The amino acids around the cleavage site (4 before and 1 after) are shown followed by the number of accessions with this sequence.
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| Species | Acronym | P1/ HC-Pro |
HC-Pro/ P3 |
P3/ 6K1 |
6K1/ CI |
CI/ 6K2 |
6K2/ VPg |
VPg/ NIa-Pro |
NIa-Pro/ NIb |
NIb/ CP |
|||||||||
| BRAMBYVIRUS | |||||||||||||||||||
| Blackberry virus Y | BlVY | YLQY/S | 1 | YRVG/G | 1 | IQFQ/S | 1 | IIFQ/A | 1 | IDFQ/S | 1 | ITFE/A | 1 | IVPE/G | 1 | ITFQ/N | 1 | IDFQ/S | 1 |
| BYMOVIRUS | |||||||||||||||||||
| Barley mild mosaic virus | BaMMV | PILQ/A | 9 | TILQ/S | 9 | VELQ/S | 9 | ITIE/G | 10 | ATLE/G | 10 | RNLQ/S | 1 | TYLQ/S | 3 | ||||
| RNMQ/S | 9 | TFLQ/A | 10 | ||||||||||||||||
| Barley yellow mosaic virus | BaYMV | IVLQ/A | 16 | YGLQ/A | 16 | IGLQ/A | 7 | IGLE/G | 23 | ITLE/A | 22 | IHMQ/A | 16 | IWLQ/A | 17 | ||||
| IELQ/A | 9 | IRFE/A | 1 | ||||||||||||||||
| ISFG/A | 1 | ||||||||||||||||||
| Oat mosaic virus | OMV | ISLQ/A | 1 | YGLQ/A | 1 | IELQ/A | 1 | VELE/G | 1 | VVLE/A | 1 | IKEQ/A | 1 | IVLQ/A | 5 | ||||
| Rice necrosis mosaic virus | RNMV | TYLQ/A | 1 | ||||||||||||||||
| Wheat spindle streak mosaic virus | WSSMV | VELQ/A | 1 | VELE/G | 1 | IVLE/A | 1 | IQTQ/G | 1 | IELQ/A | 6 | ||||||||
| Wheat yellow mosaic virus | WYMV | IALQ/A | 6 | YGLQ/A | 6 | IELQ/S | 6 | IDLE/G | 7 | VMLE/A | 7 | IQNQ/A | 5 | IELQ/A | 22 | ||||
| IALQ/G | 1 | HGLQ/A | 1 | GELQ/S | 1 | IQTQ/A | 3 | ||||||||||||
| IETQ/A | 1 | ||||||||||||||||||
| IPOMOVIRUS | |||||||||||||||||||
| Cassava brown streak virus | CBSV | IDLY/S | 13 | note1 | VEVQ/G | 16 | IERQ/D | 3 | LESQ/C | 8 | VEKQ/A | 10 | VEVQ/V | 8 | ITVQ/A | 7 | IDVQ/A2 | 31 | |
| IEMY/S | 2 | note1 | IEVQ/G | 1 | IERQ/S | 3 | LEAQ/C | 4 | VERQ/A | 1 | VEKQ/V | 1 | ITVQ/V | 4 | IEVQ/A2 | 2 | |||
| IELY/S | 2 | note1 | IEKQ/D | 5 | VGRQ/A | 1 | IEKQ/V | 1 | ITVQ/E | 1 | IDIQ/A2 | 1 | |||||||
| note1 | IERQ/N | 1 | VEMQ/V | 2 | IDAQ/A2 | 2 | |||||||||||||
| 1, there is no HC-Pro in CBSV | |||||||||||||||||||
| 2, this is for the HAM1/CP site; there is an additional NIb/HAM1 site: VDTQ/T (14 sequences), VDTQ/I (1 sequence), IDVQ/A (8 sequences) and IDLQ/V (11 sequences) | |||||||||||||||||||
| Cucumber vein yellowing virus | CVYV | IRNY/T1 | 2 | IDFY/C2 | 1 | VEIQ/G | 2 | IELQ/G | 1 | LESQ/G | 2 | VEIQ/G | 2 | VEVQ/V | 2 | VHLQ/V | 2 | VELQ/A | 4 |
| IDFY/S2 | 1 | IELQ/S | 1 | ||||||||||||||||
| 1, P1a/P1b; 2, P1b/P3 | |||||||||||||||||||
| Squash vein yellowing virus | SqVYV | IDEY/S1 | 2 | IDLY/S2 | 2 | IELQ/G | 2 | VELQ/S | 2 | LESQ/S | 2 | IELQ/G | 2 | IELQ/V | 2 | IEVQ/G | 2 | IELQ/A | 44 |
| 1, P1a/P1b; 2, P1b/P3 | |||||||||||||||||||
| Sweet potato mild mottle virus | SPMMV | IQFY/A | 14 | YKVG/G | 14 | VEQH/G | 14 | IESH/A | 14 | LESQ/S | 1 | IEQH/G | 1 | VDSH/V | 1 | VESH/G | 1 | VEPH/A | 29 |
| MQFY/A | 1 | ||||||||||||||||||
| MACLURAVIRUS | |||||||||||||||||||
| Alpinia mosaic virus | AlpMV | QHFQ/M | 1 | ||||||||||||||||
| Cardamom mosaic virus | CdMV | MQLQ/M | 1 | EILE/M | 1 | QTLE/I | 1 | RKIQ/G | 1 | QQFQ/M | 6 | ||||||||
| Chinese yam necrotic mosaic virus | ChYNMV | YFVG/A | 1 | TELQ/A | 1 | QELQ/M | 1 | LQAE/G | 1 | KVLE/M | 1 | VNLE/M | 1 | VGLQ/M | 1 | ISLQ/M | 2 | ||
| Maclura mosaic virus | MacMV | QVLQ/M | 1 | ||||||||||||||||
| Ranunculus latent virus | LELQ/M | 1 | LDNK/W | 1 | QHLE/V | 2 | LTRS/A | 5 | QELQ/M | 2 | |||||||||
| Narcissus latent virus | NLV | LELQ/M | 26 | ||||||||||||||||
| Yam chlorotic necrotic mosaic virus | INLQ/M | 3 | |||||||||||||||||
| IDLQ/M | 1 | ||||||||||||||||||
| Large cardamom chirke virus | QQFQ/M | 1 | |||||||||||||||||
| RYMOVIRUS | |||||||||||||||||||
| Agropyron mosaic virus | AgMV | IQHF/S | 1 | YNVG/G | 1 | VEHQ/A | 1 | VYHQ/S | 1 | VEHQ/S | 1 | VTFE/G | 1 | VAHE/S | 1 | VEHQ/H | 1 | VYHE/A | 3 |
| Hordeum mosaic virus | HoMV | IEHF/S | 1 | YNVG/G | 1 | VKHQ/A | 1 | VYHQ/S | 1 | VEHQ/S | 1 | VSFE/G | 1 | VGHE/S | 1 | VEHQ/H | 1 | VFHE/A | 2 |
| Ryegrass mosaic virus | RGMV | IKHY/S | 2 | YNVG/G | 2 | VTHQ/A | 2 | VTHQ/S | 2 | VHHQ/S | 2 | VHLE/G | 2 | VQHE/S | 2 | VSHQ/S | 2 | VVHE/A | 12 |
| TRITIMOVIRUS | |||||||||||||||||||
| Brome streak mosaic virus | BrSMV | IEYY/S | 1 | YEIG/G | 1 | VVFQ/S | 1 | SIYQ/S | 1 | VMYQ/K | 1 | AKFE/G | 1 | AVFE/S | 1 | VGFQ/N | 2 | CKFE/S | 3 |
| Oat necrotic mottle virus | ONMV | LRWY/S | 1 | YKIG/G | 1 | VEYQ/S | 1 | CEYQ/S | 1 | VSYQ/A | 1 | VKYE/G | 1 | SLYE/G | 1 | VNWQ/S | 1 | CVYE/S | 3 |
| Wheat Eqlid mosaic virus | WEqMV | IQLY/G | 1 | YKIG/G | 1 | VEYQ/A | 1 | CEFQ/A | 1 | VMYQ/S | 1 | VRYE/G | 1 | AQFE/S | 1 | VQWQ/S | 1 | CEWE/S | 1 |
| Wheat streak mosaic virus | WSMV | LRWY/C | 1 | YKIG/G | 15 | VEYQ/G | 15 | CEYQ/S | 15 | VSYQ/A | 15 | VKFE/G | 15 | STFE/G | 14 | VSWQ/S | 15 | CVYE/S | 84 |
| LRWY/G | 12 | SLFE/G | 1 | ||||||||||||||||
| FRWY/G | 2 | ||||||||||||||||||
| Yellow oat-grass mosaic virus | CVFE/A | 1 | |||||||||||||||||
| POACEVIRUS | |||||||||||||||||||
| Sugarcane streak mosaic virus | SCSMV | IVFY/T | 1 | YRIG/G | 7 | LIHH/A | 3 | LVFH/A | 25 | LIYH/G | 26 | LIMH/A | 25 | IVMH/A | 24 | LIFH/G | 4 | LIYH/A | 42 |
| LVFY/T | 26 | LVHH/A | 22 | LIMR/A | 1 | LVFH/G | 19 | LVFH/A | 8 | ||||||||||
| LVLY/T | 1 | LVFH/S | 1 | LVYH/A | 1 | ||||||||||||||
| Triticum mosaic virus | TriMV | LTYY/S | 2 | YRIG/G | 2 | YVLH/A | 2 | FVFH/A | 2 | LVFH/G | 2 | YVMH/G | 2 | YVPH/S | 2 | FIFH/N | 2 | FVFH/S | 2 |
| Caladenia virus A | LVFY/S | 3 | FRIG/G | 3 | VVYQ/G | 3 | ITYQ/A | 3 | ITYQ/G | 3 | IEYE/A | 3 | IEYQ/G | 3 | FLYQ/G | 3 | IEYQ/S | 3 | |
| UNASSIGNED POTYVIRIDAE | |||||||||||||||||||
| Spartina mottle virus | SpMoV | LHLQ/A | 1 | ||||||||||||||||
| FQLQ/A | 1 | ||||||||||||||||||
| Bermuda grass mosaic virus | LQLQ/A | 2 | |||||||||||||||||
| LELQ/A | 1 | ||||||||||||||||||
| Tomato mild mottle virus | TMMoV | VEFY/A | 1 | YSIG/G | 1 | LETH/S | 1 | IQHG/S | 1 | LEAH/S | 1 | LELH/G | 1 | LEEH/S | 1 | IEVH/S | 1 | FEEH/S | 3 |
| Rose yellow mosaic virus | RoYMV | MEFY/S | 1 | YQVG/G | 1 | NIDM/S | 1 | VASM/S | 1 | VLFE/G | 1 | VEFE/A | 1 | VDFE/Q | 1 | MIHQ/G | 1 | VYFQ/M | 1 |
| Eggplant mild leaf mottle virus | EMLMV | IEFY/A | 1 | YSIG/G | 1 | LETH/S | 1 | VQHG/S | 1 | LEAH/S | 1 | LELH/G | 1 | LEEH/S | 1 | IEVH/S | 1 | LEEH/S | 1 |
| Soybean leaf rugose mosaic virus | FRLQ/S | 1 | |||||||||||||||||
| POTYVIRUS | |||||||||||||||||||
| Maize dwarf mosaic virus | MDMV | IEHY/A | 91 | YAVG/G | 8 | VIHE/G | 8 | VTHQ/S | 7 | VIHQ/G | 7 | VKHE/A | 7 | VEHE/A | 8 | VTEQ/G | 8 | VKHQ/A | 83 |
| IDHY/A | 21 | VVHQ/S | 1 | VFHQ/G | 1 | VKFE/G | 1 | VRHQ/A | 2 | ||||||||||
| IEHY/T | 1 | ||||||||||||||||||
| VEHY/A | 7 | ||||||||||||||||||
| Sorghum mosaic virus | SrMV | IDHF/S | 2 | YVVG/G | 3 | VIHE/A | 3 | VTHQ/S | 2 | VIHQ/G | 3 | VCHQ/G | 3 | VEHE/S | 2 | VTEQ/G | 3 | VFHQ/A | 25 |
| ITHF/S | 1 | VAHQ/S | 1 | VEHE/A | 1 | VRHQ/A | 16 | ||||||||||||
| VYHQ/A | 1 | ||||||||||||||||||
| Sugarcane mosaic virus | SCMV | IEHY/A | 17 | YIVG/G | 15 | VIHE/G | 18 | VTQQ/S | 10 | VIHQ/G | 19 | VSHQ/G | 17 | VAHE/S | 18 | VEEQ/C | 32 | VFHQ/S | 58 |
| IDHY/A | 1 | YLVG/G | 3 | VVQQ/S | 5 | VAHQ/G | 1 | VEEQ/R | 1 | VFHQ/A | 69 | ||||||||
| VAQQ/S | 2 | VLHQ/G | 1 | VIHQ/S | 20 | ||||||||||||||
| VVHQ/A | 9 | ||||||||||||||||||
| VYHQ/A | 1 | ||||||||||||||||||
| Johnsongrass mosaic virus | JGMV | ICHY/S | 1 | YIVG/G | 1 | VEHE/R | 1 | VKHE/G | 1 | VIHE/N | 1 | VEHE/G | 1 | VEHE/G | 1 | ISNE/S | 1 | VEHQ/S | 5 |
| VKHQ/S | 1 | ||||||||||||||||||
Zea mosaic virus (=Iranian Johnsongrass mosaic virus) |
ZeMV | ITHY/N | 1 | YVVG/G | 1 | VIHE/N | 1 | VIHQ/S | 1 | VIHQ/S | 1 | VIHQ/G | 1 | VLHE/A | 1 | VSEQ/C | 1 | VVHQ/S | 1 |
| VIHQ/S | 2 | ||||||||||||||||||
| Pennisetum mosaic virus | PenMV | INHY/A | 1 | YIVG/G | 2 | VIHE/H | 2 | VVHQ/S | 2 | VIHQ/G | 2 | VTHQ/G | 2 | VTHE/A | 2 | VQEQ/G | 1 | VYHQ/S | 11 |
| IDHY/A | 1 | VMEQ/G | 1 | ||||||||||||||||
| Canna yellow streak virus | CYSV | IDHY/A | 1 | YVVG/G | 1 | VEHQ/K | 1 | VEHQ/G | 1 | VIHE/T | 1 | VEHQ/A | 1 | VEHE/G | 1 | ENMH/N | 1 | VEHQ/A | 3 |
| Cocksfoot streak virus | CSV | MVEY/S | 2 | YQVG/G | 2 | VKHQ/A | 2 | VHHQ/M | 2 | VQHQ/T | 2 | VHHQ/G | 2 | VDHE/T | 2 | VSMQ/S | 2 | VSHQ/A | 2 |
| Bermuda grass southern mosaic virus | VKHQ/A | 8 | |||||||||||||||||
| Delphinium vein clearing virus | VYHQ/G | 1 | |||||||||||||||||
| East Asian passiflora virus | EAPV | VVHY/S | 9 | YKVG/G | 9 | VSCQ/A | 9 | VKIQ/S | 9 | VQLQ/S | 10 | VSTQ/G | 9 | VELE/S | 10 | VQSQ/R | 1 | VSLQ/T | 13 |
| VQHY/S | 1 | YRVG/G | 1 | VTCQ/A | 1 | VKVQ/S | 1 | VTVQ/G | 1 | VIVQ/S | 1 | VSLQ/S | 3 | ||||||
| VVVQ/S | 8 | ||||||||||||||||||
| Bean common mosaic necrosis virus | BCMNV | IEHY/T | 7 | YRVG/G | 7 | VDTQ/A | 6 | VRPQ/S | 7 | VRLQ/G | 7 | VSTQ/G | 7 | VELE/S | 7 | VSVQ/S | 8 | VSTQ/S | 12 |
| GDTQ/A | 1 | VSLQ/S | 4 | ||||||||||||||||
| Soybean mosaic virus | SMV | IQHY/S | 57 | YRVG/G | 61 | VSAQ/A | 52 | VKVQ/S | 58 | VQLQ/S | 64 | VSTQ/G | 60 | VEME/S | 61 | VTVQ/G | 62 | VSLQ/S | 111 |
| IVQF/S | 1 | CRVG/G | 3 | VSAQ/V | 21 | VRAQ/S | 3 | VPTQ/G | 1 | VEIE/S | 2 | VAVQ/S | 2 | VALQ/S | 1 | ||||
| IIQF/S | 2 | VSVQ/V | 1 | VTTQ/G | 3 | ||||||||||||||
| VQHY/S | 2 | VSVQ/T | 1 | ||||||||||||||||
| VSVQ/A | 2 | ||||||||||||||||||
| Calla lily latent virus | IVQF/S | 3 | YRVG/G | 3 | VSVQ/V | 3 | VKVQ/S | 3 | FLMQ/C | 2 | VTTQ/G | 2 | VEME/S | 3 | VAVQ/S | 3 | VSLQ/S | 3 | |
| VQLQ/S | 1 | SRKE/R | 1 | ||||||||||||||||
| Watermelon mosaic virus | WMV | IQHY/S | 31 | YRVG/G | 31 | VSAQ/A | 26 | VKVQ/S | 29 | VQLQ/S | 31 | VTTQ/G | 31 | VEVE/S | 30 | VAVQ/S | 32 | VSLQ/S | 249 |
| VFAQ/A | 4 | VKVQ/G | 1 | VEVE/I | 1 | VYLQ/S | 1 | ||||||||||||
| VYAQ/A | 1 | VTVQ/S | 1 | ASLQ/S | 1 | ||||||||||||||
| VSLR/S | 1 | ||||||||||||||||||
| Fritillary virus Y | FVY | IHHY/S | 1 | YRVG/G | 1 | ESTQ/S | 1 | VMIQ/S | 1 | VQLQ/S | 1 | VTTQ/G | 1 | VDLE/S | 1 | VAVQ/S | 1 | VSLQ/S | 1 |
| Wisteria vein mosaic virus | WVMV | IQHY/S | 1 | YRVG/G | 1 | VSMQ/A | 1 | VKAQ/S | 1 | VQLQ/S | 1 | VSTQ/G | 1 | VEVE/S | 1 | VSVQ/S | 1 | VSLQ/S | 5 |
| Bean common mosaic virus | BCMV | IHHY/S | 13 | YRVG/G | 14 | VSVQ/A | 13 | VQMQ/S | 4 | VRLQ/G | 7 | VTTQ/G | 10 | VAVE/S | 10 | VATQ/S | 9 | VHLQ/S | 177 |
| VQIQ/S | 8 | VRLQ/S | 6 | VATQ/G | 3 | VDIE/S | 2 | VETQ/S | 3 | ||||||||||
| VQVQ/S | 1 | VTTE/S | 1 | VKTQ/S | 1 | ||||||||||||||
| VATQ/N | 1 | ||||||||||||||||||
| LATQ/I | 1 | ||||||||||||||||||
| Yambean mosaic virus | YBMV | VHYY/S | 1 | YRVG/G | 1 | VATQ/A | 1 | VRVQ/S | 1 | VRLQ/S | 1 | VVTQ/G | 1 | VAVE/S | 1 | VKIQ/S | 1 | VHLQ/S | 2 |
| VKTQ/S | 1 | ||||||||||||||||||
| Telosma mosaic virus | VHHY/S | 1 | YRVG/G | 1 | VTTQ/G | 1 | VRAQ/S | 1 | VRLQ/S | 1 | VSTQ/G | 1 | VTTE/S | 1 | VKTQ/S | 1 | VSLQ/S | 1 | |
| Cowpea aphid-borne mosaic virus | CABMV | VQHY/S | 3 | YKVG/G | 3 | GRHQ/A | 1 | VRVQ/G | 1 | VCLQ/S | 3 | VTTQ/G | 3 | VGVE/S | 3 | GCTQ/S | 1 | VVLQ/S | 31 |
| VETQ/A | 2 | VRMQ/S | 2 | VATQ/S | 2 | VMLQ/S | 5 | ||||||||||||
| VRIQ/S | 3 | ||||||||||||||||||
| Zucchini yellow mosaic virus | ZYMV | VDHY/S | 44 | YRVG/G | 39 | VATQ/A | 14 | VRLQ/G | 36 | VVLQ/S | 45 | VRVE/S | 47 | VELE/S | 45 | VETQ/S | 46 | VMLQ/S | 420 |
| VDHS/S | 1 | VTPQ/A | 1 | VRFQ/G | 1 | VMLQ/S | 2 | VILQ/S | 5 | ||||||||||
| VEHY/S | 1 | VSTQ/A | 22 | VKLQ/S | 3 | ||||||||||||||
| VLFY/S | 1 | VTAQ/A | 1 | VTLQ/S | 11 | ||||||||||||||
| VVLQ/S | 17 | ||||||||||||||||||
| Ceratobium mosaic virus | CerMV | VSLQ/S | 5 | ||||||||||||||||
| Melon vein-banding virus | MVBMV | VSLQ/S | 1 | ||||||||||||||||
| Ammi majus latent virus | AmMLV | VSLQ/S | 1 | ||||||||||||||||
| Donkey orchid virus A | DOVA | MKHY/S | 1 | YRVG/G | 1 | VSFQ/A | 1 | VTHQ/S | 1 | VLHE/S | 1 | VHHQ/G | 1 | VKEE/S | 1 | VQEQ/G | 1 | VEHQ/S | 1 |
| Florida passionflower potyvirus | VSLQ/S | 3 | |||||||||||||||||
| Clitoria virus Y | ClVY | VSLQ/F | 1 | ||||||||||||||||
| Diuris virus Y | DiVY | VSLQ/S | 1 | ||||||||||||||||
| Sirato 1 virus Y | VSLQ/S | 1 | |||||||||||||||||
| Sirato 2 virus Y | VSLQ/S | 1 | |||||||||||||||||
| Kennedya virus Y | KVY | VSPQ/S | 1 | ||||||||||||||||
| Eustrephus virus Y | VRMQ/S | 1 | |||||||||||||||||
| Cucurbit virus Y | VVLQ/S | 1 | |||||||||||||||||
| Hibbertia virus Y | HiVY | VSLQ/S | 2 | ||||||||||||||||
| Rhopalanthe virus Y | RhVY | VVLQ/G | 1 | ||||||||||||||||
| Calanthe mild mosaic virus | CalMMV | VTLQ/G | 1 | ||||||||||||||||
| Sarcochilus virus Y | SarVY | VRMQ/A | 1 | ||||||||||||||||
| Dasheen mosaic virus | DsMV | IVQY/A | 1 | YRVG/G | 1 | VEVQ/A | 1 | VRIQ/S | 1 | VQFQ/N | 1 | VTAQ/G | 1 | VAME/G | 1 | VQLQ/G | 2 | VVLQ/A | 12 |
| VVFQ/A | 1 | ||||||||||||||||||
| VTMQ/A | 1 | ||||||||||||||||||
| VVMQ/A | 1 | ||||||||||||||||||
| AVLQ/A | 1 | ||||||||||||||||||
| VIMQ/A | 1 | ||||||||||||||||||
| Vanilla mosaic virus | VanMV | VQFQ/S | 1 | VVTQ/G | 1 | VAME/G | 1 | VTMQ/A | 2 | ||||||||||
| VIMQ/V | 1 | ||||||||||||||||||
| Alstroemeria mosaic virus | AlMV | VHHQ/V | 2 | ||||||||||||||||
| Passion fruit woodiness virus | PWV | IHHY/S | 2 | YRVG/G | 2 | VELQ/A | 2 | VKVQ/S | 2 | VRLQ/S | 2 | VSTQ/G | 2 | VELE/S | 2 | VSTQ/S | 2 | VSLQ/S | 7 |
| Basella rugose mosaic virus (= Peace lily mosaic virus) | IHHY/S | 3 | YKVG/G | 3 | VAHQ/S | 2 | VRYQ/S | 2 | VQYQ/D | 3 | VEFQ/G | 3 | VASE/G | 1 | VSEQ/S | 3 | VVYQ/S | 4 | |
| VVHQ/S | 1 | VRHQ/S | 1 | VAPE/G | 2 | VRFQ/S | 1 | ||||||||||||
| Keunjorong mosaic virus | KeuMV | MVHY/S | 1 | YRVG/G | 1 | VRLQ/S | 1 | VRLQ/S | 1 | VRLQ/H | 1 | VVHQ/G | 1 | VQLE/G | 1 | VREQ/A | 1 | VTLQ/S | 1 |
| Banana bract mosaic virus | BBrMV | IDHY/S | 2 | YLVG/G | 2 | VNFQ/S | 2 | VGFQ/N | 1 | VEFQ/N | 2 | VAFE/G | 2 | VEFE/G | 2 | VEFQ/H | 2 | VEFQ/S | 6 |
| VEFQ/N | 1 | ||||||||||||||||||
| Beet mosaic virus | BtMV | TMHY/S | 3 | YRVG/G | 3 | VEYQ/A | 3 | VKYQ/S | 3 | VQYQ/S | 3 | VQYQ/G | 3 | VREE/G | 3 | VVEQ/G | 3 | VTYQ/G | 7 |
| Peanut mottle virus | PeMoV | IHQY/S | 1 | YVVG/G | 1 | VVYQ/A | 1 | VRYQ/S | 1 | VQYQ/S | 1 | VRYQ/G | 1 | VATE/G | 1 | VEYQ/S | 1 | VRYQ/S | 5 |
| Ranunculus mosaic virus | VTFQ/G | 1 | |||||||||||||||||
| Narcissus late season yellows virus | NLSYV | MHHF/S | 1 | YLVG/G | 1 | VEHQ/V | 1 | VYHQ/S | 1 | VQHQ/S | 1 | VHHE/A | 1 | VNHE/S | 1 | VYSQ/M | 1 | VYHQ/S | 9 |
| Catharanthus mosaic virus | VYHQ/S | 1 | |||||||||||||||||
| Chilli ringspot virus | ChiRSV | INHY/S | 2 | YRVG/G | 2 | VEHQ/A | 2 | VVHQ/S | 2 | VLHE/S | 2 | VSHQ/A | 2 | VDHE/A | 2 | VSEQ/S | 2 | VYHQ/A | 6 |
| Araujia mosaic virus | ArjMV | VEYQ/A | 1 | ||||||||||||||||
| Narcissus yellow stripe virus | NYSV | MKHY/S | 1 | YLVG/G | 1 | VTHQ/T | 1 | VYHQ/S | 2 | VQHQ/S | 2 | VHHE/A | 2 | VNHE/S | 2 | VYSQ/M | 3 | VFHQ/S | 4 |
| VEHQ/T | 1 | VYHQ/S | 1 | ||||||||||||||||
| Scallion mosaic virus | ScaMV | IRQF/S | 1 | YAVG/G | 1 | VEHQ/S | 1 | VYHQ/A | 1 | VHHQ/T | 1 | VIHE/A | 1 | VEHE/S | 1 | VYAQ/M | 1 | VYHQ/A | 1 |
| Turnip mosaic virus | TuMV | IVHF/S | 144 | YRVG/G | 216 | VVHQ/A | 185 | VYHQ/T | 191 | VHHQ/N | 332 | VTHE/A | 372 | VDHE/S | 403 | VYAQ/T | 216 | VYHQ/A | 356 |
| IIHF/S | 11 | VVHQ/V | 3 | VYHQ/A | 24 | VNHQ/S | 11 | VVHE/A | 10 | VGHE/S | 2 | VYAQ/M | 2 | VYPQ/A | 1 | ||||
| IIHY/S | 38 | VTHQ/A | 10 | VHHQ/T | 2 | VHHQ/S | 65 | VIHE/A | 19 | ||||||||||
| ILHY/S | 1 | VAHQ/A | 5 | VHHQ/A | 3 | VNHQ/N | 2 | VAHE/A | 8 | ||||||||||
| IVHY/S | 14 | VGHQ/A | 4 | ||||||||||||||||
| IEHF/S | 1 | VIHQ/A | 3 | ||||||||||||||||
| ITHF/S | 3 | VKHQ/A | 4 | ||||||||||||||||
| IVHF/I | 1 | VEHQ/A | 2 | ||||||||||||||||
| ITHY/S | 1 | ||||||||||||||||||
| IMHF/S | 1 | ||||||||||||||||||
| MVHF/S | 1 | ||||||||||||||||||
| Hyacinth mosaic virus | HyaMV | VRHQ/S | 3 | ||||||||||||||||
| VRHQ/P | 1 | ||||||||||||||||||
| Tobacco vein banding mosaic virus | TVBMV | IEHY/S | 12 | YRVG/G | 12 | VEHQ/A | 12 | VIHQ/S | 12 | VVHQ/S | 12 | VEHQ/G | 11 | VDHE/A | 12 | VEEQ/S | 12 | VVHQ/G | 25 |
| AEHQ/G | 1 | VEHQ/A | 39 | ||||||||||||||||
| VVHQ/N | 3 | ||||||||||||||||||
| VVHH/G | 1 | ||||||||||||||||||
| Ranunculus mild mosaic virus | RanMMV | VFHQ/A | 3 | ||||||||||||||||
| Christmas bell potyvirus | LRQY/S | 1 | YRVG/G | 1 | VGHQ/D | 1 | VGHQ/S | 1 | VRHQ/S | 1 | VQHQ/G | 1 | VGHE/A | 1 | VECQ/A | 1 | VYHQ/S | 1 | |
| Veltheimia virus Y | VRYQ/A | 1 | |||||||||||||||||
| Japanese yam mosaic virus | JYMV | ITHY/S | 4 | YLIG/G | 2 | VVHQ/A | 2 | VYHQ/A | 1 | VYHQ/S | 2 | VYHE/A | 1 | VQHE/S | 2 | VRQQ/M | 2 | VYHQ/S | 8 |
| IIHY/S | 1 | VYHQ/G | 1 | VHHE/A | 1 | VFHQ/S | 1 | ||||||||||||
| IVHF/A | 1 | ||||||||||||||||||
| IKHY/A | 1 | ||||||||||||||||||
| IVHY/S | 1 | ||||||||||||||||||
| IVRF/A | 1 | ||||||||||||||||||
| Sweet potato feathery mottle virus | SPFMV | ITQF/S | 7 | YIVG/G | 7 | VEHQ/G | 7 | VYHQ/S | 7 | VLHQ/T | 52 | VQHQ/G | 1 | VGHE/S | 52 | VYAQ/T | 33 | VYHQ/S | 183 |
| IIQY/S | 3 | YLVG/G | 5 | VLHQ/G | 33 | VYAQ/A | 19 | VFHQ/S | 1 | ||||||||||
| IEQF/S | 5 | VTHQ/G | 2 | EYAQ/A | 1 | VHHQ/S | 2 | ||||||||||||
| VRHQ/G | 2 | LYHQ/S | 1 | ||||||||||||||||
| VKHQ/G | 12 | ||||||||||||||||||
| VAHQ/G | 1 | ||||||||||||||||||
| VIHQ/G | 1 | ||||||||||||||||||
| Sweet potato virus G | SPVG | MEQY/S | 3 | YLVG/G | 3 | VQHQ/A | 3 | VYHQ/S | 3 | VQHQ/S | 3 | VQHQ/A | 3 | VEHE/S | 3 | VTYQ/S | 3 | VHHQ/S | 20 |
| VFHQ/S | 1 | ||||||||||||||||||
| Sweet potato virus 2 | SPV-2 | MEQF/S | 1 | YLVG/G | 1 | VFHQ/A | 1 | VYHQ/S | 1 | VQHQ/S | 1 | VRHQ/G | 1 | VTHE/S | 1 | VYHQ/A | 1 | VYHQ/S | 18 |
| Sweet potato latent virus | SPLV | MQHY/N | 1 | YVVG/G | 1 | VVHQ/A | 1 | VHHQ/S | 1 | VQHQ/N | 1 | VSHQ/G | 1 | VIHE/S | 1 | VYAQ/S | 1 | VHHQ/A | 2 |
| Plum pox virus | PPV | IVHY/S | 30 | YLVG/G | 120 | VVHQ/S | 159 | VHHQ/S | 162 | VHHQ/T | 96 | VVHQ/G | 83 | VDHE/S | 86 | VYTQ/S | 78 | VIHQ/A | 128 |
| IIHY/S | 74 | VLHQ/S | 5 | VHHQ/N | 4 | VQHQ/T | 1 | VIHQ/G | 5 | VGHE/S | 12 | VYNQ/S | 17 | VVHQ/A | 142 | ||||
| LVHY/S | 4 | VVHQ/N | 3 | VQHQ/S | 1 | VHHQ/N | 1 | VAHQ/G | 5 | VYNQ/A | 3 | VVHQ/V | 2 | ||||||
| LCHY/S | 1 | VVHQ/A | 1 | VRHQ/S | 1 | AVHQ/G | 1 | VYNQ/S | 1 | LWHQ/A | 1 | ||||||||
| LIHY/T | 1 | VTHQ/G | 4 | VHTQ/S | 1 | VTHQ/A | 3 | ||||||||||||
| LIHY/A | 2 | VMHQ/A | 20 | ||||||||||||||||
| LVHY/A | 1 | VVHQ/T | 4 | ||||||||||||||||
| VLHQ/A | 1 | ||||||||||||||||||
| VAHQ/A | 1 | ||||||||||||||||||
| Lettuce mosaic virus | LMV | MVQY/S | 4 | YRVG/G | 4 | VEHQ/A | 5 | VRHQ/S | 5 | IYHQ/S | 4 | VRHQ/G | 3 | VKHE/S | 4 | VQFQ/S | 4 | VYHQ/V | 27 |
| IRHQ/G | 1 | ||||||||||||||||||
| Pokeweed mosaic virus | PkMV | MNHY/S | 3 | YKVG/G | 3 | VVFQ/D | 3 | VSFQ/S | 3 | VEFQ/S | 3 | VKFE/G | 3 | VSFE/S | 2 | VCLQ/A | 3 | VYFQ/S | 2 |
| VAFE/S | 1 | VHFQ/S | 1 | ||||||||||||||||
| Twisted-stalk chlorotic streak virus | VEFQ/D | 8 | |||||||||||||||||
| Yam mosaic virus | YMV | MRQF/S | 1 | YQVG/G | 1 | VEHQ/S | 1 | VSHQ/S | 1 | VHHQ/S | 1 | VKHQ/G | 1 | ATHE/G | 1 | VKAQ/G | 1 | VSHQ/A | 32 |
| Potato virus V | PVV | MVQF/S | 2 | YRVG/G | 1 | VVHQ/A | 1 | VRHQ/S | 1 | VHHQ/S | 1 | VVHQ/G | 1 | VVHE/A | 1 | VREQ/A | 1 | VRHQ/A | 7 |
| GRHQ/A | 4 | ||||||||||||||||||
| CRHQ/A | 1 | ||||||||||||||||||
| Tomato necrotic stunt virus | MTHY/S | 2 | YRVG/G | 2 | VHHQ/K | 2 | VRHQ/S | 2 | VHHQ/S | 2 | VRHQ/G | 2 | VSHE/S | 2 | VRWQ/G | 2 | VRHQ/S | 2 | |
| Wild potato mosaic virus | WPMV | MIQY/S | 1 | YRVG/G | 1 | VVHQ/D | 1 | VRHQ/S | 1 | VHHQ/S | 1 | VTHQ/G | 1 | VAHE/A | 1 | VREQ/G | 1 | VRHR/A | 1 |
| Peru tomato mosaic virus | PTV | MIQF/S | 1 | YRVG/G | 1 | VKHQ/D | 4 | VRHQ/S | 4 | VHHQ/P | 1 | VEHQ/G | 2 | VVHE/A | 2 | VHEQ/G | 2 | VYHQ/A | 3 |
| MVQF/S | 3 | YQVG/G | 1 | VHHQ/S | 1 | VREQ/G | 1 | ||||||||||||
| Ecuadorian rocoto virus | VREQ/G | 1 | VSHQ/S | 1 | |||||||||||||||
| Pepper mottle virus | PepMoV | MEQY/S | 20 | YRVG/G | 20 | VVHQ/R | 1 | VRHQ/S | 20 | VHHQ/S | 20 | VSHQ/G | 20 | VKHE/A | 20 | VREQ/A | 20 | VRHQ/S | 2 |
| VTHQ/R | 1 | VHHQ/S | 19 | ||||||||||||||||
| VIHQ/R | 18 | VHHQ/A | 1 | ||||||||||||||||
| VVHH/S | 1 | ||||||||||||||||||
| Verbena virus Y | VerVY | MQQF/S | 1 | YRMG/G | 1 | VEHQ/K | 1 | VHHQ/S | 1 | VHHQ/S | 1 | VSHQ/G | 1 | VEHE/S | 1 | VQEQ/G | 1 | VSHQ/A | 1 |
| Pepper severe mosaic virus | PepSMV | MTHF/S | 1 | YRVG/G | 1 | VSHQ/K | 1 | VRHQ/S | 1 | VHHQ/K | 1 | VSHQ/G | 1 | VVHE/A | 1 | VREQ/A | 1 | VYHQ/A | 2 |
| Pepper veinal mottle virus | PVMV | IQHY/S | 2 | YRVG/G | 2 | VKHQ/A | 2 | VNHQ/S | 2 | VMYQ/S | 2 | VSHQ/A | 2 | VEHE/A | 2 | VQEQ/G | 2 | VLHQ/A | 6 |
| Pepper yellow mosaic virus | PepYMV | MQHF/S | 1 | YRVG/G | 1 | VEHQ/K | 1 | VRHQ/S | 1 | VHHQ/S | 1 | VHHQ/G | 1 | VEHE/A | 1 | VREQ/G | 1 | VRHQ/A | 2 |
| VVHE/S | 1 | ||||||||||||||||||
| Amaranthus leaf mottle virus | AmLMV | VHHQ/A | 2 | ||||||||||||||||
| Amaranthus mosaic virus | VVSQ/S | 1 | |||||||||||||||||
| Alternanthera latent virus | VHHQ/S | 1 | |||||||||||||||||
| Potato virus Y | PVY | MVQF/S | 186 | YRVG/G | 239 | VRHQ/R | 218 | VRHQ/S | 214 | VHHQ/A | 195 | VSHQ/G | 225 | VEHE/A | 221 | VVEQ/A | 216 | VHHQ/A | 90 |
| MIQF/S | 93 | YRIG/G | 6 | VRHQ/V | 1 | VKHQ/S | 4 | VHHQ/V | 32 | VQHQ/G | 1 | VAHE/A | 1 | VLQQ/A | 1 | VHHQ/G | 117 | ||
| MIQY/S | 2 | ARHQ/R | 1 | VHHQ/S | 3 | VHHQ/G | 5 | VEHE/G | 1 | VVEQ/V | 5 | VYHQ/A | 124 | ||||||
| MVHF/S | 1 | VLTK/L | 1 | VTHQ/G | 1 | VVEQ/P | 1 | VHHQ/V | 2 | ||||||||||
| MVQF/N | 1 | VSPQ/G | 1 | VIEQ/A | 3 | VYHQ/G | 1 | ||||||||||||
| VTEQ/A | 1 | AHHQ/G | 1 | ||||||||||||||||
| VVEQ/A | 1 | ||||||||||||||||||
| Sunflower chlorotic mottle virus | SCMoV | MAQF/S | 4 | YRVG/G | 4 | VKHQ/K | 4 | VRHQ/S | 4 | VVHQ/S | 4 | YSHQ/G | 4 | VEHE/S | 4 | VREQ/S | 3 | VHHQ/G | 6 |
| VHEQ/S | 1 | ||||||||||||||||||
| Bidens mosaic virus | BiMV | VHHQ/V | 2 | ||||||||||||||||
| Bidens mottle virus | BiMoV | MTHF/S | 6 | YRVG/G | 6 | VSHQ/G | 6 | VRHQ/S | 6 | VHHQ/S | 6 | VRHQ/G | 6 | ASHE/S | 6 | VREQ/G | 6 | VHHQ/A | 11 |
| Pfaffia mosaic virus | PfMV | VYHQ/A | 1 | ||||||||||||||||
| Potato virus A | PVA | THHY/S | 8 | YRVG/G | 8 | VLFQ/A | 8 | VQFQ/S | 8 | VQFQ/S | 10 | VAFQ/G | 9 | VEFE/S | 10 | VYTQ/G | 8 | VYFQ/A | 39 |
| ISFQ/G | 1 | VHTQ/G | 1 | VYFQ/S | 1 | ||||||||||||||
| GYFQ/A | 1 | ||||||||||||||||||
| Potato virus B | TVHY/S | 1 | YKVG/G | 1 | VLFE/S | 1 | VQFQ/S | 1 | VQFQ/S | 1 | VTFQ/G | 1 | VEFE/S | 1 | VITQ/G | 1 | VFFQ/A | 1 | |
| Sunflower mosaic virus | SuMV | IYAQ/H | 1 | LYFQ/G | 1 | ||||||||||||||
| Butterfly flower mosaic virus | BFMV | LYFQ/G | 2 | ||||||||||||||||
| Tobacco vein mottling virus | TVMV | ATHF/S | 2 | YKVG/G | 1 | VEFQ/A | 2 | VRFQ/S | 2 | VRFQ/S | 2 | VKFQ/G | 1 | VAFE/S | 1 | VRTQ/G | 2 | VRFQ/S | 2 |
| YRVG/G | 1 | VRFQ/G | 1 | VSFE/S | 1 | ||||||||||||||
| Meadow saffron breaking virus | VDFQ/S | 1 | |||||||||||||||||
| Tobacco etch virus | TEV | MTHY/S | 6 | YNVG/G | 6 | LVEQ/A | 5 | IYTQ/S | 6 | IYLQ/S | 6 | VYFQ/G | 6 | LTFE/G | 7 | VYSQ/G | 6 | LYFQ/S | 8 |
| LIEQ/A | 1 | LYFQ/G | 1 | ||||||||||||||||
| Chilli veinal mottle virus | ChiVMV | INHY/S | 1 | YRVG/G | 9 | VDHQ/A | 7 | VNHQ/S | 9 | VMHQ/S | 6 | VDHQ/A | 2 | VEHE/A | 9 | VREQ/A | 2 | VAHQ/A | 19 |
| LKHY/S | 2 | VGHQ/A | 2 | VMHQ/N | 2 | VNHQ/A | 5 | VSEQ/A | 3 | VAHQ/S | 27 | ||||||||
| LRHY/S | 1 | VLHQ/S | 1 | VNLQ/A | 1 | VCEQ/A | 4 | VTHQ/S | 20 | ||||||||||
| LSHY/S | 1 | VIHQ/S | 4 | ||||||||||||||||
| TGHY/S | 1 | VLHQ/S | 1 | ||||||||||||||||
| VNHY/S | 1 | VTHQ/A | 4 | ||||||||||||||||
| VKHY/S | 1 | VIHQ/A | 1 | ||||||||||||||||
| VDHQ/A | 1 | ||||||||||||||||||
| Wild tomato mosaic virus | MVHF/S | 1 | YCVG/G | 1 | VQHQ/A | 1 | VNHQ/S | 1 | VMHQ/S | 1 | VDHQ/A | 1 | VEHE/A | 1 | VQEQ/S | 1 | VRHQ/S | 1 | |
| Ornithogalum mosaic virus | OrMV | TVHY/S | 4 | YFVG/G | 3 | VKHQ/V | 3 | VYHQ/L | 4 | VQHQ/D | 2 | VSHQ/G | 3 | VEHE/G | 4 | VYEQ/G | 5 | VHHQ/A | 4 |
| YYVG/G | 1 | VKHQ/A | 1 | VQHQ/S | 1 | VIHQ/G | 1 | VLHQ/A | 1 | ||||||||||
| VCHQ/A | 1 | ||||||||||||||||||
| VMHQ/A | 1 | ||||||||||||||||||
| VQHQ/A | 2 | ||||||||||||||||||
| VSHQ/A | 10 | ||||||||||||||||||
| VWHQ/A | 10 | ||||||||||||||||||
| VPHP/P? | 2 | ||||||||||||||||||
| Ornithogalum stripe mosaic virus | VYHQ/T | 4 | |||||||||||||||||
| Ornithogalum necrotic mosaic virus | VMFQ/S | 1 | |||||||||||||||||
| Vallota mosaic virus | ValMV | VYHQ/A | 3 | ||||||||||||||||
| Colombian datura virus | CDV | TKHF/S | 1 | YLVG/G | 1 | TTLQ/K | 1 | TRLE/S | 1 | ITFQ/S | 1 | ITLQ/G | 1 | IELE/G | 1 | IVIQ/A | 1 | IYLQ/A | 45 |
| Zucchini yellow fleck virus | VYHQ/S | 4 | |||||||||||||||||
| Papaya ringspot virus | PRSV | MDQY/N | 7 | YIVG/G | 26 | VIHQ/A | 27 | VYHQ/S | 27 | VYHQ/S | 22 | VFHQ/G | 25 | VHHE/G | 249 | VFEQ/S | 34 | VFHQ/S | 209 |
| MEQY/N | 18 | LHCG/G | 1 | VYHQ/G | 2 | AFHQ/G | 1 | VYHE/G | 1 | AFEQ/S | 1 | VYHQ/S | 21 | ||||||
| MEQY/S | 1 | VFHQ/S | 2 | VLHE/G | 1 | VFYQ/S | 17 | ||||||||||||
| VFHP/T | 1 | ||||||||||||||||||
| VYHQ/A | 1 | ||||||||||||||||||
| VFHQ/L | 2 | ||||||||||||||||||
| Algerian watermelon mosaic virus | IIHY/S | 1 | YLVG/G | 1 | VAHQ/A | 1 | VYHQ/S | 1 | VYHQ/G | 1 | VYHQ/G | 1 | VVHE/G | 1 | VYEQ/G | 1 | VYHQ/A | 1 | |
| Squash chlorosis mottling virus | CFHQ/C | 1 | |||||||||||||||||
| Papaya leaf distortion mosaic virus | PLDMV | MTHY/S | 4 | YLVG/G | 4 | VDHQ/A | 2 | VAHQ/S | 4 | VTHQ/S | 4 | VHHE/G | 4 | VSFE/G | 4 | VCAQ/S | 4 | VSHQ/S | 9 |
| VGHQ/A | 2 | ||||||||||||||||||
| Daphne virus Y | DVY | MHHY/S | 1 | YRVG/G | 1 | TEYE/S | 1 | VQYQ/S | 1 | VMYQ/G | 1 | VEYQ/G | 1 | VEYE/G | 1 | VIEQ/G | 1 | VCYQ/A | 1 |
| Ranunculus leaf distortion virus | FCFQ/S | 1 | |||||||||||||||||
| Bean yellow mosaic virus | BYMV | IREF/S | 16 | YRVG/G | 18 | YVFQ/A | 2 | YRFQ/S | 14 | LQFE/S | 17 | FIFQ/G | 2 | FDFE/S | 17 | LSFQ/S | 16 | CRFQ/S | 34 |
| FRVG/G | 1 | YTFQ/A | 14 | YRFQ/L | 1 | FTFQ/G | 2 | FGFE/S | 1 | LGFQ/S | 1 | CCFQ/S | 9 | ||||||
| YKFQ/S | 1 | FVFQ/G | 14 | FEFE/S | 1 | VFYQ/S | 1 | ||||||||||||
| CRFQ/P | 1 | ||||||||||||||||||
| CKFQ/S | 1 | ||||||||||||||||||
| CSFQ/S | 1 | ||||||||||||||||||
| GLFH/S | 1 | ||||||||||||||||||
| CPFQ/A | 1 | ||||||||||||||||||
| CFFQ/S | 1 | ||||||||||||||||||
| Clover yellow vein virus | ClYVV | IREF/S | 2 | YRVG/G | 2 | FVME/S | 2 | YKFQ/S | 2 | LQFE/S | 2 | FKFQ/G | 1 | AEFE/S | 2 | CSFQ/A | 2 | FVFQ/S | 9 |
| YKFQ/G | 1 | ||||||||||||||||||
| Thunberg fritillary mosaic virus | TFMV | IKEF/S | 2 | YRVG/G | 2 | YIFQ/A | 2 | MKFQ/S | 2 | LHFQ/S | 2 | YSFQ/A | 2 | IVFE/S | 1 | WNFQ/A | 2 | FCFQ/A | 4 |
| LVFE/S | 1 | ||||||||||||||||||
| Ipomoea vein mosaic virus | VYHQ/S | 2 | |||||||||||||||||
| Amazon lily mosaic virus | ALiMV | VYHQ/S | 1 | ||||||||||||||||
| Lily virus A | LVA | YVVG/R | 1 | VEFQ/A | 1 | VKFQ/S | 1 | VNFQ/S | 1 | VRFQ/A | 1 | VDFE/N | 1 | VGLQ/S | 1 | VIFQ/A | 1 | ||
| Lily mottle virus | LMoV | MIHY/S | 3 | YQVG/G | 5 | VQFQ/A | 5 | VKFQ/S | 5 | VQFQ/T | 5 | VKFQ/A | 5 | VEFE/N | 7 | VGLQ/S | 5 | VAFQ/A | 16 |
| MVHY/S | 1 | ||||||||||||||||||
| Leek yellow stripe virus | LYSV | LEHY/S | 5 | YRVG/G | 6 | MEFQ/A | 5 | MTLQ/S | 4 | MMYE/S | 4 | MNYQ/G | 4 | FEFE/G | 8 | WEFQ/S | 11 | FEYQ/A | 19 |
| LEYF/S | 1 | MEYQ/A | 1 | MLHQ/S | 2 | MMYQ/S | 3 | MDYQ/G | 4 | FGYQ/A | 1 | ||||||||
| MMFQ/S | 1 | FVFQ/A | 15 | ||||||||||||||||
| Pea seed-borne mosaic virus | PSbMV | IDHF/S | 3 | YRVG/G | 4 | FSIQ/A | 3 | VRCQ/S | 2 | VRCQ/S | 3 | VKLE/G | 3 | VRTE/A | 3 | VRTQ/S | 3 | VRLQ/A | 29 |
| INHF/S | 1 | FSLQ/A | 1 | VRCQ/N | 1 | ||||||||||||||
| Apium virus Y | ApVY | MIHY/S | 1 | YAVG/G | 1 | VKHE/A | 1 | VYHQ/S | 1 | VTHQ/S | 1 | VYHQ/G | 1 | TTHE/G | 1 | VYSQ/S | 1 | VYHQ/G | 9 |
| Carrot virus Y | CarVY | VYNQ/S | 1 | VFHQ/G | 3 | ||||||||||||||
| Celery mosaic virus | CeMV | TVHY/S | 1 | YAVG/G | 1 | VKHE/A | 1 | VYHQ/S | 1 | VTHQ/N | 1 | VYHQ/G | 1 | ATHE/G | 1 | VYNQ/S | 1 | VFHQ/G | 8 |
| Celery yellow mosaic virus | CeYMV | VYHQ/G | 1 | ||||||||||||||||
| Angelica virus Y | VYHQ/G | 2 | |||||||||||||||||
| Spiranthes mosaic virus 3 | SpMV3 | ITLQ/S | 7 | ||||||||||||||||
| Freesia mosaic virus (Spiranthes mosaic virus 2) | FreMV | ITQY/S | 1 | YNVG/G | 1 | VTYQ/G | 1 | VKYQ/S | 1 | VQYQ/D | 1 | VRYQ/G | 1 | VRTE/G | 1 | AMYQ/H | 1 | VRYQ/A | 5 |
| Onion yellow dwarf virus | OYDV | IEHY/S | 4 | YNVG/G | 6 | VVYQ/A | 1 | VQYQ/A | 5 | VNYQ/S | 7 | VRYQ/A | 1 | VSFE/A | 5 | VTFQ/S | 5 | VRYQ/A | 41 |
| IEHY/A | 2 | VFYQ/A | 2 | VNYQ/A | 1 | VTYQ/A | 2 | VTFE/A | 2 | VSFQ/S | 2 | VHYQ/A | 1 | ||||||
| VIYQ/A | 2 | VHYQ/A | 1 | VKYQ/A | 1 | VYYQ/A | 1 | ||||||||||||
| VEYQ/A | 1 | VQYQ/A | 3 | ||||||||||||||||
| VEYQ/G | 1 | ||||||||||||||||||
| Shallot yellow stripe virus | SYSV | VDHY/S | 2 | YNVG/G | 2 | VEYQ/A | 2 | VHYQ/A | 2 | VEYQ/T | 2 | VHYQ/A | 2 | VAYE/A | 2 | VAFQ/A | 3 | VSYQ/A | 21 |
| VSYE/A | 1 | VSYQ/V | 1 | ||||||||||||||||
| Carnation vein mottle virus | CVMoV | VHFQ/G | 1 | ||||||||||||||||
| Chinese artichoke mosaic virus | CAMV | VYHQ/A | 1 | ||||||||||||||||
| VHHQ/A | 1 | ||||||||||||||||||
| Henbane mosaic virus | HMV | VYHQ/A | 1 | ||||||||||||||||
| Cypripedium virus Y | CypVY | VFHQ/S | 1 | ||||||||||||||||
| VYHQ/S | 1 | ||||||||||||||||||
| Vanilla distortion mosaic virus | VYHQ/G | 3 | |||||||||||||||||
| VYPQ/G | 2 | ||||||||||||||||||
| Hippeastrum mosaic virus | HiMV | VDHY/N | 2 | YLVG/G | 2 | VTYQ/S | 2 | CRFQ/S | 2 | VHYQ/N | 2 | VTYQ/G | 2 | VSYE/S | 2 | VYAQ/D | 2 | CIFQ/A | 5 |
| CVFQ/S | 5 | ||||||||||||||||||
| CIFQ/S | 1 | ||||||||||||||||||
| Endive necrotic mosaic virus | ENMV | VKHQ/G | 1 | ||||||||||||||||
| Iris severe mosaic virus | ISMV | VHFE/G | 2 | ||||||||||||||||
| VRFE/G | 1 | ||||||||||||||||||
| Lycoris mild mottle virus | LyMMoV | FTFQ/A | 1 | ||||||||||||||||
| Moroccan watermelon mosaic virus | MWMV | MVHY/S | 1 | YMVG/G | 1 | VVHQ/A | 1 | VYHQ/S | 1 | VYHQ/E | 1 | VHYQ/G | 1 | VTHE/G | 1 | VYEQ/N | 1 | VYHQ/A | 13 |
| VYHQ/S | 1 | ||||||||||||||||||
| Ornithogalum virus 2 | OrV2 | VYHQ/A | 2 | ||||||||||||||||
| VYHQ/T | 6 | ||||||||||||||||||
| Ornithogalum virus 3 | OrV3 | VMFQ/S | 6 | ||||||||||||||||
| Veltheimia mosaic virus | VMFQ/S | 2 | |||||||||||||||||
| VRHQ/S | 1 | ||||||||||||||||||
| Pleione virus Y | PlVY | VFHQ/S | 1 | ||||||||||||||||
| Omphalodes virus Y | VFHQ/A | 1 | |||||||||||||||||
| Tuberose mild mosaic virus | TuMMV | VHHQ/S | 3 | ||||||||||||||||
| Tuberose mild mottle virus | TuMMoV | VHHE/S | 1 | VHHQ/G | 1 | VEHE/S | 1 | VHEQ/G | 1 | VHHQ/S | 1 | ||||||||
| Narcissus degeneration virus | NDV | IKYY/S | 2 | YAVG/G | 2 | VKFQ/Y | 2 | VQFQ/S | 2 | VQFQ/N | 1 | VQFQ/G | 2 | VDFE/N | 2 | VGMQ/S | 2 | VSFQ/S | 7 |
| VQFQ/S | 1 | ||||||||||||||||||
| Watermelon leaf mottle virus | WLMV | VHFQ/S | 1 | ||||||||||||||||
| Jasmine potyvirus T | JVT | VHFQ/S | 1 | ||||||||||||||||
| Yam mild mosaic virus | YMMV | ITHY/S | 1 | YRVG/G | 1 | VEHQ/A | 1 | VAHQ/S | 1 | VLHQ/S | 1 | VTHQ/G | 1 | VIFE/G | 1 | VVEQ/S | 1 | VVHQ/A | 39 |
| VIHQ/A | 3 | ||||||||||||||||||
| Carrot thin leaf virus | CTLV | VYHQ/E | 1 | ||||||||||||||||
| Euphorbia ringspot virus | EuRSV | VRHQ/S | 1 | ||||||||||||||||
| Tulip breaking virus | TBV | VQFQ/A | 1 | ||||||||||||||||
| Konjac mosaic virus | KoMV | MKQF/A | 1 | YLVG/G | 1 | VEHQ/H | 1 | VRHQ/G | 1 | VLHQ/S | 1 | VVHQ/A | 1 | IAHE/G | 1 | VYAQ/S | 1 | VYHQ/S | 1 |
| VYHQ/N | 1 | ||||||||||||||||||
| Zantedeschia mosaic virus (probably isolates of Konjac mosaic virus) | ZaMV | VYHQ/S | 9 | ||||||||||||||||
| VYHQ/S | 1 | ||||||||||||||||||
| VFHQ/S | 1 | ||||||||||||||||||
| VYHQ/N | 4 | ||||||||||||||||||
| Zantedeschia mild mosaic virus | IHHY/S | 1 | YRVG/G | 1 | VSTQ/A | 1 | VRVQ/S | 1 | VHLQ/S | 1 | VTTQ/G | 1 | VNLE/S | 1 | VYTQ/S | 1 | VVLQ/A | 3 | |
| VILQ/A | 3 | ||||||||||||||||||
| Impatiens flower break virus | VATQ/S | 1 | VQTQ/S | 1 | VQLQ/S | 1 | VTTQ/G | 1 | VVVE/S | 1 | VAMQ/S | 1 | VYLQ/S | 1 | |||||
| Tradescantia mild mosaic virus | VYFQ/S | 2 | |||||||||||||||||
| Blue squill virus A | IHHY/A | 2 | YRVG/G | 3 | VTPQ/A | 3 | VKLQ/S | 3 | VRLQ/S | 2 | VTTQ/G | 2 | VETE/S | 2 | VCTQ/S | 2 | VSLQ/S | 3 | |
| Malaysia Passiflora virus | VSLQ/S | 1 | |||||||||||||||||
| Lupin mosaic virus | MIHY/S | 1 | YHVG/G | 1 | VQHQ/S | 1 | VYHQ/S | 1 | VFHQ/S | 1 | VYHQ/G | 1 | VTHE/S | 1 | VYSQ/S | 1 | VYHQ/S | 1 | |
| Kalanchoe mosaic virus | KMV | VYHQ/S | 3 | ||||||||||||||||
| Ornamental onion stripe mosaic virus | VVHQ/G | 1 | |||||||||||||||||
| Gloriosa stripe mosaic virus | VHHQ/S | 2 | |||||||||||||||||
| VYHQ/S | 1 | ||||||||||||||||||
| Muscari mosaic virus | VFHQ/S | 2 | |||||||||||||||||
| Ornithogalum mosaic virus 4 | VVYQ/A | 1 | |||||||||||||||||
| Anemone mosaic virus | VAFQ/A | 1 | |||||||||||||||||
| Stenomesson mosaic virus | LCFQ/S | 1 | |||||||||||||||||
| Taiwan passionfruit virus | VSLQ/S | 2 | |||||||||||||||||
| Arracacha mottle virus | MTHF/S | 1 | YRVG/G | 1 | VEHQ/K | 1 | VEHQ/S | 1 | VHHQ/S | 1 | VMHQ/G | 1 | VDHE/S | 1 | VGFQ/S | 1 | VYHQ/G | 1 | |
| Unnamed Tricyrtis potyvirus | VYLQ/S | 1 | |||||||||||||||||
| Nerine yellow stripe virus | NeYSV | VMFQ/S | 2 | ||||||||||||||||
| VIFQ/S | 1 | ||||||||||||||||||
| VVFQ/S | 1 | ||||||||||||||||||
| VVFQ/A | 1 | ||||||||||||||||||
| Vallota speciosa virus | IEHY/S | 1 | YNVG/G | 1 | VEFQ/H | 1 | VQFQ/S | 1 | VLFQ/S | 1 | VEFQ/G | 1 | VDFE/N | 1 | VELQ/S | 1 | VAFQ/S | 6 | |
| Panax notoginseng virus Y | VIHQ/G | 2 | |||||||||||||||||
| Iris mild mosaic virus | IMMV | KLSF/T | 1 | YRVG/G | 1 | VEHQ/A | 2 | VNHQ/S | 2 | VLHE/S | 2 | VNHQ/A | 2 | VDHE/A | 2 | MREQ/S | 2 | VEHQ/S | 5 |
| Malva vein clearing virus | VYHQ/A | 3 | |||||||||||||||||
| VYHQ/M | 2 | ||||||||||||||||||
| Passiflora chlorosis virus | VSLQ/S | 1 | |||||||||||||||||
| Hardenbergia mosaic virus | HaMV | VHHY/S | 1 | YRVG/G | 2 | VHLQ/A | 1 | VRLQ/S | 2 | VRLQ/G | 2 | VVTQ/G | 2 | VEVE/G | 2 | VTTQ/S | 2 | VSLQ/S | 4 |
| IHHY/T | 1 | VNLQ/A | 1 | ||||||||||||||||
| Brugmansia turtleback leaf virus | MIQY/S | 2 | YRVG/G | 2 | VHHQ/K | 2 | VHHQ/S | 2 | VHHQ/S | 2 | VSHQ/G | 2 | VAHE/A | 2 | VREQ/G | 2 | VYHQ/S | 2 | |
| Brugmansia suaveolens mottle virus | BsMoV | MHHY/S | 1 | YLVG/G | 1 | VAHQ/R | 1 | VRHQ/S | 1 | VQHQ/N | 1 | VTHQ/G | 1 | VEHE/A | 1 | VRER/G | 1 | VRHQ/S | 2 |
| Begonia flower break virus | VLYQ/S | 1 | |||||||||||||||||
| Jasmine yellow mosaic virus | VHFQ/S | 1 | |||||||||||||||||
| Commelina mild mosaic virus | VTHQ/S | 1 | |||||||||||||||||
| Tamarillo leaf malformation virus | IYLQ/A | 2 | |||||||||||||||||
| Trillium crinkled leaf virus | VIHQ/S | 1 | |||||||||||||||||
| VTHQ/S | 1 | ||||||||||||||||||
| VWHQ/S | 2 | ||||||||||||||||||
| Triteleia mosaic virus | VLFQ/G | 1 | |||||||||||||||||
| Sunflower mild mosaic virus | SuMMV | MTHY/S | 1 | YAVG/G | 1 | VKLQ/Q | 1 | IHLQ/S | 1 | IGLQ/S | 1 | IALQ/G | 1 | IKLE/G | 1 | IKVQ/A | 1 | IHLQ/G | 2 |
| Snowdrop virus Y | VRFQ/M | 1 | |||||||||||||||||
| Cotyledon virus Y | VIHQ/G | 1 | |||||||||||||||||
| Lily virus Y | VIFQ/A | 1 | |||||||||||||||||
| Arisaema potyvirus 1 | VAFQ/D | 1 | |||||||||||||||||
| Phalaenopsis potyvirus | VVYQ/S | 1 | |||||||||||||||||
| Unnamed Verbena potyvirus | VEHQ/S | 1 | |||||||||||||||||
Data prepared by Mike Adams, Rothamsted Research, using all sequences available on June 30th 2013.
** PLEASE NOTE: THIS INFORMATION IS NO LONGER BEING UPDATED BUT WILL REMAIN ACCESSIBLE FOR THE TIME BEING. ***
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