All Known Sequences of Coronaviridae

Family: Coronaviridae

Genera in the Family

• Alphacoronavirus sequences
• Bafinivirus sequences
• Betacoronavirus sequences
• Deltacoronavirus sequences
• Gammacoronavirus sequences
• Torovirus sequences
• Unassigned Coronaviridae sequences

Unassigned Viruses in the Family

Alphacoronavirus 1 (ACoV-1) - Alphacoronavirus

• AJ271965 Transmissible gastroenteritis virus complete genome, genomic RNA
• DQ010921 Feline coronavirus strain FIPV 79-1146, complete genome.

Ferret coronavirus (FerCoV) - Alphacoronavirus

None reported

Human coronavirus 229E (HCoV-229E) - Alphacoronavirus

• AF304460 Human coronavirus 229E, complete genome.

Human coronavirus NL63 (HCoV-NL63) - Alphacoronavirus

• AY567487 Human Coronavirus NL63, complete genome.

Myotis bat coronavirus 3 (My-BatCoV-3) - Alphacoronavirus

None reported

Myotis bat coronavirus 48 (My-BatCoV-48) - Alphacoronavirus

None reported

Myotis bat coronavirus D2.2 (My-BatCoV-D2.2) - Alphacoronavirus

None reported

Myotis bat coronavirus HKU6 (My-BatCoV-HKU6) - Alphacoronavirus

None reported

Eptesicus bat coronavirus 65 (Ep-BatCoV-65) - Alphacoronavirus

None reported

Kenya bat coronavirus BtKY12 (BatCoV-BtKY12) - Alphacoronavirus

None reported

Kenya bat coronavirus BtKY21 (BatCoV-BtKY21) - Alphacoronavirus

None reported

Myotis Bat coronavirus M.mac (My-BatCoV-M.mac) - Alphacoronavirus

None reported

Myotis bat coronavirus D8.38 (My-BatCoV-D8.38) - Alphacoronavirus

None reported

Raccoon dog coronavirus GZ43 (RDCoV-GZ43) - Alphacoronavirus

None reported

Chaerophon bat coronavirus 22 (Ch-BatCoV-22) - Alphacoronavirus

None reported

Chaerophon bat coronavirus 40 (Ch-BatCoV-40) - Alphacoronavirus

None reported

Miniopterus bat coronavirus 1 (Mi-BatCoV-1) - Alphacoronavirus

• EU420138 Bat coronavirus 1A strain AFCD62, complete genome.

Nyctalus bat coronavirus VM366 (Ny-BatCoV-VM366) - Alphacoronavirus

None reported

Carollia bat coronavirus 1FY2BA (Ca-BatCoV-1FY2BA) - Alphacoronavirus

None reported

Miniopterus bat coronavirus 088 (Mi-BatCoV-088) - Alphacoronavirus

None reported

Porcine epidemic diarrhea virus (PEDV) - Alphacoronavirus

• AF353511 Porcine epidemic diarrhea virus strain CV777, complete genome.

Rousettus bat coronavirus HKU10 (Ro-BatCoV-HKU10) - Alphacoronavirus

• JQ989270 Rousettus bat coronavirus HKU10 isolate 183A, complete genome.

Scotophilus bat coronavirus 512 (Sc-BatCoV-512) - Alphacoronavirus

• DQ648858 Bat coronavirus (BtCoV/512/2005) ORF1, spike protein, putative ORF3, envelope protein, matrix protein, and nucleocapsid protein genes, complete cds.

Miniopterus bat coronavirus HKU7 (Mi-BatCoV-HKU7) - Alphacoronavirus

None reported

Miniopterus bat coronavirus HKU8 (Mi-BatCoV-HKU8) - Alphacoronavirus

• EU420139 Bat coronavirus HKU8 strain AFCD77, complete genome.

Rhinolophus bat coronavirus A970 (Rh-BatCoV-A970) - Alphacoronavirus

None reported

Rhinolophus bat coronavirus HKU2 (RhBatCoV-HKU2) - Alphacoronavirus

• EF203064 Bat coronavirus HKU2 strain HKU2/GD/430/2006, complete genome.

Glossophaga bat coronavirus 1CO7BA (Gl-BatCoV-1CO7BA) - Alphacoronavirus

None reported

Pipistrellus bat coronavirus D5.16 (Pi-BatCoV-D5.16) - Alphacoronavirus

None reported

Pipistrellus bat coronavirus D5.71 (Pi-BatCoV-D5.71) - Alphacoronavirus

None reported

Pipistrellus bat coronavirus VM312 (Pi-BatCoV-VM312) - Alphacoronavirus

None reported

Yellow-bellied weasel coronavirus GX (YWCoV-GX) - Alphacoronavirus

None reported

Chinese ferret badger coronavirus DM95 (CFBCoV-DM95) - Alphacoronavirus

None reported

White bream virus (WBV) - Bafinivirus

• DQ898157 White bream virus strain DF24/00, complete genome.

Betacoronavirus 1 (BCoV-1) - Betacoronavirus

• AF391541 Bovine coronavirus isolate BCoV-ENT, complete genome.
• AY391777 Human coronavirus OC43, complete genome.
• DQ011855 Porcine hemagglutinating encephalomyelitis virus strain VW572, complete genome.
• EF446615 Equine coronavirus strain NC99, complete genome.

Murine coronavirus (MuCoV) - Betacoronavirus

• AF201929 Murine hepatitis virus strain 2, complete genome.

Human coronavirus HKU1 (HCoV-HKU1) - Betacoronavirus

• AY597011 Human coronavirus HKU1, complete genome.

Rabbit coronavirus HKU14 - Betacoronavirus

• JN874559 Rabbit coronavirus HKU14 strain HKU14-1, complete genome.

Betacoronavirus England 1 - Betacoronavirus

• KC164505 Betacoronavirus England 1, complete genome.

Rousettus bat coronavirus HKU9 (Ro-BatCoV-HKU9) - Betacoronavirus

• EF065513 Bat coronavirus HKU9-1, complete genome.

Pipistrellus bat coronavirus HKU5 (Pi-BatCoV-HKU5) - Betacoronavirus

• EF065509 Bat coronavirus HKU5-1, complete genome.

Rhinonicteris bat coronavirus 000 (Rh-BatCoV-000) - Betacoronavirus

None reported

Tylonycteris bat coronavirus HKU4 (Ty-BatCoV-HKU4) - Betacoronavirus

• DQ648794 Bat coronavirus (BtCoV/133/2005), complete genome.

Middle East respiratory syndrome coronavirus - Betacoronavirus

• KF186567 Middle East respiratory syndrome coronavirus isolate Al-Hasa_1_2013, complete genome.

Severe acute respiratory syndrome-related coronavirus (SARSr-CoV) - Betacoronavirus

• AY278554 SARS coronavirus CUHK-W1, complete genome.

Munia coronavirus HKU13 (MunCoV-HKU13) - Deltacoronavirus

• FJ376622 Munia coronavirus HKU13-3514, complete genome.

Bulbul coronavirus HKU11 (BuCoV-HKU11) - Deltacoronavirus

• FJ376619 Bulbul coronavirus HKU11-934, complete genome.

Thrush coronavirus HKU12 (ThCoV-HKU12) - Deltacoronavirus

• FJ376621 Thrush coronavirus HKU12-600, complete genome.

Wigeon coronavirus HKU20 - Deltacoronavirus

• JQ065048 Wigeon coronavirus HKU20 strain HKU20-9243, complete genome.

Porcine coronavirus HKU15 - Deltacoronavirus

• JQ065042 Porcine coronavirus HKU15 strain HKU15-44, complete genome.

Sparrow coronavirus HKU17 - Deltacoronavirus

• JQ065045 Sparrow coronavirus HKU17 strain HKU17-6124, complete genome.

White-eye coronavirus HKU16 - Deltacoronavirus

• JQ065044 White-eye coronavirus HKU16 strain HKU16-6847, complete genome.

Night-heron coronavirus HKU19 - Deltacoronavirus

• JQ065047 Night-heron coronavirus HKU19 strain HKU19-6918, complete genome.

Magpie-robin coronavirus HKU18 - Deltacoronavirus

• JQ065046 Magpie-robin coronavirus HKU18 strain HKU18-chu3, complete genome.

Common-moorhen coronavirus HKU21 - Deltacoronavirus

• JQ065049 Common-moorhen coronavirus HKU21 strain HKU21-8295, complete genome.

Avian coronavirus (AvCoV) - Gammacoronavirus

• EU095850 Turkey coronavirus isolate MG10, complete genome.
• M95169 Avian infectious bronchitis virus pol protein, spike protein, small virion-associated protein, membrane protein, and nucleocapsid protein genes, complete cds.

Beluga whale coronavirus SW1 (BWCoV-SW1) - Gammacoronavirus

• EU111742 Coronavirus SW1, complete genome.

Human torovirus (HuTV) - Torovirus

None reported

Bovine torovirus (BoTV) - Torovirus

• AY427798 Breda virus strain Breda 1, complete genome.

Equine torovirus (EqTV) - Torovirus

None reported

Porcine torovirus (PoTV) - Torovirus

None reported

Duck coronavirus (DCoV) - Unassigned Coronaviridae

None reported

Goose coronavirus (GCoV) - Unassigned Coronaviridae

None reported

Pigeon coronavirus (PCoV) - Unassigned Coronaviridae

None reported

Parrot coronavirus AV71 (PaCoV) - Unassigned Coronaviridae

None reported

Sable antelope coronavirus - Unassigned Coronaviridae

• EF424621 Sable antelope coronavirus US/OH1/2003, complete genome.

Asian leopard cat coronavirus (ALCCoV) - Unassigned Coronaviridae

None reported

Chinese ferret badger coronavirus GX (CFBCoV-GX) - Unassigned Coronaviridae

None reported