggggga
    1801  aaagtgccaa gagaaagcta caagaggaaa tcaccagcga tccagactgg
    1851  caccagtgtc caagaaagcg agcaaagatg tcttaccttg ctataatagc
    1901  aggtagtatc caagacagag acaagaagca aacaaatgtt cctcgggctt
    1951  tcatgcttag gggatcgcaa atagagtacg acatgaaagc caccagaggg
    2001  cttgtggtgg acaccaccaa taggatcata gtagggggtg aaacagtcct
    2051  gagagagggc aaaggagggc ccgaagggta tgtccaaaca ggggtgtttg
    2101  aggagcaacc caggtgctac ctagtagaca ctccagacca cggattgtcg
    2151  atgggcctct ccagattctg tgtacactct caaggtcggt actttcaata
    2201  cgagaagaag atctctatat gggaggagac cgacaacatc aaagcgacta
    2251  tcgactccca gagggacctg aagagaagga gggatataga ggagatggtc
    2301  agcaagaggg caaggattgt gtagtcgcag aacgggagta cagctttttt
    2351  cttgaaaaat cgccttgatt tctct